Diversity of endophytic bacteria in ginseng and their potential for plant growth promotion

Journal of Microbiology

Volumn 48, Issue 5, 2010, Pages 559-565

  Vendan, Regupathy Thamizh ^a   Yu, Young Joon ^b   Lee, Sun Hee ^b   Rhee, Young Ha ^b  

^a TAMIL NADU AGRICULTURAL UNIVERSITY   (India)

^b Chungnam National University   (South Korea)

Author keywords

diversity; endophytic bacteria; ginseng; plant growth promoting traits

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; INDOLEACETIC ACID; INDOLEACETIC ACID DERIVATIVE; NITROGENASE REDUCTASE; OXIDOREDUCTASE; PHOSPHATE; PHYTOHORMONE; RIBOSOME DNA; RNA 16S;

ARTICLE; BACTERIAL PHENOMENA AND FUNCTIONS; BACTERIUM; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; GINSENG; ISOLATION AND PURIFICATION; KOREA; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NITROGEN FIXATION; PHYLOGENY; PHYSIOLOGY; PLANT STEM; SYMBIOSIS;

BACTERIA; BACTERIAL PHYSIOLOGICAL PHENOMENA; BACTERIAL PROTEINS; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; INDOLEACETIC ACIDS; KOREA; MOLECULAR SEQUENCE DATA; NITROGEN FIXATION; OXIDOREDUCTASES; PANAX; PHOSPHATES; PHYLOGENY; PLANT GROWTH REGULATORS; PLANT STEMS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SYMBIOSIS;

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; BACILLUS (BACTERIUM); BACILLUS CEREUS; BACILLUS MEGATERIUM; BACTERIA (MICROORGANISMS); FIRMICUTES; GAMMAPROTEOBACTERIA; MICROCOCCUS LUTEUS; PANAX GINSENG; STAPHYLOCOCCUS;

EID: 79951542442     PISSN: 12258873     EISSN: 12258873     Source Type: Journal    
DOI: 10.1007/s12275-010-0082-1     Document Type: Article

References (35)

1. Araújo, W. L., J. Marcon, W. Maccheroni, J. D. van Elas, Jr., J. W. L. van Vuurde, and J. L. Azevedo. 2002. Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl. Environ. Microbiol. 68, 4906-4914.
2. Bai, Y., D. A. Frederic, L. S. Donald, and T. D. Brian. 2002. Isolation of plant-growth-promoting Bacillus strains from soybean root nodules. Can. J. Microbiol. 48, 230-238.
3. Burgmann, H., F. Widmer, W. Von Sigler, and J. Zeyer. 2004. New molecular screening tools for analysis of free-living diazotrophs in soil. Appl. Environ. Microbiol. 70, 240-247.
4. Chanway, C. P., M. Shishido, J. Nairn, S. S. Jungwirth, J. Markham, G. Xiao, and F. B. Holl. 2000. Endophytic colonization and field responses of hybrid spruce seedlings after inoculation with plant growth-promoting rhizobacteria. For. Ecol. Manag. 133, 81-88.
5. Chi, F., S. H. Shen, H. P. Cheng, Y. X. Jing, Y. G. Yanni, and F. B. Dazzo. 2005. Ascending migration of endophytic rhizobia from roots to leaves, inside rice plants and assessment of benefits to rice growth physiology. Appl. Environ. Microbiol. 71, 7271-7278.
6. Cho, K. M., S. Y. Hong, S. M. Lee, Y. H. Kim, G. G. Kahng, Y. P. Lim, H. Kim, and H. D. Yun. 2007. Endophytic bacterial communities in ginseng and their antifungal activity against pathogens. Microb. Ecol. 54, 341-351.
7. Cho, S. J., S. R. Park, M. K. Kim, W. J. Lim, S. K. Ryu, C. L. An, S. Y. Hong, and et al. 2002. Endophytic Bacilus sp. isolated from the interior of ballon flower root. Biosci. Biotechnol. Biochem. 66, 1270-1275.
8. Costacurta, A. and J. Vanderleyden. 1995. Synthesis of phytohormones by plant associated bacteria. Critical Rev. Microbiol. 21, 1-18.
9. Feng, Y., D. Shen, and W. Song. 2006. Rice endophyte Pantoea agglomerans YS19 promotes host plant growth and affects allocations of host photosynthates. J. Appl. Microbiol. 100, 938-945.
10. Ferreira, E. P., A. N. Dusi, G. R. Xavier, and N. G. Rumjanek. 2008. Rhizosphere bacterial communities of potato cultivars evaluated through PCR-DGGE profiles. Pesq. Agropec. Bras. 43, 605-612.
11. Goldstein, A. H. 1986. Bacterial solubilization of mineral phosphates: historical perspective and future prospects. Am. J. Alter. Agric. 1, 51-57.
12. Goldstein, A. H., R. D. Rogers, and G. Mead. 1993. Separating phosphate from ores via bioprocessing. Biotechnology 11, 1250-1254.
13. Hartmann, A., M. Singh, and W. Klingmueller. 1983. Isolation and characterization of Azospirillum mutants excreting high amounts of indole acetic acid. Can. J. Microbiol. 29, 916-923.
14. Jha, P. N. and A. Kumar. 2007. Endophytic colonization of Typha australis by a plant growth-promoting bacterium Klebsiella oxytoca strain GR-3. J. Appl. Microbiol. 103, 1311-1320.
15. Kanvinde, L. and G. R. K. Sastry. 1990. Agrobacterium tumefaciens is a diazotrophic bacterium. Appl. Environ. Microbiol. 56, 2087-2092.
16. Kobayashi, D. Y. and J. D. Palumbo. 2000. Bacterial endophytes and their effects on plants and uses in agriculture, pp. 199-233. In C. W. Bacon and J. F. White (eds.), Microbial endophytes. Marcel Dekker, Inc., New York, N. Y., USA.
17. Lacava, P. T., M. E. Silva-Stenico, W. L. Araújo, V. C. Simionato, E. Carrilho, S. M. Tsai, and J. L. Azevedo. 2008. Detection of siderophores in endophytic bacteria Methylobacterium spp. associated with Xylella fastidiosa subsp. Pauca. Pesq. Agropec. Bras. 43, 521-528.
18. Lodewyck, C., J. Vangronsveld, F. Porteous, E. R. B. Moore, S. Taghavi, M. Mezgeay, and D. V. D. Lelie. 2002. Endophytic bacteria and their potential application. Crit. Rev. Plant. Sci. 86, 583-606.
19. McGinnis, S. and T. L Madden. 2004. BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 32, 20-25.
20. Park, M. S., S. R. Jung, M. S. Lee, K. O. Kim, J. O. Do, K. H. Lee, S. B. Kim, and K. S. Bae. 2005a. Isolation and characterization of bacteria associated with two sand dune plant species, Calystegia soldanella and Elymus mollis. J. Microbiol. 43, 219-227.
21. Park, M., C. Kim, J. Yang, H. Lee, W. Shin, S. Kim, and T. Sa. 2005b. Isolation and characterization of diazotrophic growth promoting bacteria from rhizosphere of agricultural crops of Korea. Microbiol. Res. 160, 127-133.
22. Potrich, D. P., L. M. P. Passaglia, and I. S. Schrank. 2003. Partial characterization of nif genes from the bacterium Azospirillum amazonense. Braz. J. Med. Biol. Rev. 34, 1105-1113.
23. Qiu, F., Y. Huang, L. Sun, X. Zhang, Z. Liu, and W. Song. 2007. Leifsonia ginsengi sp. nov., isolated from ginseng root. Int. J. Syst. Evol. Microbiol. 57, 405-408.
24. Ramesh, R., A. A. Joshi, and M. P. Ghanekar. 2009. Pseudomonads: major antagonistic endophytic bacteria to suppress bacterial wilt pathogen, Ralstonia solanacearum in the eggplant (Solanum melongena L). World J. Microbiol. Biotechnol. 25, 47-55.
25. Reinhold-Hurek, B. and T. Hurek. 1998. Life in grasses: diazotrophic endophytes. Trends Microbiol. 6, 139-144.
26. Schwyn, B. and J. B. Neilands. 1987. Universal chemical assay for the detection and determination of siderophores. Anal. Biochem. 160, 47-56.
27. Seghers, D., L. Wittebolle, E. M. Top, W. Verstraete, and S. D. Siciliano. 2004. Impact of agricultural practice on the Zea mays L. endophytic community. Appl. Environ. Microbiol. 70, 1475-1482.
28. Sharma, A. and B. N. Johri. 2003. Growth promoting influence of siderophore-producing Pseudomonas strains GRP3A and PRS9 in maize (Zea mays L.) under iron limiting conditions. Microbiol. Res. 158, 243-248.
29. Siciliano, S. D., N. Fortin, A. Mihoc, G. Wisse, S. Labelle, D. Beaumier, D. Ouellette, and et al. 2001. Selection of specific endophytic bacterial genotypes by plants in response to soil contamination. Appl. Environ. Microbiol. 67, 2469-2475.
30. Steward, G. F., B. D. Jenkins, B. B. Ward, and J. P. Zehr. 2004. Development and testing of a DNA microarray to assess nitrogenase (nifH) gene diversity. Appl. Environ. Microbiol. 70, 1455-1465.
31. Surette, M. A., A. V. Sturz, R. R. Lada, and J. Nowak. 2003. Bacterial endophytes in processing carrots (Daucas carota L. var. sativus): their location, population density, biodiversity and their effects on plant growth. Plant Soil 253, 381-390.
32. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. 0. Mol. Biol. Evol. 24, 1596-1599.
33. Tompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
34. Velázquez, E., M. Rojas, M. J. Lorite, R. Rivas, J. L. Zurdo-Piñeiro, M. Heydrich, and E. J. Bedmar. 2008. Genetic diversity of endophytic bacteria which could be found in the apoplastic sap of the medullary parenchym of the stem of healthy sugarcane plants. J. Basic Microbiol. 48, 118-124.
35. Yu, W. J., B. J. Lee, S. Y. Nam, D. C. Yang, and Y. W. Yun. 2003. Modulating effects of Korean ginseng saponins on ovarian function immature rats. Biol. Pharm. Bull. 26, 2574-2580.