Trypanosomes are monophyletic: Evidence from genes for glyceraldehyde phosphate dehydrogenase and small subunit ribosomal RNA

International Journal for Parasitology

Volumn 34, Issue 12, 2004, Pages 1393-1404

  Hamilton, Patrick B ^a   Stevens, Jamie R ^b   Gaunt, Michael W ^c   Gidley, Jennifer ^a   Gibson, Wendy C ^a  

^a UNIVERSITY OF BRISTOL   (United Kingdom)

^b UNIVERSITY OF EXETER   (United Kingdom)

^c LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE   (United Kingdom)

Author keywords

18S rRNA; Evolution; GAPDH; Phylogeny; Trypanosoma; Trypanosomatidae

Indexed keywords

GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; SMALL SUBUNIT RIBOSOMAL RNA;

EVOLUTION; PARASITOLOGY; PHYLOGENY;

AMINO ACID SEQUENCE; ARTICLE; CLADISTICS; CONTROLLED STUDY; GENETIC ANALYSIS; GENUS; LEISHMANIA; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; TRYPANOSOMA; UNINDEXED SEQUENCE;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; EVOLUTION; GLUCOSEPHOSPHATE DEHYDROGENASE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, SMALL NUCLEAR; TRYPANOSOMA;

AMPHIBIA; HIRUDINIDA; INSECTA; LEISHMANIA MAJOR; PROTOZOA; TRYPANOSOMA; TRYPANOSOMA BRUCEI; TRYPANOSOMA CRUZI; TRYPANOSOMATIDAE; VERTEBRATA;

EID: 7944227152     PISSN: 00207519     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijpara.2004.08.011     Document Type: Article

References (53)

1. C.A. Adjé, F.R. Opperdoes, and P.A. Michels Molecular analysis of phosphoglycerate kinase in Trypanoplasma borreli and the evolution of this enzyme in kinetoplastida Gene 217 1998 91 99
2. F. Alvarez, M.N. Cortinas, and H. Musto The analysis of protein coding genes suggests monophyly of Trypanosoma Mol. Phylogenet. Evol. 5 1996 333 343
3. J.R. Baker The origins of parasitism in the protists Int. J. Parasitol. 24 1994 1131 1137
4. J.D. Barry Antigenic variation during Trypanosoma vivax infections of different host species Parasitology 92 1986 51 65
5. T. Cavalier-Smith Kingdom protozoa and its 18 phyla Microbiol. Rev. 57 1993 953 994
6. D. Dolezel, M. Jirku, D.A. Maslov, and J. Lukes Phylogeny of the bodonid flagellates (Kinetoplastida) based on small-subunit rRNA gene sequences Int. J. Syst. Evol. Micr. 50 2000 1943 1951
7. J. Felsenstein Cases in which parsimony or compatibility methods will be positively misleading Syst. Zool. 27 1978 401 410
8. A.P. Fernandes, K. Nelson, and S.M. Beverley Evolution of nuclear ribosomal RNAs in kinetoplastid protozoa: perspectives on the age and origins of parasitism Proc. Natl Acad. Sci. USA 90 1993 11608 11612
9. L.A. Fothergill-Gilmore, and P.A.M. Michels Evolution of glycolysis Prog. Biophys. Mol. Biol. 59 1993 105 235
10. P.R. Gardiner Recent studies of the biology of Trypanosoma vivax Adv. Parasitol. 28 1989 229 317
11. M.W. Gaunt, and M.A. Miles An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks Mol. Biol. Evol. 19 2002 748 761
12. E. Gomez, A.M. Valdes, D. Pinero, and R. Hernandez What is a genus in the Trypanosomatidae family? Phylogenetic analysis of two small rRNA sequences Mol. Biol. Evol. 8 1991 254 259
13. J. Haag, C. O'hUigin, and P. Overath The molecular phylogeny of trypanosomes: evidence for an early divergence of the Salivaria Mol. Biochem. Parasitol. 91 1998 37 49
14. R.B. Hallick, L. Hong, R.G. Drager, M.R. Favreau, A. Monfort, B. Orsat, A. Spielmann, and E. Stutz Complete sequence of Euglena gracilis chloroplast DNA Nucleic Acids Res. 21 1993 3537 3544
15. V. Hannaert, M. Blaauw, L. Kohl, S. Allert, F.R. Opperdoes, and P.A. Michels Molecular analysis of the cytosolic and glycosomal glyceraldehyde-3- phosphate dehydrogenase in Leishmania mexicana Mol. Biochem. Parasitol. 55 1992 115 126
16. V. Hannaert, F.R. Opperdoes, and P.A. Michels Comparison and evolutionary analysis of the glycosomal glyceraldehyde-3-phosphate dehydrogenase from different Kinetoplastida J. Mol. Evol. 47 1998 728 738
17. T. Hashimoto, Y. Nakamura, T. Kamaishi, J. Adachi, F. Nakamura, K. Okamoto, and M. Hasegawa Phylogenetic place of kinetoplastid protozoa inferred from a protein phylogeny of elongation factor 1 alpha Mol. Biochem. Parasitol. 70 1995 181 185
18. K. Henze, A. Badr, M. Wettern, R. Cerff, and W. Martin A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution Proc. Natl Acad. Sci. USA 92 1995 9122 9126
19. C.A. Hoare The Trypanosomes of Mammals 1972 Blackwell Scientific Publications Oxford
20. J.P. Huelsenbeck, and F. Ronquist MRBAYES: Bayesian inference of phylogenetic trees Bioinformatics 17 2001 754 755
21. A.L. Hughes, and H. Piontkivska Molecular phylogenetics of Trypanosomatidae: contrasting results from 18S rRNA and protein phylogenies Kinetoplastid Biol. Dis. 2 2003 15
22. A.L. Hughes, and H. Piontkivska Phylogeny of Trypanosomatidae and Bodonidae (Kinetoplastida) based on 18S rRNA: evidence for paraphyly of Trypanosoma and six other genera Mol. Biol. Evol. 20 2003 644 652
23. D.T. Jones, W.R. Taylor, and J.M. Thornton The rapid generation of mutation data matrices from protein sequences Comput. Appl. Biosci. 8 1992 275 282
24. K.V. Kardong Vertebrates: Comparative Anatomy, Function, Evolution 2002 McGraw-Hill New York
25. G. Kendall, A.F. Wilderspin, F. Ashall, M.A. Miles, and J.M. Kelly Trypanosoma cruzi glycosomal glyceraldehyde-3-phosphate dehydrogenase does not conform to the 'hotspot' topogenic signal model Eur. Mol. Biol. Org. J. 9 1990 2751 2758
26. L.F. Landweber, and W. Gilbert Phylogenetic analysis of RNA editing: a primitive genetic phenomenon Proc. Natl Acad. Sci. USA 91 1994 918 921
27. J. Lukes, G.J. Arts, J. Van den Burg, A. de Haan, F. Opperdoes, P. Sloof, and R. Benne Novel pattern of editing regions in mitochondrial transcripts of the cryptobiid Trypanoplasma borreli Eur. Mol. Biol. Org. J. 13 1994 5086 5098
28. J. Lukes, M. Jirku, D. Dolezel, I. Kral'ova, L. Hollar, and D.A. Maslov Analysis of ribosomal RNA genes suggests that trypanosomes are monophyletic J. Mol. Evol. 44 1997 521 527
29. M.J. Mackerras The haematozoa of Australian mammals Aust. J. Zool. 7 1959 105 135
30. D.A. Maslov, J. Lukes, M. Jirku, and L. Simpson Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa Mol. Biochem. Parasitol. 75 1996 197 205
31. D.A. Maslov, and L. Simpson Evolution of parasitism in kinetoplastid protozoa Parasitol. Today 11 1995 30 32
32. P.A. Michels, A. Poliszczak, K.A. Osinga, O. Misset, J. Van Beeumen, R.K. Wierenga, P. Borst, and F.R. Opperdoes Two tandemly linked identical genes code for the glycosomal glyceraldehyde-phosphate dehydrogenase in Trypanosoma brucei Eur. Mol. Biol. Org. J. 5 1986 1049 1056
33. M.A. Miles Transmission cycles and the hetrogeneity of Trypanosoma cruzi W.H.R. Lumsden D.A. Evans Biology of the Kinetoplastida vol. 2 1979 Academic Press London 117 196
34. P.J. Myler Molecular variation in trypanosomes Acta Trop. 53 1993 205 225
35. H. Philippe Opinion: long branch attraction and protist phylogeny Protist 151 2000 307 316
36. Q. Qian, and P.J. Keeling Diplonemid glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and prokaryote-to-eukaryote lateral gene transfer Protist 152 2001 193 201
37. H.A. Schmidt, K. Strimmer, M. Vingron, and A. von Haeseler TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing Bioinformatics 18 2002 502 504
38. H. Shimodaira, and M. Hasegawa Multiple comparisons of log-likelihoods with applications to phylogenetic inference Mol. Biol. Evol. 16 1999 1114 1116
39. A.G.B. Simpson The identity and composition of the Euglenozoa Arch. Protistenkd. 148 1997 318 328
40. A.G.B. Simpson, J. Lukes, and A.J. Roger The evolutionary history of kinetoplastids and their kinetoplasts Mol. Biol. Evol. 19 2002 2071 2083
41. M.A. Sleigh Protozoa and other Protists 1989 Edward Arnold London pp. 121-125
42. J. Stevens, and W. Gibson The molecular evolution of trypanosomes Parasitol. Today 15 1999 432 437
43. J. Stevens, H. Noyes, and W. Gibson The evolution of trypanosomes infecting humans and primates Mem. I. Oswaldo Cruz 93 1998 669 676
44. J. Stevens, H.A. Noyes, G.A. Dover, and W.C. Gibson The ancient and divergent origins of the human pathogenic trypanosomes, Trypanosoma brucei and T. cruzi Parasitology 118 1999 107 116
45. J. Stevens, H.A. Noyes, C.J. Schofield, and T.J. Gibson The molecular evolution of Trypanosomatidae Adv. Parasitol. 48 2001 1 54
46. J. Stevens, and A. Rambaut Evolutionary rate differences in trypanosomes Infect. Genet. Evol. 1 2001 143 150
47. D.L. Swofford, P.J. Olsen, P.J. Waddell, and D.M. Hillis Phylogenetic inference D.M. Hillis C. Moritz B.K. Mable Molecular Systematics 1996 Sinauer Associates, Inc. Massachusetts 407 514
48. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
49. K. Vickerman The evolutionary expansion of the trypanosomatid flagellates Int. J. Parasitol. 24 1994 1317 1331
50. F.G. Wallace The trypanosomatid parasites of insects and arachnids Exp. Parasitol. 18 1966 124 193
51. E.A. Wiemer, V. Hannaert, I.P.R. van den, J. Van Roy, F.R. Opperdoes, and P.A. Michels Molecular analysis of glyceraldehyde-3-phosphate dehydrogenase in Trypanoplasma borelli: an evolutionary scenario of subcellular compartmentation in kinetoplastida J. Mol. Evol. 40 1995 443 454
52. P.T.K. Woo Origin of mammalian trypanosomes which develop in the anterior station of blood-sucking arthropods Nature 228 1970 1059 1062
53. A.D. Wright, S. Li, S. Feng, D.S. Martin, and D.H. Lynn Phylogenetic position of the kinetoplastids, Cryptobia bullocki, Cryptobia catostomi, and Cryptobia salmositica and monophyly of the genus Trypanosoma inferred from small subunit ribosomal RNA sequences Mol. Biochem. Parasitol. 99 1999 69 76