-
1
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
AKASHI, H., 1995 Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
2
-
-
0029985179
-
Molecular evolution between Drosophila melanogaster and D. simulans: Reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster
-
AKASHI, H., 1996 Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster. Genetics 144: 1297-1307.
-
(1996)
Genetics
, vol.144
, pp. 1297-1307
-
-
Akashi, H.1
-
3
-
-
0030903283
-
Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila
-
AKASHI, H., and S. W. SCHAEFFER, 1997 Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila. Genetics 146: 295-307.
-
(1997)
Genetics
, vol.146
, pp. 295-307
-
-
Akashi, H.1
Schaeffer, S.W.2
-
4
-
-
0003455528
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
ASHBURNER, M., 1989 Drosophila: A Laboratory Handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Drosophila: a Laboratory Handbook
-
-
Ashburner, M.1
-
5
-
-
0037567638
-
Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila
-
BACHTROG, D., 2003a Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila. Nat. Genet. 34: 215-219.
-
(2003)
Nat. Genet.
, vol.34
, pp. 215-219
-
-
Bachtrog, D.1
-
6
-
-
0346991745
-
Protein evolution and codon usage bias on the neo-sex chromosomes of Drosophila miranda
-
BACHTROG, D., 2003b Protein evolution and codon usage bias on the neo-sex chromosomes of Drosophila miranda. Genetics 165: 1221-1232.
-
(2003)
Genetics
, vol.165
, pp. 1221-1232
-
-
Bachtrog, D.1
-
7
-
-
0037149526
-
Reduced adaptation of a non-recombining neo-Ychromosome
-
BACHTROG, D., and B. CHARLESWORTH, 2002 Reduced adaptation of a non-recombining neo-Ychromosome. Nature 416: 323-326.
-
(2002)
Nature
, vol.416
, pp. 323-326
-
-
Bachtrog, D.1
Charlesworth, B.2
-
8
-
-
0030817264
-
Rates of DNA sequence evolution are not sex-biased in Drosophila melanogaster and D. simulans
-
BAUER, V. L., and C. F. AQUADRO, 1997 Rates of DNA sequence evolution are not sex-biased in Drosophila melanogaster and D. simulans. Mol. Biol. Evol. 14: 1252-1257.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1252-1257
-
-
Bauer, V.L.1
Aquadro, C.F.2
-
9
-
-
0036964070
-
Molecular population genetics of Xdh and the evolution of base composition in Drosophila
-
BEGUN, D. J., and P. WHITLEY, 2002 Molecular population genetics of Xdh and the evolution of base composition in Drosophila. Genetics 162: 1725-1735.
-
(2002)
Genetics
, vol.162
, pp. 1725-1735
-
-
Begun, D.J.1
Whitley, P.2
-
10
-
-
3042544623
-
The genomic rate of adaptive amino acid substitution in Drosophila
-
BIERNE, N., and A. EYRE-WALKER, 2004 The genomic rate of adaptive amino acid substitution in Drosophila. Mol. Biol. Evol. 21: 1350-1360.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1350-1360
-
-
Bierne, N.1
Eyre-Walker, A.2
-
11
-
-
0035986891
-
Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution
-
BIRDSELL, J. A., 2002 Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution. Mol. Biol. Evol. 19: 1181-1197.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1181-1197
-
-
Birdsell, J.A.1
-
12
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
BULMER, M., 1991 The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
14
-
-
1842527889
-
Using comparative genomic data to test for fast-X evolution
-
COUNTERMAN, B. A., D. ORTIZ-BARRIENTOS and M. A. NOOR, 2004 Using comparative genomic data to test for fast-X evolution. Evolution 58: 656-660.
-
(2004)
Evolution
, vol.58
, pp. 656-660
-
-
Counterman, B.A.1
Ortiz-Barrientos, D.2
Noor, M.A.3
-
15
-
-
0033551151
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
-
DURET, L., and D. MOUCHIROUD, 1999 Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc. Natl. Acad. Sci. USA 96: 4482-4487.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4482-4487
-
-
Duret, L.1
Mouchiroud, D.2
-
16
-
-
0037186608
-
Testing the neutral theory of molecular evolution with genomic data from Drosophila
-
FAV, J. C., G. J. WYCKOFF and C. I. WU, 2002 Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature 415: 1024-1026.
-
(2002)
Nature
, vol.415
, pp. 1024-1026
-
-
Fav, J.C.1
Wyckoff, G.J.2
Wu, C.I.3
-
17
-
-
0033168465
-
Isochores result from mutation not selection
-
FRANCINO, M. P., and H. OCHMAN, 1999 Isochores result from mutation not selection. Nature 400: 30-31.
-
(1999)
Nature
, vol.400
, pp. 30-31
-
-
Francino, M.P.1
Ochman, H.2
-
18
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
FU, Y. X., and W. H. LI, 1993 Statistical tests of neutrality of mutations. Genetics 133: 693-709.
-
(1993)
Genetics
, vol.133
, pp. 693-709
-
-
Fu, Y.X.1
Li, W.H.2
-
19
-
-
0034766004
-
GC-content evolution in mammalian genomes: The biased gene conversion hypothesis
-
GALTIER, N., G. PIGANEAU, D. MOUCHIROUD and L. DURET, 2001 GC-content evolution in mammalian genomes: the biased gene conversion hypothesis. Genetics 159: 907-911.
-
(2001)
Genetics
, vol.159
, pp. 907-911
-
-
Galtier, N.1
Piganeau, G.2
Mouchiroud, D.3
Duret, L.4
-
20
-
-
0032862461
-
DNA sequence variation and the recombinational landscape in Drosophila pseudoobscura: A study of the second chromosome
-
HAMBLIN, M. T., and C. F. AQUADRO, 1999 DNA sequence variation and the recombinational landscape in Drosophila pseudoobscura: a study of the second chromosome. Genetics 153: 859-869.
-
(1999)
Genetics
, vol.153
, pp. 859-869
-
-
Hamblin, M.T.1
Aquadro, C.F.2
-
21
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
HUDSON, R. R., M. KREITMAN and M. AGUADE, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguade, M.3
-
22
-
-
0019474499
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
-
IKEMURA, T., 1981 Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. J. Mol. Biol. 146: 1-21.
-
(1981)
J. Mol. Biol.
, vol.146
, pp. 1-21
-
-
Ikemura, T.1
-
23
-
-
0000732090
-
Evolution of protein molecules
-
edited by H. N. MUNRO. Academic Press, New York
-
JUKES, T. H., and C. R. CANTOR, 1969 Evolution of protein molecules, pp. 21-132 in Mammalian Protein Metabolism, edited by H. N. MUNRO. Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
24
-
-
1542316915
-
MCALIGN: Stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution
-
KEIGHTLEY, P. D., and T. JOHNSON, 2004 MCALIGN: stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution. Genome Res. 14: 442-450.
-
(2004)
Genome Res.
, vol.14
, pp. 442-450
-
-
Keightley, P.D.1
Johnson, T.2
-
26
-
-
0028040734
-
The effects of mutation and natural selection on codon bias in the genes of Drosophila
-
KLIMAN, R. M., and J. HEY, 1994 The effects of mutation and natural selection on codon bias in the genes of Drosophila. Genetics 137: 1049-1056.
-
(1994)
Genetics
, vol.137
, pp. 1049-1056
-
-
Kliman, R.M.1
Hey, J.2
-
27
-
-
0033832602
-
Molecular population genetics of X-linked genes in Drosophila pseudoobscura
-
KOVACEVIC, M., and S. W. SCHAEFFER, 2000 Molecular population genetics of X-linked genes in Drosophila pseudoobscura. Genetics 156: 155-172.
-
(2000)
Genetics
, vol.156
, pp. 155-172
-
-
Kovacevic, M.1
Schaeffer, S.W.2
-
28
-
-
0036215045
-
Inferring the history of speciation from multilocus DNA sequence data: The case of Drosophila pseudoobscura and close relatives
-
MACHADO, C. A., R. M. KLIMAN, J. A. MARKERT and J. HEY, 2002 Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Mol. Biol. Evol. 19: 472-488.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 472-488
-
-
Machado, C.A.1
Kliman, R.M.2
Markert, J.A.3
Hey, J.4
-
29
-
-
0000470398
-
The sex-determining mechanism of Drosophila miranda
-
MACKNIGHT, R. H., 1939 The sex-determining mechanism of Drosophila miranda. Genetics 24: 180-201.
-
(1939)
Genetics
, vol.24
, pp. 180-201
-
-
MacKnight, R.H.1
-
30
-
-
0038543069
-
Biased gene conversion: Implications for genome and sex evolution
-
MARAIS, G., 2003 Biased gene conversion: implications for genome and sex evolution. Trends Genet. 19: 330-338.
-
(2003)
Trends Genet.
, vol.19
, pp. 330-338
-
-
Marais, G.1
-
31
-
-
0035012056
-
Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans
-
MARAIS, G., and L. DURET, 2001 Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans. J. Mol. Evol. 52: 275-280.
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 275-280
-
-
Marais, G.1
Duret, L.2
-
32
-
-
0036725703
-
Hill-Robertson interference is a minor determinant of variations in codon bias across Drosophila melanogaster and Caenorhabditis elegans genomes
-
MARAIS, G., and G. PIGANEAU, 2002 Hill-Robertson interference is a minor determinant of variations in codon bias across Drosophila melanogaster and Caenorhabditis elegans genomes. Mol. Biol. Evol. 19: 1399-1406.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1399-1406
-
-
Marais, G.1
Piganeau, G.2
-
33
-
-
1142302213
-
Selection on codon usage in Drosophila americana
-
MASIDE, X., A. W. LEE and B. CHARLESWORTH, 2004 Selection on codon usage in Drosophila americana. Curr. Biol. 14: 150-154.
-
(2004)
Curr. Biol.
, vol.14
, pp. 150-154
-
-
Maside, X.1
Lee, A.W.2
Charlesworth, B.3
-
34
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
MCDONALD, J. H., and M. KREITMAN, 1991 Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
35
-
-
0032749124
-
A population genetic model for the evolution of synonymnous codon usage: Patterns and predictions
-
MCVEAN, G., and B. CHARLESWORTH, 1999 A population genetic model for the evolution of synonymnous codon usage: patterns and predictions. Genet. Res. 74: 145-158.
-
(1999)
Genet. Res.
, vol.74
, pp. 145-158
-
-
McVean, G.1
Charlesworth, B.2
-
37
-
-
0242582368
-
Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: Reduced efficacy of weak selection on synonymous variation
-
PEREZ, J. A., A. MUNTE, J. ROZAS, C. SEGARRA and M. AGUADE, 2003 Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation. Mol. Biol. Evol. 20: 1867-1875.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1867-1875
-
-
Perez, J.A.1
Munte, A.2
Rozas, J.3
Segarra, C.4
Aguade, M.5
-
39
-
-
0026513924
-
Nucleotide polymorphism at the xanthine dehydrogenase locus in Drosophila pseudoobscura
-
RILEY, M. A., S. R. KAPLAN and M. VEUILLE, 1992 Nucleotide polymorphism at the xanthine dehydrogenase locus in Drosophila pseudoobscura. Mol. Biol. Evol. 9: 56-69.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 56-69
-
-
Riley, M.A.1
Kaplan, S.R.2
Veuille, M.3
-
40
-
-
0032972599
-
DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
-
ROZAS, J. R. R., 1999 DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
-
(1999)
Bioinformatics
, vol.15
, pp. 174-175
-
-
Rozas, J.R.R.1
-
41
-
-
0037186564
-
Adaptive protein evolution in Drosophila
-
SMITH, N. G., and A. EYRE-WALKER, 2002 Adaptive protein evolution in Drosophila. Nature 415: 1022-1024.
-
(2002)
Nature
, vol.415
, pp. 1022-1024
-
-
Smith, N.G.1
Eyre-Walker, A.2
-
43
-
-
7344224895
-
Enigma of Y chromosome degeneration: Neo-Y and neo-X chromosomes of Drosophila miranda a model for sex chromosome evolution
-
STEINEMANN, M., and S. STEINEMANN, 1998 Enigma of Y chromosome degeneration: neo-Y and neo-X chromosomes of Drosophila miranda a model for sex chromosome evolution. Genetica 102/ 103: 409-420.
-
(1998)
Genetica
, vol.102-103
, pp. 409-420
-
-
Steinemann, M.1
Steinemann, S.2
-
44
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
45
-
-
0032758253
-
Local recombination and mutation effects on molecular evolution in Drosophila
-
TAKANO-SHIMIZU, T., 1999 Local recombination and mutation effects on molecular evolution in Drosophila. Genetics 153: 1285-1296.
-
(1999)
Genetics
, vol.153
, pp. 1285-1296
-
-
Takano-Shimizu, T.1
-
46
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Pop. Biol. 7: 256-276.
-
(1975)
Theor. Pop. Biol.
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
47
-
-
0033824906
-
Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes
-
WEINREICH, D. M., and D. M. RAND, 2000 Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes. Genetics 156: 385-399.
-
(2000)
Genetics
, vol.156
, pp. 385-399
-
-
Weinreich, D.M.1
Rand, D.M.2
-
48
-
-
8544246487
-
A maximum likelihood ratio test of the standard neutral model
-
WRIGHT, S. I., and B. CHARLESWORTH, 2004 A maximum likelihood ratio test of the standard neutral model. Genetics 168: 1071-1076.
-
(2004)
Genetics
, vol.168
, pp. 1071-1076
-
-
Wright, S.I.1
Charlesworth, B.2
-
49
-
-
0034020791
-
Contrasting patterns of molecular evolution of the genes on the new and old sex chromosomes of Drosophila miranda
-
YI, S., and B. CHARLESWORTH, 2000 Contrasting patterns of molecular evolution of the genes on the new and old sex chromosomes of Drosophila miranda. Mol. Biol. Evol. 17: 703-717.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 703-717
-
-
Yi, S.1
Charlesworth, B.2
-
50
-
-
0042318498
-
A survey of chromosomal and nucleotide sequence variation in Drosophila miranda
-
YI, S., D. BACHTROG and B. CHARLESWORTH, 2003 A survey of chromosomal and nucleotide sequence variation in Drosophila miranda. Genetics 164: 1369-1381.
-
(2003)
Genetics
, vol.164
, pp. 1369-1381
-
-
Yi, S.1
Bachtrog, D.2
Charlesworth, B.3
|