Isolation and characterization of ornithine decarboxylase gene from flounder (Paralichthys olivaceus)

Marine Biotechnology

Volumn 6, Issue 5, 2004, Pages 453-462

  Lee, Jae Hyung ^a   Son, Mi Young ^a   Yoon, Moon Young ^b   Choi, Jung Do ^c   Kim, Young Tae ^a  

^a Pukyong National University   (South Korea)

^b Hanyang University   (South Korea)

^c Chungbuk National University   (South Korea)

Author keywords

Flounder (Paralichthys olivaceus); Ornithine decarboxylase (ODC); Pyridoxal 5 phosphate (PLP)

Indexed keywords

BIOLOGICAL ORGANS; CHROMATOGRAPHIC ANALYSIS; CLONING; ECOSYSTEMS; ENZYMES; GENETIC ENGINEERING; OCEAN HABITATS;

HISTIDINE; ISOLATION; ORNITHINE DECARBOXYLASE (ODC); POLYMERASE CHAIN REACTIONS;

GENES;

ENZYME; FLATFISH; GENE EXPRESSION;

DANIO RERIO; ESCHERICHIA COLI; PARALICHTHYS OLIVACEUS; PLEURONECTOIDEI;

COMPLEMENTARY DNA; MESSENGER RNA; ORNITHINE DECARBOXYLASE; PRIMER DNA;

AFFINITY CHROMATOGRAPHY; AMINO ACID SEQUENCE; ANIMAL; ANIMAL EMBRYO; ARTICLE; BRAIN; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; ENZYMOLOGY; FLOUNDER; GENE EXPRESSION; GENETICS; KIDNEY; LIVER; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BRAIN; CHROMATOGRAPHY, AFFINITY; CLUSTER ANALYSIS; DNA PRIMERS; DNA, COMPLEMENTARY; EMBRYO, NONMAMMALIAN; FLOUNDER; GENE EXPRESSION; KIDNEY; LIVER; MOLECULAR SEQUENCE DATA; ORNITHINE DECARBOXYLASE; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 16844384618     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-004-4100-3     Document Type: Article

References (50)

1. J.J. Almrud M.A. Oliveira A.D. Kern N.V. Grishin M.A. Philips M.L. Hackert 2000 Crystal structure of human ornithine decarboxylase at 2.1 Å resolution: structual insights to antizyme binding J Mol Biol 295 7 16
2. T. Bassez J. Paris R Omilli C. Dorel H.B. Osborne 1990 Post-transcriptional regulation of ornithine decarboxylase in Xenopus laevis oocytes Development 110 955 962
3. Y. Cao H. Zhao T. Hollemann Y. Chen H. Grunz 2001 Tissue-specific expression of an ornithine decarboxylase paralogue, XODC2, in Xenopus laevis Mech Dev 102 243 246
4. Z.P. Chen K.Y. Chen 1992 Mechanism of regulation of ornithine decarboxylase gene expression by asparagines in a variant mouse neuroblastoma cell line J Biol Chem 267 6946 6951
5. J.J. Cho J.H. Lee S-K. Kim T-J. Choi Y.T. Kim 1999 cDNA encoding nm23/NDP kinase gene from Korean tiger shark Scyliorhinus torazame Mar Biotechnol 1 131 136
6. J.J. Cho B.K. Sung J.H. Lee J-K. Chung T-J. Choi Y.T. Kim 2001 cDNA for an immune response gene encoding low molecular weight polypeptide from flounder, Paralichthys olivaceus Mol Cells 11 226 230
7. P. Coffino 1998 Marine Biotechnology J.M. Peters J.D. Harris D. Finley Ubiquitin and the Biology of the Cell Plenum Press New York, N.Y. 411 427
8. P. Coffino 2001 Regulation of cellular polyamines by antizyme Nat Rev Mol Cell Biol 2 188 194
9. S.S. Cohen 1998 A Guide to the Polyamines Oxford Univ Press New York, N.Y. 231 259
10. C.S. Coleman B.A. Stanley R. Viswanath A.E. Pegg 1994 Rapid exchange of subunits of mammalian ornithine decarboxylase J Biol Chem 269 3155 3158
11. J.M. Gershoni G.E. Palade 1983 Protein blotting: principles and application Anal Biochem 131 1 15
12. A. Grens I.E. Scheffler 1990 The 5'- and 3'-untranslated regions of ornithine decarboxylase mRNA affect the translational efficiency J Biol Chem 265 11810 11816
13. A. Grens C. Steglich R. Pilz I.E. Scheffler 1989 Nucleotide sequence of the Chinese hamster ornithine decarboxylase gene Nucleic Acids Res 17 10497
14. T. Hascilowicz N. Murai S. Matsufuji Y. Murakami 2002 Regulation of ornithine decarboxylase by antizymes and antizyme inhibitor in zebrafish (Danio rerio) Biochim Biophys Acta 1578 21 28
15. S. Hayashi Y. Murakami 1995 Rapid and regulated degradation of ornithine decarboxylase Biochem J 306 1 10
16. S. Hayashi Y Murakmi S. Matsufuji 1996 Ornithine decarboxylase antizyme: a novel type of regulatory protein Trends Biochem Sci 21 27 30
17. O. Heby L. Persson 1990 Molecular genetics of polyamin synthesis in eukaryotic cells Trends Biochem Sci 15 153 158
18. I. Holm L. Persson O. Heby N. Seiler 1988 Feedback regulation of polyamine synthesis in Ehrlich ascites tumor cells: analysis using nonmetabolizable derivatives of putrescine and spermine Biochim Biophys Acta 972 239 248
19. G. Johannes F.G. Berger 1992 Alterations in mRNA translation as a mechanism for the modification of enzyme synthesis during evolution: the ornithine decarboxylase model J Biol Chem 267 10108 10115
20. R. Johnson G. Bulfield 1992 Molecular cloning and sequence analysis of a chicken ornithine decarboxylase cDNA Anim Genet 23 403 409
21. C. Kahana D. Nathans 1985 Nucleotide sequence of murine ornithine decarboxylase mRNA Proc Natl Acad Sci U S A 82 1673 1677
22. A. Katz C. Kahana 1987 Transcriptional activation of mammalian ornithine decarboxylase during stimulated growth Mol Cell Biol 7 2641 2643
23. A.D. Kern M.A. Oliveira P. Coffino M.L. Hackert 1999 Structure of mammalian ornithine decarboxylase at 1.6 Å resolution: stereochemical implications of PLP-dependent amino acid decarboxylases Structure Fold Des 7 567 581
24. D.S. Kim Y.T Kim 1999 Identification of an embryonic growth factor IGF-II from the central nervous system of the teleost, flounder, and its expressions in adult tissues J Microbiol Biotechnol 9 113 118
25. Y.T. Kim C.C. Richardson 1993 Bacteriophage T7 gene 2.5 protein: an essential protein for DNA replication Proc Natl Acad Sci U S A 90 10173 10177
26. Y.T. Kim C.C. Richardson 1994 Acidic carboxyl-terminal domain of gene 2.5 protein of bacteriophage T7 is essential for protein-protein interactions J Biol Chem 269 5270 5278
27. Y.T. Kim Y.H. Song J.E. Churchich 1997 Recombinant brain 4-aminobutyrate aminotransferases: overexpression, purification, and identification of Lys-330 at the active site Biochim Biophys Acta 1337 248 256
28. U.K. Laemmli 1970 Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 680 685
29. E-Y. Lee H-H. Park Y.T. Kim T-J. Choi 2001 Cloning and sequence analysis of the interleukin-8 gene from flounder (Paralichthys olivaceus) Gene 274 237 243
30. X. Li P. Coffino 1993 Degradation of ornithine decarboxylase: exposure of the C-terminal target by a polyamine-inducible inhibitory protein Mol Cell Biol 13 2377 2383
31. J.A. Moshier J.D. Gilbert M. Skunca J. Dosescu K.M. Almodovar G.D. Luk 1990 Isolation and expression of a human ornithine decarboxylase gene J Biol Chem 265 4884 4892
32. S. Matsufuji T. Matsufji Y. Miyazaki Y. Murakami J.F. Atkins R.F. Gesteland S. Hayashi 1995 Autoregulatory frameshifting in decoding mammalian ornithine decarboxylase antizyme Cell 80 51 60
33. Y. Murakami S. Hayashi 1985 Role of antizyme in degradation of ornithine decarboxylase in HTC cells Biochem J 226 893 896
34. Y. Murakami S. Matsufuji T. Kameji S. Hayashi K. Igarashi T. Tamura K. Tanaka A. Ichihara 1992 Ornithine decarboxylase is degraded by the 26S proteasome without ubiquitination Nature 360 597 599
35. Y. Murakami S. Matsufuji S. Hayashi N. Tanahashi K. Tanaka 2000 Degradation of ornithine decarboxylase by the 26S proteasome Biochem Biophys Res Commun 267 1 6
36. A.L. Osterman L.N. Kinch N.V. Grishin M.A. Phillips 1995a Acidic residues important for substrate binding and cofactor reactivity in eukaryotic ornithine decarboxylase identified by alanine scanning mutagenesis J Biol Chem 270 11797 11802
37. A.L. Osterman D.V. Lueder M. Quick D. Myers B.J. Canagarajah M.A. Phillips 1995b Domain organization and a protease-sensitive loop in eukaryotic ornithine decarboxylase Biochemistry 34 13431 13436
38. A.E. Pegg 1986 Recent advances in the biochemistry of polyamines in eukaryotes Biochem J 234 249 262
39. L. Persson I. Holm O. Heby 1988 Regulation of ornithine decarboxylase mRNA translation by polyamines: studies using a cell-free system and a cell line with an amplified ornithine decarboxylase gene J Biol Chem 263 3528 3533
40. M.A. Phillips P. Coffino C.C. Wang 1987 Cloning and sequencing of the ornithine decarboxylase gene from Trypanosoma brucei: implications for enzyme turnover and selective difluoromethylornithine inhibition J Biol Chem 262 8721 8727
41. R. Poulin L. Lu B. Ackerman P. Bey A.E. Pegg 1992 Mechanism of the irreversible inactivation of mouse ornithine decarboxylase by α-difluoromethyl ornithine: characterization of sequence at the inhibitor and coenzyme binding sites J Biol Chem 267 150 158
42. S. Pyronnet L. Pradayrol N. Sonenberg 2000 A cell cycle-dependent internal ribosome entry site Mol Cell 5 607 616
43. E. Rom C. Kahana 1993 Isolation and characterization of the Drosophila ornithine decarboxylase locus: evidence for the presence of two transcribed ODC genes in the Drosophila genome DNA Cell Biol 12 499 508
44. L.M. Shantz A.E. Pegg 1999 Translational regulation of ornithine decarboxylase and other enzymes of the polyamine pathway Int J Biochem Cell Biol 31 107 122
45. C.W. Tabor H. Tabor 1984 Polyamines Annu Rev Biochem 53 749 790
46. K.E. Tobias C. Kahana 1993 Intersubunit location of the active site of mammalian ornithine decarboxylase as determined by hybridization of site-directed mutants Biochemistry 32 5842 5847
47. Y. Van de Peer R. De Wachter 1994 TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment Comput Appl Biosci 10 569 570
48. H.J. van Kranen L. van de Zande C.F. van Kreijl A. Bisschop B. Wieringa 1987 Cloning and nucleotide sequence of rat ornithine decarboxylase cDNA Gene 60 145 155
49. Y. Wang U. Bachrach 2000 A luminescence-based test for determining ornithine decarboxylase activity Anal Biochem 287 299 302
50. J. Yao D. Zadworny U. Kuhnlein J.F. Hayes 1995 Molecular cloning of a bovine ornithine decarboxylase cDNA and its use in the detection of restriction fragment length polymorphisms in Holsteins Genome 38 325 331