-
1
-
-
0030903283
-
Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila
-
AKASHI, H., and S. W. SCHAEFFER, 1997 Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila. Genetics 146: 295-307.
-
(1997)
Genetics
, vol.146
, pp. 295-307
-
-
Akashi, H.1
Schaeffer, S.W.2
-
2
-
-
27144491328
-
Adaptive evolution of non-coding DNA in Drosophila
-
ANDOLFATTO, P., 2005 Adaptive evolution of non-coding DNA in Drosophila. Nature 437: 1149-1152.
-
(2005)
Nature
, vol.437
, pp. 1149-1152
-
-
Andolfatto, P.1
-
3
-
-
13944275268
-
Patterns of selection on synonymous and nonsynonymous variants in Drosophila miranda
-
BARTOLOMÉ, C., X. MASIDE, S. YI, A. L. GRANT and B. CHARLESWORTH, 2005 Patterns of selection on synonymous and nonsynonymous variants in Drosophila miranda. Genetics 169: 1495-1507.
-
(2005)
Genetics
, vol.169
, pp. 1495-1507
-
-
Bartolomé, C.1
Maside, X.2
Yi, S.3
Grant, A.L.4
Charlesworth, B.5
-
4
-
-
0031673084
-
The effect of hitch-hiking on neutral genealogies
-
BARTON, N. H., 1998 The effect of hitch-hiking on neutral genealogies. Genet. Res. 72: 123-133.
-
(1998)
Genet. Res.
, vol.72
, pp. 123-133
-
-
Barton, N.H.1
-
5
-
-
0345730813
-
Effect of misoriented sites on neutrality tests with outgroup
-
BAUDRY, E., and F. DEPAULIS, 2003 Effect of misoriented sites on neutrality tests with outgroup. Genetics 165: 1619-1622.
-
(2003)
Genetics
, vol.165
, pp. 1619-1622
-
-
Baudry, E.1
Depaulis, F.2
-
6
-
-
44949129000
-
Assessing the evolutionary impact of amino acid mutations in the human genome
-
BOYKO, A. R., S. H. WILLIAMSON, A. R. INDAP, J. D. DEGENHARDT, R. D. HERNANDEZ et al., 2008 Assessing the evolutionary impact of amino acid mutations in the human genome. PLoS Genet. 4: e1000083.
-
(2008)
PLoS Genet.
, vol.4
-
-
Boyko, A.R.1
Williamson, S.H.2
Indap, A.R.3
Degenhardt, J.D.4
Hernandez, R.D.5
-
7
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
BULMER, M., 1991 The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
8
-
-
0035691964
-
Directional selection and the site-frequency spectrum
-
BUSTAMANTE, C. D., J. WAKELEY, S. SAWYER and D. L. HARTL, 2001 Directional selection and the site-frequency spectrum. Genetics 159: 1779-1788.
-
(2001)
Genetics
, vol.159
, pp. 1779-1788
-
-
Bustamante, C.D.1
Wakeley, J.2
Sawyer, S.3
Hartl, D.L.4
-
9
-
-
0037041421
-
The cost of inbreeding in Arabidopsis
-
BUSTAMANTE, C. D., R. NIELSEN, S. A. SAWYER, K. M. OLSEN, M. D. PURUGGANAN et al., 2002 The cost of inbreeding in Arabidopsis. Nature 416: 531-534.
-
(2002)
Nature
, vol.416
, pp. 531-534
-
-
Bustamante, C.D.1
Nielsen, R.2
Sawyer, S.A.3
Olsen, K.M.4
Purugganan, M.D.5
-
10
-
-
0030668902
-
Rapid fixation of deleterious alleles can be caused by Muller's ratchet
-
CHARLESWORTH, B., and D. CHARLESWORTH, 1997 Rapid fixation of deleterious alleles can be caused by Muller's ratchet. Genet. Res. 70: 63-73.
-
(1997)
Genet. Res.
, vol.70
, pp. 63-73
-
-
Charlesworth, B.1
Charlesworth, D.2
-
12
-
-
0027305597
-
The effect of deleterious mutations on neutral molecular variation
-
CHARLESWORTH, B., M. T. MORGAN and D. CHARLESWORTH, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303. (Pubitemid 23220050)
-
(1993)
Genetics
, vol.134
, Issue.4
, pp. 1289-1303
-
-
Charlesworth, B.1
Morgan, M.T.2
Charlesworth, D.3
-
13
-
-
77957744647
-
Genetic recombination and molecular evolution
-
CHARLESWORTH, B., A. J. BETANCOURT, V. B. KAISER and I. GORDO, 2010 Genetic recombination and molecular evolution. Cold Spring Harbor Symp. Quant. Biol. 74: 177-186.
-
(2010)
Cold Spring Harbor Symp. Quant. Biol.
, vol.74
, pp. 177-186
-
-
Charlesworth, B.1
Betancourt, A.J.2
Kaiser, V.B.3
Gordo, I.4
-
14
-
-
0028863202
-
The pattern of neutralmolecular variation under the background selection model
-
CHARLESWORTH, D., B. CHARLESWORTH and M. T. MORGAN, 1995 The pattern of neutralmolecular variation under the background selection model. Genetics 141: 1619-1632.
-
(1995)
Genetics
, vol.141
, pp. 1619-1632
-
-
Charlesworth, D.1
Charlesworth, B.2
Morgan, M.T.3
-
15
-
-
27844577664
-
Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila
-
COMERON, J. M., and T. B. GUTHRIE, 2005 Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila. Mol. Biol. Evol. 22: 2519-2530.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 2519-2530
-
-
Comeron, J.M.1
Guthrie, T.B.2
-
16
-
-
0036263105
-
Population, evolutionary and genomic consequences of interference selection
-
COMERON, J. M., and M. KREITMAN, 2002 Population, evolutionary and genomic consequences of interference selection. Genetics 161: 389-410.
-
(2002)
Genetics
, vol.161
, pp. 389-410
-
-
Comeron, J.M.1
Kreitman, M.2
-
17
-
-
37349011445
-
The Hill-Robertson effect: Evolutionary consequences of weak selection and linkage in finite populations
-
COMERON, J. M., A. WILLIFORD and R. M. KLIMAN, 2008 The Hill-Robertson effect: evolutionary consequences of weak selection and linkage in finite populations. Heredity 100: 19-31.
-
(2008)
Heredity
, vol.100
, pp. 19-31
-
-
Comeron, J.M.1
Williford, A.2
Kliman, R.M.3
-
18
-
-
44649163679
-
Multilocus patterns of polymorphism and selection across the X chromosome of Caenorhabditis remanei
-
CUTTER, A. D., 2008 Multilocus patterns of polymorphism and selection across the X chromosome of Caenorhabditis remanei. Genetics 178: 1661-1672.
-
(2008)
Genetics
, vol.178
, pp. 1661-1672
-
-
Cutter, A.D.1
-
19
-
-
33750021975
-
Selection intensity on preferred codons correlates with overall codon usage bias in Caenorhabditis remanei
-
CUTTER, A. D., and B. CHARLESWORTH, 2006 Selection intensity on preferred codons correlates with overall codon usage bias in Caenorhabditis remanei. Curr. Biol. 16: 2053-2057.
-
(2006)
Curr. Biol.
, vol.16
, pp. 2053-2057
-
-
Cutter, A.D.1
Charlesworth, B.2
-
20
-
-
34250717529
-
Stepping-stone spatial structure causes slow decay of linkage disequilibrium and shifts the site frequency spectrum
-
DE, A., and R. DURRETT, 2007 Stepping-stone spatial structure causes slow decay of linkage disequilibrium and shifts the site frequency spectrum. Genetics 176: 969-981.
-
(2007)
Genetics
, vol.176
, pp. 969-981
-
-
Durrett, R.1
-
21
-
-
61349120804
-
The polymorphism frequency spectrum of finitely many sites under selection
-
DESAI, M. M., and J. B. PLOTKIN, 2008 The polymorphism frequency spectrum of finitely many sites under selection. Genetics 180: 2175-2191.
-
(2008)
Genetics
, vol.180
, pp. 2175-2191
-
-
Desai, M.M.1
Plotkin, J.B.2
-
23
-
-
33745347447
-
The distribution of fitness effects of new deleterious amino acid mutations in humans
-
EYRE-WALKER, A., M. WOOLFIT and T. PHELPS, 2006 The distribution of fitness effects of new deleterious amino acid mutations in humans. Genetics 173: 891-900.
-
(2006)
Genetics
, vol.173
, pp. 891-900
-
-
Eyre-Walker, A.1
Woolfit, M.2
Phelps, T.3
-
24
-
-
0016110957
-
The evolutionary advantage of recombination
-
FELSENSTEIN, J., 1974 The evolutionary advantage of recombination. Genetics 78: 737-756.
-
(1974)
Genetics
, vol.78
, pp. 737-756
-
-
Felsenstein, J.1
-
25
-
-
0029980416
-
New statistical tests of neutrality for DNA samples from a population
-
FU, Y. X., 1996 New statistical tests of neutrality for DNA samples from a population. Genetics 143: 557-570.
-
(1996)
Genetics
, vol.143
, pp. 557-570
-
-
Fu, Y.X.1
-
26
-
-
0030821992
-
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
-
FU, Y. X., 1997 Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
-
(1997)
Genetics
, vol.147
, pp. 915-925
-
-
Fu, Y.X.1
-
27
-
-
33644780844
-
GC-biased segregation of noncoding polymorphisms in Drosophila
-
GALTIER, N., E. BAZIN and N. BIERNE, 2006 GC-biased segregation of noncoding polymorphisms in Drosophila. Genetics 172: 221-228.
-
(2006)
Genetics
, vol.172
, pp. 221-228
-
-
Galtier, N.1
Bazin, E.2
Bierne, N.3
-
29
-
-
0035989428
-
Muller's ratchet and the pattern of variation at a neutral locus
-
GORDO, I., A. NAVARRO and B. CHARLESWORTH, 2002 Muller's ratchet and the pattern of variation at a neutral locus. Genetics 161: 835-848.
-
(2002)
Genetics
, vol.161
, pp. 835-848
-
-
Gordo, I.1
Navarro, A.2
Charlesworth, B.3
-
30
-
-
0030498194
-
Ancestral inference from samples of DNA sequences with recombination
-
GRIFFITHS, R. C., and P. MARJORAM, 1996 Ancestral inference from samples of DNA sequences with recombination. J. Comput. Biol. 3: 479-502.
-
(1996)
J. Comput. Biol.
, vol.3
, pp. 479-502
-
-
Griffiths, R.C.1
Marjoram, P.2
-
31
-
-
73449149044
-
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
-
GUTENKUNST, R. N., R. D. HERNANDEZ, S. H. WILLIAMSON and C. D. BUSTAMANTE, 2009 Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet. 5: e1000695.
-
(2009)
PLoS Genet.
, vol.5
-
-
Gutenkunst, R.N.1
Hernandez, R.D.2
Williamson, S.H.3
Bustamante, C.D.4
-
32
-
-
46949087998
-
Non-neutral processes drive the nucleotide composition of non-coding sequences in Drosophila
-
HADDRILL, P. R., and B. CHARLESWORTH, 2008 Non-neutral processes drive the nucleotide composition of non-coding sequences in Drosophila. Biol. Lett. 4: 438-441.
-
(2008)
Biol. Lett.
, vol.4
, pp. 438-441
-
-
Haddrill, P.R.1
Charlesworth, B.2
-
33
-
-
25844481290
-
Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
-
HADDRILL, P. R., B. CHARLESWORTH, D. L. HALLIGAN and P. ANDOLFATTO, 2005 Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol. 6: R67.
-
(2005)
Genome Biol.
, vol.6
-
-
Haddrill, P.R.1
Charlesworth, B.2
Halligan, D.L.3
Andolfatto, P.4
-
34
-
-
34547808850
-
Context dependence, ancestral misidentification, and spurious signatures of natural selection
-
HERNANDEZ, R. D., S. H. WILLIAMSON and C. D. BUSTAMANTE, 2007 Context dependence, ancestral misidentification, and spurious signatures of natural selection. Mol. Biol. Evol. 24: 1792-1800.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1792-1800
-
-
Hernandez, R.D.1
Williamson, S.H.2
Bustamante, C.D.3
-
35
-
-
0036188913
-
Interactions between natural selection, recombination and gene density in the genes of Drosophila
-
HEY, J., and R. M. KLIMAN, 2002 Interactions between natural selection, recombination and gene density in the genes of Drosophila. Genetics 160: 595-608.
-
(2002)
Genetics
, vol.160
, pp. 595-608
-
-
Hey, J.1
Kliman, R.M.2
-
36
-
-
0013979181
-
The effect of linkage on limits to artificial selection
-
HILL, W. G., and A. ROBERTSON, 1966 The effect of linkage on limits to artificial selection. Genet. Res. 8: 269-294.
-
(1966)
Genet. Res.
, vol.8
, pp. 269-294
-
-
Hill, W.G.1
Robertson, A.2
-
37
-
-
0028146106
-
Meiotic gene conversion tract length distribution within the rosy locus of Drosophila melanogaster
-
HILLIKER, A. J., G. HARAUZ, A. G. REAUME, M. GRAY, S. H. CLARK et al., 1994 Meiotic gene conversion tract length distribution within the rosy locus of Drosophila melanogaster. Genetics 137: 1019-1026.
-
(1994)
Genetics
, vol.137
, pp. 1019-1026
-
-
Hilliker, A.J.1
Harauz, G.2
Reaume, A.G.3
Gray, M.4
Clark, S.H.5
-
38
-
-
0020744702
-
Properties of a neutral allele model with intragenic recombination
-
HUDSON, R. R., 1983 Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23: 183-201.
-
(1983)
Theor. Popul. Biol.
, vol.23
, pp. 183-201
-
-
Hudson, R.R.1
-
39
-
-
0001935493
-
Gene genealogies and the coalescent process
-
edited by D. Futuyma and J. Antonovics. Oxford University Press, Oxford
-
HUDSON, R. R., 1990 Gene genealogies and the coalescent process, pp. 1-44 in Oxford Surveys in Evolutionary Biology, Vol. 7, edited by D. Futuyma and J. Antonovics. Oxford University Press, Oxford.
-
(1990)
Oxford Surveys in Evolutionary Biology
, vol.7
, pp. 1-44
-
-
Hudson, R.R.1
-
40
-
-
0002728140
-
Gene trees with background selection
-
edited by B. Golding. Chapman & Hall, London
-
HUDSON, R. R., and N. L. KAPLAN, 1994 Gene trees with background selection, pp. 140-153 in Non-Neutral Evolution: Theories and Molecular Data, edited by B. Golding. Chapman & Hall, London.
-
(1994)
Non-Neutral Evolution: Theories and Molecular Data
, pp. 140-153
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
41
-
-
23344438911
-
Distinguishing between selective sweeps and demography using DNA polymorphism data
-
JENSEN, J. D., Y. KIM, V. B. DUMONT, C. F. AQUADRO and C. D. BUSTAMANTE, 2005 Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics 170: 1401-1410.
-
(2005)
Genetics
, vol.170
, pp. 1401-1410
-
-
Jensen, J.D.1
Kim, Y.2
DuMont, V.B.3
Aquadro, C.F.4
Bustamante, C.D.5
-
42
-
-
58149496323
-
The effects of deleterious mutations on evolution in non-recombining genomes
-
KAISER, V. B., and B. CHARLESWORTH, 2009 The effects of deleterious mutations on evolution in non-recombining genomes. Trends Genet. 25: 9-12.
-
(2009)
Trends Genet.
, vol.25
, pp. 9-12
-
-
Kaiser, V.B.1
Charlesworth, B.2
-
43
-
-
37249042614
-
Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies
-
KEIGHTLEY, P. D., and A. EYRE-WALKER, 2007 Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies. Genetics 177: 2251-2261.
-
(2007)
Genetics
, vol.177
, pp. 2251-2261
-
-
Keightley, P.D.1
Eyre-Walker, A.2
-
44
-
-
67650064592
-
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
-
KEIGHTLEY, P. D., U. TRIVEDI, M. THOMSON, F. OLIVER, S. KUMAR et al., 2009 Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res. 19: 1195-1201.
-
(2009)
Genome Res.
, vol.19
, pp. 1195-1201
-
-
Keightley, P.D.1
Trivedi, U.2
Thomson, M.3
Oliver, F.4
Kumar, S.5
-
45
-
-
0015071350
-
Theoretical foundation of population genetics at the molecular level
-
KIMURA, M., 1971 Theoretical foundation of population genetics at the molecular level. Theor. Popul. Biol. 2: 174-208.
-
(1971)
Theor. Popul. Biol.
, vol.2
, pp. 174-208
-
-
Kimura, M.1
-
47
-
-
0029130141
-
Contamination of the genome by very slightly deleterious mutations: Why have we not died 100 times over?
-
KONDRASHOV, A. S., 1995 Contamination of the genome by very slightly deleterious mutations: Why have we not died 100 times over? J. Theor. Biol. 175: 583-594.
-
(1995)
J. Theor. Biol.
, vol.175
, pp. 583-594
-
-
Kondrashov, A.S.1
-
48
-
-
0020560127
-
Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster
-
KREITMAN, M., 1983 Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304: 412-417.
-
(1983)
Nature
, vol.304
, pp. 412-417
-
-
Kreitman, M.1
-
49
-
-
0023064998
-
Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons
-
LI, W. H., 1987 Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons. J. Mol. Evol. 24: 337-345.
-
(1987)
J. Mol. Evol.
, vol.24
, pp. 337-345
-
-
Li, W.H.1
-
50
-
-
0003421005
-
-
Sinauer Associates, Sunderland, MA
-
LI, W. H., 1997 Molecular Evolution. Sinauer Associates, Sunderland, MA.
-
(1997)
Molecular Evolution
-
-
Li, W.H.1
-
51
-
-
33748649262
-
Inferring the distribution of mutational effects on fitness in Drosophila
-
LOEWE, L., and B. CHARLESWORTH, 2006 Inferring the distribution of mutational effects on fitness in Drosophila. Biol. Lett. 2: 426-430.
-
(2006)
Biol. Lett.
, vol.2
, pp. 426-430
-
-
Loewe, L.1
Charlesworth, B.2
-
52
-
-
34249068192
-
Background selection in single genes may explain patterns of codon bias
-
LOEWE, L., and B. CHARLESWORTH, 2007 Background selection in single genes may explain patterns of codon bias. Genetics 175: 1381-1393.
-
(2007)
Genetics
, vol.175
, pp. 1381-1393
-
-
Loewe, L.1
Charlesworth, B.2
-
53
-
-
33644764039
-
Estimating selection on nonsynonymous mutations
-
LOEWE, L., B. CHARLESWORTH, C. BARTOLOME and V. NOEL, 2006 Estimating selection on nonsynonymous mutations. Genetics 172: 1079-1092.
-
(2006)
Genetics
, vol.172
, pp. 1079-1092
-
-
Loewe, L.1
Charlesworth, B.2
Bartolome, C.3
Noel, V.4
-
54
-
-
1142302213
-
Selection on codon usage in Drosophila americana
-
MASIDE, X., A. W. LEE and B. CHARLESWORTH, 2004 Selection on codon usage in Drosophila americana. Curr. Biol. 14: 150-154.
-
(2004)
Curr. Biol.
, vol.14
, pp. 150-154
-
-
Maside, X.1
Lee, A.W.2
Charlesworth, B.3
-
55
-
-
0036811711
-
A genealogical interpretation of linkage disequilibrium
-
MCVEAN, G. A., 2002 A genealogical interpretation of linkage disequilibrium. Genetics 162: 987-991.
-
(2002)
Genetics
, vol.162
, pp. 987-991
-
-
McVean, G.A.1
-
56
-
-
0032749124
-
A population genetic model for the evolution of synonymous codon usage: Patterns and predictions
-
MCVEAN, G. A. T., and B. CHARLESWORTH, 1999 A population genetic model for the evolution of synonymous codon usage: patterns and predictions. Genet. Res. 74: 145-158.
-
(1999)
Genet. Res.
, vol.74
, pp. 145-158
-
-
McVean, G.A.T.1
Charlesworth, B.2
-
57
-
-
0034099647
-
The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation
-
MCVEAN, G. A., and B. CHARLESWORTH, 2000 The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation. Genetics 155: 929-944.
-
(2000)
Genetics
, vol.155
, pp. 929-944
-
-
McVean, G.A.1
Charlesworth, B.2
-
58
-
-
0031014102
-
The genealogy of samples in models with selection
-
NEUHAUSER, C., and S. M. KRONE, 1997 The genealogy of samples in models with selection. Genetics 145: 519-534.
-
(1997)
Genetics
, vol.145
, pp. 519-534
-
-
Neuhauser, C.1
Krone, S.M.2
-
59
-
-
29444452921
-
Molecular signatures of natural selection
-
NIELSEN, R., 2005 Molecular signatures of natural selection. Annu. Rev. Genet. 39: 197-218.
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
61
-
-
0036257313
-
Selection on a modifier of recombination rate due to linked deleterious mutations
-
PALSSON, S., 2002 Selection on a modifier of recombination rate due to linked deleterious mutations. J. Hered. 93: 22-26.
-
(2002)
J. Hered.
, vol.93
, pp. 22-26
-
-
Palsson, S.1
-
62
-
-
0029861446
-
Optimal sequencing strategies for surveying molecular genetic diversity
-
PLUZHNIKOV, A., and P. DONNELLY, 1996 Optimal sequencing strategies for surveying molecular genetic diversity. Genetics 144: 1247-1262.
-
(1996)
Genetics
, vol.144
, pp. 1247-1262
-
-
Pluzhnikov, A.1
Donnelly, P.2
-
63
-
-
0004161838
-
-
Cambridge University Press, Cambridge, UK
-
PRESS, W. H., S. A. TEUKOLSKY, W. T. VETTERLING and B. P. FLANNERY, 1992 Numerical Recipes in C: The Art of Scientific Computing. Cambridge University Press, Cambridge, UK.
-
(1992)
Numerical Recipes in C: The Art of Scientific Computing
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.P.4
-
64
-
-
0026460082
-
Population genetics of polymorphism and divergence
-
SAWYER, S. A., and D. L. HARTL, 1992 Population genetics of polymorphism and divergence. Genetics 132: 1161-1176.
-
(1992)
Genetics
, vol.132
, pp. 1161-1176
-
-
Sawyer, S.A.1
Hartl, D.L.2
-
65
-
-
0347380978
-
Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection
-
SAWYER, S. A., R. J. KULATHINAL, C. D. BUSTAMANTE and D. L. HARTL, 2003 Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection. J. Mol. Evol. 57(Suppl. 1): S154-S164.
-
(2003)
J. Mol. Evol.
, vol.57
, Issue.SUPPL. 1
-
-
Sawyer, S.A.1
Kulathinal, R.J.2
Bustamante, C.D.3
Hartl, D.L.4
-
66
-
-
34249848425
-
Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila
-
SAWYER, S. A., J. PARSCH, Z. ZHANG and D. L. HARTL, 2007 Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila. Proc. Natl. Acad. Sci. USA 104: 6504-6510.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 6504-6510
-
-
Sawyer, S.A.1
Parsch, J.2
Zhang, Z.3
Hartl, D.L.4
-
67
-
-
0036999964
-
Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura
-
SCHAEFFER, S. W., 2002 Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura. Genet. Res. 80: 163-175.
-
(2002)
Genet. Res.
, vol.80
, pp. 163-175
-
-
Schaeffer, S.W.1
-
68
-
-
77749292827
-
Gene genealogies strongly distorted by weakly interfering mutations in constant environments
-
SEGER, J., W. A. SMITH, J. J. PERRY, J. HUNN, Z. A. KALISZEWSKA et al., 2010 Gene genealogies strongly distorted by weakly interfering mutations in constant environments. Genetics 184: 529-545.
-
(2010)
Genetics
, vol.184
, pp. 529-545
-
-
Seger, J.1
Smith, W.A.2
Perry, J.J.3
Hunn, J.4
Kaliszewska, Z.A.5
-
69
-
-
0029099781
-
Properties of statistical tests of neutrality for DNA polymorphism data
-
SIMONSEN, K. L., G. A. CHURCHILL and C. F. AQUADRO, 1995 Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141: 413-429.
-
(1995)
Genetics
, vol.141
, pp. 413-429
-
-
Simonsen, K.L.1
Churchill, G.A.2
Aquadro, C.F.3
-
70
-
-
0025951996
-
Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
-
SLATKIN, M., and R. R. HUDSON, 1991 Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.
-
(1991)
Genetics
, vol.129
, pp. 555-562
-
-
Slatkin, M.1
Hudson, R.R.2
-
71
-
-
0032931963
-
The effect of background selection at a single locus on weakly selected, partially linked variants
-
STEPHAN, W., B. CHARLESWORTH and G. MCVEAN, 1999 The effect of background selection at a single locus on weakly selected, partially linked variants. Genet. Res. 73: 133-146.
-
(1999)
Genet. Res.
, vol.73
, pp. 133-146
-
-
Stephan, W.1
Charlesworth, B.2
McVean, G.3
-
72
-
-
0344441428
-
Estimating recombination rates from population-genetic data
-
STUMPF, M. P., and G. A. MCVEAN, 2003 Estimating recombination rates from population-genetic data. Nat. Rev. Genet. 4: 959-968.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 959-968
-
-
Stumpf, M.P.1
McVean, G.A.2
-
73
-
-
0033939003
-
Molecular evolution in a multisite nearly neutral mutation model
-
TACHIDA, H., 2000 Molecular evolution in a multisite nearly neutral mutation model. J. Mol. Evol. 50: 69-81.
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 69-81
-
-
Tachida, H.1
-
74
-
-
0024762773
-
The effect of change in population size on DNA polymorphism
-
TAJIMA, F., 1989a The effect of change in population size on DNA polymorphism. Genetics 123: 597-601.
-
(1989)
Genetics
, vol.123
, pp. 597-601
-
-
Tajima, F.1
-
75
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
TAJIMA, F., 1989b Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
76
-
-
33644763127
-
Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
-
THORNTON, K., and P. ANDOLFATTO, 2006 Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172: 1607-1619.
-
(2006)
Genetics
, vol.172
, pp. 1607-1619
-
-
Thornton, K.1
Andolfatto, P.2
-
77
-
-
0034984837
-
Coalescent simulations and statistical tests of neutrality
-
author reply 1136-1138
-
WALL, J. D., and R. R. HUDSON, 2001 Coalescent simulations and statistical tests of neutrality. Mol. Biol. Evol. 18: 1134-1135; author reply 1136-1138.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1134-1135
-
-
Wall, J.D.1
Hudson, R.R.2
-
78
-
-
20344380699
-
Simultaneous inference of selection and population growth from patterns of variation in the human genome
-
WILLIAMSON, S. H., R. HERNANDEZ, A. FLEDEL-ALON, L. ZHU, R. NIELSEN et al., 2005 Simultaneous inference of selection and population growth from patterns of variation in the human genome. Proc. Natl. Acad. Sci. USA 102: 7882-7887.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 7882-7887
-
-
Williamson, S.H.1
Hernandez, R.2
Fledel-Alon, A.3
Zhu, L.4
Nielsen, R.5
-
79
-
-
33750543338
-
Consistency of estimators of population scaled parameters using composite likelihood
-
WIUF, C., 2006 Consistency of estimators of population scaled parameters using composite likelihood. J. Math. Biol. 53: 821-841.
-
(2006)
J. Math. Biol.
, vol.53
, pp. 821-841
-
-
Wiuf, C.1
-
80
-
-
0001771498
-
Evolution in Mendelian populations
-
WRIGHT, S., 1931 Evolution in Mendelian populations. Genetics 16: 97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
-
81
-
-
0002920493
-
Adaptation and selection
-
edited by G. Jepson, G. Simpson and E. Mayr. Princeton University Press, Princeton, NJ
-
WRIGHT, S., 1949 Adaptation and selection, pp. 365-389 in Genetics, Palaeontology, and Evolution, edited by G. Jepson, G. Simpson and E. Mayr. Princeton University Press, Princeton, NJ.
-
(1949)
Genetics, Palaeontology, and Evolution
, pp. 365-389
-
-
Wright, S.1
-
82
-
-
77952826597
-
A simple multi-allele model and its application to identifying preferred/unpreferred codons using polymorphism data
-
ZENG, K., 2010 A simple multi-allele model and its application to identifying preferred/unpreferred codons using polymorphism data. Mol. Biol. Evol. 27: 1327-1337.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1327-1337
-
-
Zeng, K.1
-
83
-
-
70649090279
-
Estimating selection intensity on synonymous codon usage in a nonequilibrium population
-
ZENG, K., and B. CHARLESWORTH, 2009 Estimating selection intensity on synonymous codon usage in a nonequilibrium population. Genetics 183: 651-662.
-
(2009)
Genetics
, vol.183
, pp. 651-662
-
-
Zeng, K.1
Charlesworth, B.2
-
84
-
-
76749119389
-
Studying patterns of recent evolution at synonymous sites and intronic sites in Drosophila melanogaster
-
ZENG, K., and B. CHARLESWORTH, 2010 Studying patterns of recent evolution at synonymous sites and intronic sites in Drosophila melanogaster. J. Mol. Evol. 70: 116-128.
-
(2010)
J. Mol. Evol.
, vol.70
, pp. 116-128
-
-
Zeng, K.1
Charlesworth, B.2
-
85
-
-
33751342650
-
Statistical tests for detecting positive selection by utilizing high-frequency variants
-
ZENG, K., Y. X. FU, S. SHI and C. I. WU, 2006 Statistical tests for detecting positive selection by utilizing high-frequency variants. Genetics 174: 1431-1439.
-
(2006)
Genetics
, vol.174
, pp. 1431-1439
-
-
Zeng, K.1
Fu, Y.X.2
Shi, S.3
Wu, C.I.4
-
86
-
-
23344453718
-
A composite-likelihood approach for detecting directional selection from DNA sequence data
-
ZHU, L., and C. D. BUSTAMANTE, 2005 A composite-likelihood approach for detecting directional selection from DNA sequence data. Genetics 170: 1411-1421.
-
(2005)
Genetics
, vol.170
, pp. 1411-1421
-
-
Zhu, L.1
Bustamante, C.D.2
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