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Volumn 53, Issue 5, 2006, Pages 821-841

Consistency of estimators of population scaled parameters using composite likelihood

Author keywords

Coalescent theory; Composite likelihood; Consistency; Estimator; Genomic data

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; GENOME; NUCLEOTIDE SEQUENCE; STATISTICAL ANALYSIS; STATISTICAL MODEL;

EID: 33750543338     PISSN: 03036812     EISSN: 14321416     Source Type: Journal    
DOI: 10.1007/s00285-006-0031-0     Document Type: Article
Times cited : (36)

References (32)
  • 1
    • 10844238913 scopus 로고    scopus 로고
    • Maximum-likelihood estimation of demographic parameters using the frequency spectrum of unlinked single-nucleotide polymorphisms
    • Adams, M., Hudson, R.R.: Maximum-likelihood estimation of demographic parameters using the frequency spectrum of unlinked single-nucleotide polymorphisms. Genetics 168, 1699-1712 (2004)
    • (2004) Genetics , vol.168 , pp. 1699-1712
    • Adams, M.1    Hudson, R.R.2
  • 2
    • 24144486294 scopus 로고    scopus 로고
    • A note on pseudolikelihood constructed from marginal densities
    • Cox, D.R., Reid, N.: A note on pseudolikelihood constructed from marginal densities. Biometrika 91, 729-737 (2004)
    • (2004) Biometrika , vol.91 , pp. 729-737
    • Cox, D.R.1    Reid, N.2
  • 3
    • 0141905274 scopus 로고    scopus 로고
    • Consistency of estimators of the population-scaled recombination rate
    • Fearnhead, P.: Consistency of estimators of the population-scaled recombination rate. Theor. Pop. Biol. 64, 67-79 (2003)
    • (2003) Theor. Pop. Biol. , vol.64 , pp. 67-79
    • Fearnhead, P.1
  • 4
    • 0035675042 scopus 로고    scopus 로고
    • Estimating recombination rates from population genetic data
    • Fearnhead, P., Donnelly, P.: Estimating recombination rates from population genetic data. Genetics 159, 1299-1318 (2001)
    • (2001) Genetics , vol.159 , pp. 1299-1318
    • Fearnhead, P.1    Donnelly, P.2
  • 5
    • 0036433716 scopus 로고    scopus 로고
    • Approximate likelihood methods for estimating local recombination rates
    • Fearnhead, P., Donnelly, P.: Approximate likelihood methods for estimating local recombination rates. P. J. Roy. Stat. Soc. B 64, 657-680 (2002)
    • (2002) P. J. Roy. Stat. Soc. B , vol.64 , pp. 657-680
    • Fearnhead, P.1    Donnelly, P.2
  • 7
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman, N., Yang, Z.: A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11, 725-736 (1994)
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 8
    • 0030498194 scopus 로고    scopus 로고
    • Ancestral inference from samples of DNA sequences with recombination
    • Griffiths, R.C., Marjoram, P.: Ancestral inference from samples of DNA sequences with recombination. J. Comput. Biol. 3, 479-502 (1996)
    • (1996) J. Comput. Biol. , vol.3 , pp. 479-502
    • Griffiths, R.C.1    Marjoram, P.2
  • 10
    • 34548452457 scopus 로고
    • Simulating probability distributions in the coalescent
    • Griffiths, R.C., Tavaré, S.: Simulating probability distributions in the coalescent. Theor. Pop. Biol. 46, 131-159 (1994)
    • (1994) Theor. Pop. Biol. , vol.46 , pp. 131-159
    • Griffiths, R.C.1    Tavaré, S.2
  • 11
    • 0028782096 scopus 로고
    • Sampling theory for neutral alleles in varying environment
    • Griffiths, R.C., Tavaré, S.: Sampling theory for neutral alleles in varying environment. Phil. Trans. R. Soc. Lond. B 344, 403-410 (1994)
    • (1994) Phil. Trans. R. Soc. Lond. B , vol.344 , pp. 403-410
    • Griffiths, R.C.1    Tavaré, S.2
  • 12
    • 0001129760 scopus 로고    scopus 로고
    • Markov chain inference methods in population genetics
    • Griffiths, R.C., Tavaré, S.: Markov chain inference methods in population genetics. Math. Comput. Modelling 23, (8/9), 141-158 (1996)
    • (1996) Math. Comput. Modelling , vol.23 , Issue.8-9 , pp. 141-158
    • Griffiths, R.C.1    Tavaré, S.2
  • 15
    • 0020744702 scopus 로고
    • Properties of the neutral alelle model with intergenic recombiantion
    • Hudson, R.R.: Properties of the neutral alelle model with intergenic recombiantion. Theor. Pop. Biol. 23, 183-201 (1983)
    • (1983) Theor. Pop. Biol. , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 16
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • Hudson, R.R.: Gene genealogies and the coalescent process. Oxford Surv. Evol. Biol. 7, 1-47 (1991)
    • (1991) Oxford Surv. Evol. Biol. , vol.7 , pp. 1-47
    • Hudson, R.R.1
  • 17
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • Hudson, R.R.: Two-locus sampling distributions and their application. Genetics 159, 1805-1817 (2001)
    • (2001) Genetics , vol.159 , pp. 1805-1817
    • Hudson, R.R.1
  • 18
    • 33750567866 scopus 로고    scopus 로고
    • Joint effects of genetic hitchhiking and background selection on neutral variation
    • Kim, Y., Stephan, W.: Joint effects of genetic hitchhiking and background selection on neutral variation. Genetics 155, 1414-1427 (2002)
    • (2002) Genetics , vol.155 , pp. 1414-1427
    • Kim, Y.1    Stephan, W.2
  • 20
    • 0033756316 scopus 로고    scopus 로고
    • Maximum likelihood estimation of recombination rates from population data
    • Kuhner, M.K., Yamato, J., Felsenstein, J.: Maximum likelihood estimation of recombination rates from population data. Genetics 156, 1393-1401 (2000)
    • (2000) Genetics , vol.156 , pp. 1393-1401
    • Kuhner, M.K.1    Yamato, J.2    Felsenstein, J.3
  • 21
    • 1642282195 scopus 로고    scopus 로고
    • The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations
    • Marth, G., Czabarka, E., Murvai, J., Sherry, S.T.: The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations. Genetics 166, 351-372 (2004)
    • (2004) Genetics , vol.166 , pp. 351-372
    • Marth, G.1    Czabarka, E.2    Murvai, J.3    Sherry, S.T.4
  • 22
    • 0036199914 scopus 로고    scopus 로고
    • A coalescent-based method for detecting and estimating recombination from gene sequences
    • McVean, G., Awadalla, P., Fearnhead, P.: A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160, 1231-1241 (2002)
    • (2002) Genetics , vol.160 , pp. 1231-1241
    • McVean, G.1    Awadalla, P.2    Fearnhead, P.3
  • 23
    • 0033965571 scopus 로고    scopus 로고
    • Estimation of population parameters and recombination rates from single nucleotide polymorphisms
    • Nielsen, R.: Estimation of population parameters and recombination rates from single nucleotide polymorphisms. Genetics 154, 931-942 (2000)
    • (2000) Genetics , vol.154 , pp. 931-942
    • Nielsen, R.1
  • 24
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: A Markov chain Monte Carlo approach
    • Nielsen, R., Wakeley, J.: Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158, 885-896 (2001)
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 25
    • 33750557091 scopus 로고    scopus 로고
    • Composite likelihood estimation applied to single nucleotide polymorphism (SNP) data
    • Nielsen, R., Wiuf, C.: Composite likelihood estimation applied to single nucleotide polymorphism (SNP) data. ISI Conference Proceedings (2005)
    • (2005) ISI Conference Proceedings
    • Nielsen, R.1    Wiuf, C.2
  • 26
    • 0000913208 scopus 로고    scopus 로고
    • Coalescent theory
    • Balding, D.J., Bishop, M.J., Cannings, C. (eds.) J Wiley, New York
    • Nordborg, M.: Coalescent theory. In: Balding, D.J., Bishop, M.J., Cannings, C. (eds.) Handbook of Statistical Genetics. pp. 179-212 J Wiley, New York (2001)
    • (2001) Handbook of Statistical Genetics , pp. 179-212
    • Nordborg, M.1
  • 27
    • 25444483583 scopus 로고    scopus 로고
    • Consistency of statistical models in the stationary case
    • Peskir, G.: Consistency of statistical models in the stationary case. Math. Scand. 78, 293-319 (1996)
    • (1996) Math. Scand. , vol.78 , pp. 293-319
    • Peskir, G.1
  • 29
    • 0034354581 scopus 로고    scopus 로고
    • Inference in molecular population genetics
    • Stephens, M., Donnelly, P.: Inference in molecular population genetics. J. Roy. Stat. Soc. B 62, 605-655 (2000)
    • (2000) J. Roy. Stat. Soc. B , vol.62 , pp. 605-655
    • Stephens, M.1    Donnelly, P.2
  • 30
    • 0002644952 scopus 로고
    • Maximum likelihood estimation of misspecified models
    • White, H.: Maximum likelihood estimation of misspecified models. Econometrica 50, 1-26 (1982)
    • (1982) Econometrica , vol.50 , pp. 1-26
    • White, H.1
  • 31
    • 0033907068 scopus 로고    scopus 로고
    • A coalescence approach to gene conversion
    • Wiuf C.: A coalescence approach to gene conversion. Theor. Pop. Biol. 57, 357-367 (2000)
    • (2000) Theor. Pop. Biol. , vol.57 , pp. 357-367
    • Wiuf, C.1
  • 32
    • 0034096027 scopus 로고    scopus 로고
    • The coalescent with gene conversion
    • Wiuf, C., Hein, J.: The coalescent with gene conversion. Genetics 155, 451-462 (2000)
    • (2000) Genetics , vol.155 , pp. 451-462
    • Wiuf, C.1    Hein, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.