Endophytic bacterial communities in ginseng and their antifungal activity against pathogens

Microbial Ecology

Volumn 54, Issue 2, 2007, Pages 341-351

  Cho, Kye Man ^a   Hong, Su Young ^a   Lee, Sun Mi ^a   Kim, Yong Hee ^a   Kahng, Goon Gjung ^a   Lim, Yong Pyo ^b   Kim, Hoon ^c   Yun, Han Dae ^a  

^a Gyeongsang National University   (South Korea)

^b Chungnam National University   (South Korea)

^c Sunchon National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RNA 16S;

ANTIBIOSIS; ARTICLE; BACTERIUM; CLASSIFICATION; DNA BASE COMPOSITION; ECOSYSTEM; FUNGUS; GENETICS; GINSENG; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; KOREA; MICROBIOLOGY; PLANT ROOT; RNA GENE;

ANTIBIOSIS; BACTERIA; BASE COMPOSITION; DNA, BACTERIAL; ECOSYSTEM; FUNGI; GENES, RRNA; KOREA; PANAX; PLANT ROOTS; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); BACILLUS (BACTERIUM); BACILLUS SP.; BACTERIA (MICROORGANISMS); FIRMICUTES; FUNGI; HYPHOMYCETES; PAENIBACILLUS POLYMYXA; PANAX GINSENG; PECTOBACTERIUM; PROTEOBACTERIA; PSEUDOMONAS; PSEUDOMONAS POAE; THANATEPHORUS CUCUMERIS;

EID: 34547608146     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-007-9208-3     Document Type: Article

References (58)

1. Al-Mallah, MK, Davey, MR, Cooking, EC (1987) Enzymatic treatment of clover root hairs removes a barrier to Rhizobium-host specificity. Biotechnology 5: 1319-1322
2. An, JM, Kim, YK, Lim, WJ, Hong, SY, An, CL, Shin, EC, Cho, KM, Choi, BR, Kang, JM, Lee, SM, Kim, H, Yun, HD (2005) Evaluation of a novel bifunctional xylanse and cellulase constructed by gene fusion. Enzyme Microb Technol 36: 989-995
3. Araújo, WL, Marcon, J, Maccheroni, W, Jr, van Elsas, JD, van Vuurde, JWL, Azevedo, JL (2002) Diversity of endophytic bacterial populations and their interaction with Xylella fatidiosa in citrus plants. Appl Environ Microbiol 68: 4906-4914
4. Ash, C, Farrow, JA, Priest, FG, Collins, MD (1993) Molecular identification of rDNA group 3 bacilli (Ash, Fallow, Wallbanks, Collins) using a PCR probe test. Antonie Van Leeuwenhoek 64: 253-260
5. Assigbetse, K, Gueye M, Thioulouse, J, Duponnois R (2005) Soil bacterial diversity responses to root colonization by an ectomycorrhizal fungus are not root-growth-dependent. Microb Ecol 50: 350-359
6. Bent, E, Chanway, CP (2002) Potential for misidentification of a spore-forming Paenibacillus polymyxa isolate as an endophyte by using culture-based methods. Appl Environ Microbiol 68: 4650-4652
7. Berg, G, Krechel, A, Ditz, M, Sikora RA, Ulrich, A, Hallmann, J (2005) Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi. FEMS Microbiol Ecol 51: 215-229
8. Carruthers, FL, Conner, AJ, Mashanty, HK (1994) Identification of a genetic locus in Pseudomonas aureofaciens involved in fungal inhibition. Appl Environ Microbiol 60: 71-77
9. Chen, C, Bauske, EM, Mussion, G, Rodriquez-Kabana, R, Kloepper, JW (1995) Biological control on Fusarium wilt on cotton by use of endophytic bacteria. Biol Control 5: 83-91
10. Chi, F, Shen, SH, Cheng, HP, Jing, YX, Yanni, YG, Dazzo, FB (2005) Ascending migration of endophytic rhizobia from roots to leaves, inside rice plants and assessment of benefits to rice growth physiology. Appl Environ Microbiol 71: 7271-7278
11. Cho, SJ, Park, SR, Kim, MK, Lim, WJ, Ryu, SK, An, CL, Hong, SY, Lee, YH, Jeong, SG, Cho, YU, Yun, HD (2002) Endophytic Bacillus sp. isolated from the interior of ballon flower root. Biosci Biotechnol Biochem 66: 1270-1275
12. Conn, VM, Franco, CMM (2004) Effect of microbial inoculants on the indigenous actinobacterial endophyte population in the roots of wheat as determined by terminal restriction fragment length polymorphism. Appl Environ Microbiol 70: 6407-6413
13. Coombs, JT, Franco, CMM (2003) Isolation and identification of Actinobacteria from surface-sterilized wheat roots. Appl Environ Microbiol 69: 5603-5608
14. Dalton, DA, Kramer, S, Azios, N, Fusaro, S, Cahill, E, Kennedy, C (2004) Endophytic nitrogen fixation in dune grasses (Ammophila arenaria and Elymus mollis) from Oregon. FEMS Microbiol Ecol 49: 469-479
15. Dijksterhuis, J, Sanders, M, Gorris, LG, Smid, EJ (1999) Antibiosis plays a role in the context of direct interaction during antagonism of Paenibacillus polymyxa towards Fusarium oxysporum. J Appl Microbiol 86: 13-21
16. Dujiff, BJ, Gianinazzi-Pearson, V, Lemanceau, P (1997) Involvement of the outer membrane lipopolysaccharides in the endophytic colonization of tomato roots by biocontrol Pseudomonas fluorescens strain WCS417r. New Phytol 135: 325-334
17. Elvira-Recuenco, M, van Vuurde, JWL (2000) Natural incidence of endophytic bacteria in pea cultivars under field conditions. Can J Microbiol 46: 1036-1041
18. Garbeva, P, van Overheek, LS, van Vuurde, JWI, van Elsas, JD (2001) Analysis of endophytic bacterial communities of potato by plating and denaturing gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments. Microb Ecol 41: 360-383
19. Germida, JJ, Siciliano, SD, de Freitas, JR, Seib, AM (1998) Diversity of root-associated bacteria associated with field-grown canola (Brassica napus L.) and wheat (Triticum aestivum L.). FEMS Microbiol Ecol 26: 43-50
20. Granér, G, Persson, P, Meijer, J, Alström, S (2003) A study on microbial diversity in different cultivars of Brassica napusin relation to its wilt pathogen, Verticillium longisporum. FEMS Microbiol Lett 224: 269-276
21. Hallmann, J, Hallmann, QA, Mahaffee, WF, Kloepper, JW (1997) Bacterial endophytes in agricultural crops. Can J Microbiol 43: 895-914
22. Huan, JS (1986) Ultrastructure of bacterial penetration in plants. Annu Rev Phytopathol 24: 141-157
23. Jeon, YH, Chang, SB, Hwang, IG, Kim, YH (2003) Involvement of growth-promoting rhizobacterium Paenibacillus polymyxa in root rot of stored Korean ginseng. J Microbiol Biotechnol 13: 881-891
24. Kim, CY, Im, HW, Kim, HK, Hur, H (2001) Accumulation of 2,5-dimethoxy-1,4-benzoquinone in suspension cultures of Panax ginseng by a fungal elicitor preparation and a yeast elicitor preparation. Appl Microbiol Biotechnol 56: 239-242
25. Kobayashi, DY, Palumbo, JD (2000) Bacterial endophytes and their effects on plants and uses in agriculture. In: Bacon, CW, White, JF, Jr (Eds.) Microbial Endophytes, Marcel Dekker, New York
26. Lilley, AK, Fry, JC, Bailey, MJ, Day, MJ (1996) Comparison of aerobic heterotropic taxa isolated from four root domains of mature sugar beet (Beta vulgaris). FEMS Microbiol Ecol 21: 231-242
27. Lima, AOS, Quecine, MC, Fungaro, MHP, Andreote, FD, Maccheroni, W, Jr, Araújo, WL, Silva-Filho, MC, Pizzirani-Kleiner, AA, Azevedo, JL (2005) Molecular characterization of a β-1,4-endoglucanase from an endophytic Bacillus pumilus strain. Appl Microbiol Biotechnol 68: 57-65
28. Lin, TS, Chen, CL, Chang, LK, Tschen, JS, Liu, ST (1999) Functional and transcriptional analyses of a fengycin synthesase gene fenC, Bacillus subtilis. J Bacteriol 181: 5060-5067
29. Mahaffee, WF, Kloepper, JW (1997) Temporal changes in the bacterial communities of soil, rhizosphere, and endorhiza associated with field-grown cucumber (Cucumis sativus L.). Microb Ecol 34: 210-223
30. McGinnis, S, Madden, TL (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32: 20-25
31. McInroy, JA, Kloepper, JW (1995) Survey of indigenous bacterial endophytes from cotton and sweet corn. Plant Soil 173: 337-342
32. Miyamoto, T, Kawhara, M, Minamisawa, K (2004) Novel endophytic nitrogen-fixing clostridia from the grass Miscanthus sinensis as reveal by terminal restriction fragment length polymorphism analysis. Appl Environ Microbiol 70: 6580-6586
33. Mundt, JO, Hinkle, JO (1976) Bacteria within ovules and seeds. Appl Environ Microbiol 32: 694-698
34. Muñoz-Rojas, J, Fuentes-Ramírez, LE, Caballero-Mellado, J (2005) Antagonism among Gluconacetobacter diazotrophicus strains in culture media and in endophytic association. FEMS Microbiol Ecol 54: 57-66
35. Nielsen, P, Sørensen, J (1997) Multi-target medium-independent fungal antagonism by hydrolytic enzymes in Paenibacillus polymyxa and Bacillus pumilus strains from barley rhizosphere. FEMS Microbiol Ecol 22: 183-192
36. Nielsen, TH, Sørensen, D, Tobiasen, C, Andersen, JB, Chrssistophersen, C, Givskov, M, Sørensen, J (2002) Antibiotic and biosurfactant properties of cyclic lipopeptides produced by fluorescent Pseudomonas spp. from the sugar beet rhizosphere. Appl Environ Microbiol 68: 3414-3423
37. Park, SR, Kim, MK, Kim, JO, Bae, DW, Cho, SJ, Cho, YU, Yun, HD (2000) Characterization of Erwinia chrysanthemi PY35 cel and pel gene existing in tandem and rapid identification of their gene products. Biochem Biophys Res Commun 268: 420-425
38. Park, YW, Lim, ST, Cho, SJ, Yun, HD (1997) Characterization of Erwinia carotovora subsp.carotovora LY34 endo-1,4-beta-glucanase gene and rapid identification of their gene products. Biochem Biophys Res Commun 241: 636-641
39. Reiter, B, Pfeifer, U, Schwab, H, Sessitsch, A (2002) Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp.atroseptica. Appl Environ Microbiol 68: 2261-2268
40. Reva, ON, Smirnov, VV, Pettersson, B, Priest, FG (2002) Bacillus endophyticus sp. nov., isolated from the inner tissues of cotton plants (Gossypium sp.). Int J Syst Evol Microbiol 52: 101-107
41. Safiyazov, JS, Mannanov, RN, Sattarova, RK (1995) The use of bacterial antagonists for the control of cotton disease. Field Crops Res 43: 51-54
42. Saito, N, Nei, M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol: 406-425
43. Sambrook, J, Russel, DW (2001) Molecular cloning: a laboratory manual, 3th ed. In: Seghers, D, Wittebolle, L, Top, EM (Eds.) Cold Spring Harbor Laboratory Press, Cold Spring Harbor
44. Santamaría, J, Bayman, P (2005) Fungal epiphytes and endophytes of coffee leaves (Coffea Arabica). Microb Ecol 50: 1-8
45. Seghers, D, Wittebolle, L, Top, EM, Verstraete, W, Siciliano, SD (2004) Impact of agricultural practice on the Zea mays L. endophytic community. Appl Environ Microbiol 70: 1475-1482
46. Siciliano, SD, Fortin, N, Mihoc, A, Wisse, G, Labelle, S, Beaumier, D, Ouellette, D, Roy, R, Whyte, LG, Banks, MK, Schwab, P, Lee, K, Greer, CW (2001) Selection of specific endophytic bacterial genotypes by plants in response to soil contamination. Appl Environ Microbiol 67: 2469-2475
47. Siciliano, SD, Germida, JJ (1999) Taxonomic diversity of bacteria associated with the roots of field-grown transgenic Brassica napus cv. Quest, compared to the non-transgenic B. napus cv. Excel and B. rapa cv. Parkland. FEMS Microbiol Ecol 29: 263-272
48. Sturz, AV, Chrssistie, BR, Matheson, BG, Arsenault, WJ, Buchanan, NA (1999) Endophytic bacterial communities in the periderm of potato tubers and their potential to improve resistance to soil-borne pathogens. Plant Pathol 48: 360-369
49. Sturz, AV, Chrssistie, BR, Matheson, BG, Nowak, J (1997) Biodiversity of endophytic bacteria which colonize red clover nodules, roots, stems and foliage and their influence on host growth. Biol Fertil Soils 25: 13-19
50. Sturz, AV, Nowak, J (2000) Endophytic communities of rhizobacter and the strategies required to create yield enhancing associations with crops. Appl Soil Ecol 15: 183-190
51. Suto, M, Takebayashi, M, Saito, K, Tanaka, M, Yokota, A, Tomita, F (2002) Endophytes as producers of xylanase. J Biosci Bioeng 93: 88-90
52. Timmusk, S, Grantcharova, N, Wagner, EGH (2005) Paenibacillus polymyxa invades plant roots and forms biofilms. Appl Environ Microbiol 71: 7292-7300
53. Tompson, JD, Higgins, DG, Gibson, TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
54. Verma, SC, Ladha, JK, Tripathi, AK (2001) Evaluation of plant growth promoting and colonization ability of endophytic diazotrophs from deep water rice. J Biotechnol 81: 127-141
55. Yao, S, Gao, X, Fuchsbauer, N, Hillen, W, Vater, J, Wang, J (2003) Cloning, sequencing, and characterization of the genetic region relevant to biosynthesis of the lipopeptides itulin A and surfactin in Bacillus subtilis. Curr Microbiol 47: 272-277
56. Yu, WJ, Lee, BJ, Nam, SY, Yang, DC, Yun, YW (2003) Modulating effects of Korean ginseng saponins on ovarian function immature rats. Biol Pharm Bull 26: 1574-1580
57. Yu, YH, Ohh, SH (1993) Research on ginseng diseases in Korea. Kor J Ginseng Sci 17: 61-68
58. Zinniel, DK, Lambrecht, P, Harris, NB, Feng, Z, Kuczmarski, D, Higley, P, Ishmaru, CA, Arunakumari, A, Barletta, RG, Vidaver, AK (2002) Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants. Appl Environ Microbiol 68: 2198-2208