Comparison and evolutionary analysis of the glycosomal glyceraldehyde- 3-phosphate dehydrogenase from different kinetoplastida

Journal of Molecular Evolution

Volumn 47, Issue 6, 1998, Pages 728-738

  Hannaert, Véronique ^b   Opperdoes, Fred R ^a   Michels, Paul A M ^a  

^a DE DUVE INSTITUTE   (Belgium)

^b NONE

Author keywords

Codon usage; Crithidia fasciculata; Glyceraldehyde 3 phosphate dehydrogenase; Glycosome; Herpetomonas samuelpessoai; Kinetoplastida; Leishmania; Leptomonas seymouri; Phylogeny; Trypanosoma

Indexed keywords

DNA; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE;

AMINO ACID SEQUENCE; ARTICLE; CODON; CRITHIDIA FASCICULATA; FLAGELLATE; GLYCOLYSIS; LEISHMANIA; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; TRYPANOSOMA;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMALS; BASE COMPOSITION; BASE SEQUENCE; CODON; DNA PRIMERS; DNA, PROTOZOAN; EVOLUTION, MOLECULAR; GENES, PROTOZOAN; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASES; KINETOPLASTIDA; MICROBODIES; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY;

BODONIDAE; CRITHIDIA FASCICULATA; HERPETOMONAS PESSOAI; KINETOPLASTIDA; LEISHMANIA MAJOR; LEPTOMONAS SEYMOURI; MASTIGOPHORA (FLAGELLATES); PHYTOMONAS; TRYPANOPLASMA BORRELI; TRYPANOSOMA; TRYPANOSOMA BRUCEI GAMBIENSE; TRYPANOSOMA CONGOLENSE; TRYPANOSOMA VIVAX; TRYPANOSOMATIDAE;

EID: 0032429319     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006432     Document Type: Article

References (54)

1. Alonso G, Guevara P, Ramirez J (1992) Trypanosomatidae codon usage and GC distribution. Mem Inst Oswaldo Cruz Rio de Janeiro 87:517-523
2. Alvarez F, Robello C, Vignali M (1994) Evolution of codon usage and base contents in Kinetoplastid protozoans. Mol Biol Evol 11:790-802
3. Alvarez F, Cortinas MN, Musto H (1996) The analysis of protein coding genes suggests monophyly of Trypanosoma. Mol Phylogenet Evol 5:333-343
4. Bennetzen JL, Hall BD (1982) Codon selection in yeast. J Biol Chem 257:3026-3031
5. Berchtold M, Philippe H, Breunig A, Brugerolle G, Koenig H (1994) The phylogenetic position of Dimastigella trypaniformis within the parasitic kinetoplastids. Parasitol Res 80:672-679
6. +-binding domain and of the catalytic domain of D-glyceraldehyde-3-phosphate dehydrogenase. Eur J Biochem 150:61-66
7. Brun R, Schönenberger M (1979) Cultivation and in vitro cloning of procyclic culture forms of Trypanosoma brucei in a semi-defined medium. Acta Trop 36:289-292
8. Cosgrove WB (1963) Carbohydrate utilization by trypanosomatids from insects. Exp Parasitol 13:173-177
9. Dayhoff MO, Schwanz RM, Orcutt BC (1978) A model of evolutionary change in proteins. In: Dayhoff MO (ed) Atlas of protein sequence structure. Vol 5, Suppl 3. National Biomedical Research Foundation, Washington DC, pp 345-352
10. Dollet M, Cambrony D, Gargani D (1982) Culture axénique in vitro de Phytomonas sp. (Trypanosomatidae) d'Euphorbe, transmis par Stenocephalus agalis scop. (Coreide). CR Acad Sci 295:547-550
11. Du Y, Maslov DA, Chang K-P (1994) Monophyletic origin of β-division proteobacterial endosymbionts and their coevolution with insect trypanosomatid protozoa Blastocrithidia culicis and Crithidia spp. Proc Acad Natl Sci USA 91:8437-8441
12. Evans DA, Brown RC (1972) The utilization of glucose and proline by culture forms of Trypanosoma brucei. J Protozool 19:686-690
13. Felsenstein J (1993) PHYLIP (phylogeny inference package). Version 3.5c. Department of Genetics, University of Washington. Seattle
14. Fernandes AP, Nelson K, Beverley SM (1993) Evolution of nuclear ribosomal RNAs in kinetoplastid protozoa: perspectives on the age and origins of parasitism. Proc Natl Acad Sci USA 90:11608-11612
15. Fothergill-Gilmore LA, Michels PAM (1993) Evolution of glycolysis. Prog Biophys Mol Biol 59:105-235
16. Gomez E, Valdes AM, Pinero D, Hernandez R (1991) What is a genus in the Trypanosomatidae family? Phylogenetic analysis of two small rRNA sequences. Mol Evol Biol 8:254-259
17. Hannaert V (1995) La glycéraldéhyde-3-phosphate déshydrogénase: une enzyme-clé chez les Kinetoplastida. Thèse de doctorat. Université Catholique de Louvain, Belgium
18. Hannaert V, Michels PAM (1994) Structure, function and biogenesis of glycosomes in Kinetoplastida. J Bioenerg Biomembr 26:205-212
19. Hannaert V, Blaauw M, Kohl L, Allert S, Opperdoes FR, Michels PAM (1992) Molecular analysis of the cytosolic and glycosomal glyceraldehyde-3-phosphate dehydrogenase in Leishmania mexicana. Mol Biochem Parasitol 55:115-126
20. Hannaert V, Callens M, Opperdoes FR, Michels PAM (1994) Purification and characterization of the native and the recombinant Leishmania mexicana glycosomal glyceraldehyde-3-phosphate dehydrogenase. Eur J Biochem 225:143-149
21. Harris JJ, Waters M (1976) Glyceraldehyde-3-phosphate dehydrogenase. In: Boyer PD (ed) The enzymes. Academic Press, New York, Vol 13, pp 1-49
22. Hashimoto T, Nakamura Y, Kamaishi T, Adachi J, Nakamura F, Okamoto K, Hasegawa M (1995) Phylogenetic place of kinetoplastid protozoa inferred from a protein phylogeny of elongation factor Ia. Mol Biochem Parasitol 70:181-185
23. Henze K, Badr A, Wettern M, Cerff R, Martin W (1995) A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution. Proc Natl Acad Sci USA 92: 9122-9126
24. Hernandes R, Rios P, Valdes AM, Pinero D (1990) Primary structure of Trypanosoma cruzi small-subunit ribosomal RNA coding region: comparison with other trypanosomatids. Mol Biochem Parasitol 41:207-212
25. Kendall G, Wilderspin AF, Ashall F, Miles MA, Kelly JM (1990) Trypanosoma cruzi glycosomal glyceraldehyde-3-phosphate dehydrogenase does not conform to the "hotspot" topogenic signal model. EMBO J 9:2751-2758
26. Kim H, Feil IK, Verlinde CL, Petra PH, Hol WG (1995) Crystal structure of glycosomal glyceraldehyde-3-phosphate dehydrogenase from Leishmania mexicana: implications for structure-based drug design and a new position for the inorganic phosphate binding site. Biochemistry 34:14975-14983
27. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
28. Lambeir A-M, Loiseau AM, Kuntz DA, Vellieux FM, Michels PAM, Opperdoes FR (1991) The cytosolic and glycosomal glyceraldehyde-3-phosphate dehydrogenase from Trypanosoma brucei. Kinetic properties and comparison with homologous enzymes. Eur J Biochem 198:429-435
29. Landweber LF, Gilbert W (1994) Phylogenetic analysis of RNA editing: a primitive genetic phenomenon. Proc Natl Acad Sci USA 91:918-921
30. Lukes J, Arts GJ, Van den Burg J, De Haan A, Opperdoes F, Sloof P, Benne R (1994) Novel pattern of editing regions in mitochondrial transcripts of the cryptobiid Trypanoplasma borreli. EMBO J 13: 5086-5098
31. Lukes J, Jirku M, Dolezel D, Kral'ova I, Hollar L, Maslov DA (1997) Analysis of ribosomal RNA genes suggests that trypanosomes are monophyletic. J Mol Evol 44:521-527
32. Marchand M, Kooystra U, Wierenga RK, Lambeir AM, Van Beeumen J, Opperdoes FR, Michels PAM (1989) Glucosephosphate isomerase from Trypanosoma brucei. Cloning and characterization of the gene and analysis of the enzyme. Eur J Biochem 184:455-464
33. Marche S, Roth C, Philippe H, Dollet M, Baitz T (1995) Characterization and detection of plant trypanosomatids by sequence analysis of the small subunit ribosomal RNA gene. Mol Biochem Parasitol 71:15-26
34. Maslov DA, Avila HA, Lake JA, Simpson L (1994) Evolution of RNA editing in kinetoplastid protozoa. Nature 365:345-348
35. Maslov DA, Lukes J, Jirku M, Simpson L (1996) Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa. Mol Biochem Parasitol 75:197-205
36. Mercer WD, Winn SI, Watson HC (1976) Twinning in crystals of human skeletal muscle D-glyceraldehyde-3-phosphate dehydrogenase. J Mol Biol 104:277-283
37. Michels PAM (1986) Evolutionary aspects of trypanosomes: analysis of genes. J Mol Evol 24:45-52
38. Michels PAM, Poliszczak A, Osinga KA, Misset O, Van Beeumen J, Wierenga RK, Borst P, Opperdoes FR (1986) Two tandemly linked identical genes code for the glycosomal glyceraldehyde-phosphate dehydrogenase in Trypanosoma brucei. EMBO J 5:1049-1056
39. Michels PAM, Marchand M, Kohl L, Allert S, Wierenga RK, Opperdoes FR (1991) The cytosolic and glycosomal isoenzymes of glyceraldehyde-3-phosphate dehydrogenase in Trypcinosoma brucei have a distant evolutionary relationship. Eur J Biochem 198:421-428
40. Michels PAM, Hannaert V, Bakker BM (1997) Glycolysis of Kinetoplastida. In: Hide G, Mottram JC, Coombs GH, Holmes PH (eds) Trypanosomiasis and leishmaniasis. CAB International, Oxford, pp 133-148
41. Misset O, Bos OJM, Opperdoes FR (1986) Glycolytic enzymes of Trypanosoma brucei: simultaneous purification, intraglycosomal concentrations and physical properties. Eur J Biochem 157:441-453
42. Opperdoes FR, Borst P (1977) Localization of nine glycolytic enzymes in a microbody-like organelle in Trypanosoma brucei: the glycosome. FEBS Lett 143:360-364
43. Parsons M, Stuart K, Smiley BL (1991) Trypanosoma brucei: analysis of codon usage and nucleotide composition of nuclear genes. Exp Parasitol 73:101-105
44. Sanchez-Moreno M, Lasztity D, Coppens I, Opperdoes FR (1992) Characterization of carbohydrate metabolism and demonstration of glycosomes in a Phytomonas sp. isolated from Euphorbia characias. Mol Biochem Parasitol 54:185-200
45. Sogin M, Gunderson J, Elwood H, Alonso R, Peattie D (1989) Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia. Science 243:75-77
46. Strimmer K, von Haeseler A (1996) Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
47. Swinkels BW, Loiseau A, Opperdoes FR, Borst P (1992) A phosphoglycerate kinase-related gene conserved between Trypanosoma brucei and Crithidia fasciculata. Mol Biochem Parasitol 50:69-78
48. Van der Ploeg LHT, Bernards A, Rijsewijk FAM, Borst P (1982) Characterization of the DNA duplication-transposition that controls the expression of two genes for variant surface glycoproteins in Trypanosoma brucei. Nucleic Acids Res 10:593-609
49. Vellieux FMD, Hajdu J, Verlinde CLMJ, Groendijk H, Read RJ, Greenhough TJ, Campbell JW, Kalk KH, Littlechild JA, Watson HC, Hol WGJ (1993) Structure of glycosomal glyceraldehyde-3-phosphate dehydrogenase from Trypanosoma brucei determined from Laue data. Proc Natl Acad Sci USA 90:2355-2359
50. Verlinde CLMJ, Callens M, Van Calenbergh S, Van Aerschot A, Herdewijn P, Hannaert V, Michels PAM, Opperdoes FR, Hol W (1994) Selective inhibition of trypanosomal glyceraldehyde-3-phosphate dehydrogenase by protein structure based design: toward new drug for the treatment of sleeping sickness. J Med Chem 37:3605-3613
51. Vickerman K (1976) The diversity of the kinetoplastid flagellates. In: Lumsden WHR, Evans DA (eds) Biology of the Kinetoplastida. Academic Press, London, pp 11-34
52. Vickerman K (1994) The evolutionary expansion of the trypanosomatid flagellates, Int J Parasitol 24:1317-1331
53. Viscogliosi E, Müller M (1998) Phylogenetic relationships of the glycolytic enzyme, glyceraldehyde-3-phosphate dehydrogenase, from parabasalid flagellates. J Mol Evol (in press)
54. Wiemer EAC, Hannaert V, van den Ussel P, Van Roy J, Opperdoes FR, Michels PAM (1995) Molecular analysis of glyceraldehyde-3-phosphate dehydrogenase in Trypanoplasma borelli: an evolutionary scenario of subcellular compartmentation in Kinetoplastida. J Mol Evol 40:443-454