SMARCA5 methylation and expression in gastric cancer

Cancer Investigation

Volumn 29, Issue 2, 2011, Pages 162-166

  Gigek, Carolina Oliveira ^a   Lisboa, Luara Carolina Frias ^a   Leal, Mariana Ferreira ^a   Silva, Patricia Natalia Oliveira ^a   Lima, Eleonidas Moura ^b   Khayat, André Salim ^c   Assumpção, Paulo Pimentel ^c,d   Burbano, Rommel Rodriguez ^c   Smith, Marilia De Arruda Cardoso ^a  

^a FEDERAL UNIVERSITY OF SÃO PAULO   (Brazil)

^b FEDERAL UNIVERSITY OF PIAUÍ   (Brazil)

^c FEDERAL UNIVERSITY OF PARÁ   (Brazil)

^d Hospital Universitário João de Barros Barreto   (France)

Author keywords

DNA methylation; Epigenetic; IHC; Protein expression; SMARCA5

Indexed keywords

SMARCA5 PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ARTICLE; CANCER CLASSIFICATION; CANCER LOCALIZATION; CANCER STAGING; CARCINOGENESIS; CONTROLLED STUDY; DISTANT METASTASIS; DNA METHYLATION; FEMALE; GENE EXPRESSION; HELICOBACTER PYLORI; HUMAN; HUMAN TISSUE; IMMUNOHISTOCHEMISTRY; IMMUNOREACTIVITY; LYMPH NODE METASTASIS; MALE; METHYLATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; STOMACH ADENOCARCINOMA; STOMACH MUCOSA;

ADENOSINE TRIPHOSPHATASES; ADULT; AGED; CHROMOSOMAL PROTEINS, NON-HISTONE; DNA METHYLATION; FEMALE; HUMANS; MALE; MIDDLE AGED; PROMOTER REGIONS, GENETIC; STOMACH NEOPLASMS;

EID: 79251496644     PISSN: 07357907     EISSN: 15324192     Source Type: Journal    
DOI: 10.3109/07357907.2010.543365     Document Type: Article

References (29)

1. Brenner H, Rothenbacher D, Arndt V. Epidemiology of stomach cancer. Methods Mol Biol 2009;472:467-477.
2. Mohamed MA, Greif PA, Diamond J, Sharaf O, Maxwell P, Montironi R, et al. Epigenetic events, remodelling enzymes and their relationship to chromatin organization in prostatic intraepithelial neoplasia and prostatic adenocarcinoma. BJU Int 2007;99(4):908-915.
3. Stopka T, Skoultchi AI. The ISWI ATPase Snf2h is required for early mouse development. PNAS 2003;100(24):14097-14102.
4. Becker PB, Horz W. ATP-dependent nucleosome remodeling. Annu Rev Biochem 2002;71:247-273.
5. Fyodorov DV, Kadonaga JT. The many faces of chromatin remodeling: switching beyond transcription. Cell 2001;106(5):523-525.
6. Varga-Weisz, P.. ATP-dependent chromatin remodeling factors: nucleosome shufflers with many missions. Oncogene 2001;20(24):3076-3085.
7. Reisman D, Glaros S, Thompson EA. The SWI/SNF complex and cancer. Oncogene 2009;28(14):1653-1668.
8. Li LC, Dahiya R. Meth Primer: designing primers for methylation PCRs. Bioinformatics (Oxford, England) 2002;18(11):1427-1431.
9. Akiyama Y. TFSEARCH: searching Transcription Factor Binding Sites. Available from: http://www.cbrc.jp/research/db/TFSEARCH.html.
10. Richardson B. Impact of aging on DNA methylation. Ageing Res Rev 2003;2(3):245-261.
11. Lauren P. The two histological main types of gastric carcinoma: diffuse and so-called intestinal-type carcinoma. An attempt at a histo-clinical classification. Acta pathologica et microbiologica Scandinavica 1965;64:31-49.
12. Sobin LH, Wittekind CH. TNM: Classification of Malignant Tumours, 6th edition. New York: Wiley-Liss, 2002.
13. Herman JG, Graff JR, Myohanen S, Nelkin BD, Baylin SB. Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. PNAS 1996;93(18):9821-9826.
14. Silva PN, Gigek CO, Leal MF, Bertolucci PH, de Labio RW, Payao SL, et al. Promoter methylation analysis of SIRT3, SMARCA5, HTERT and CDH1 genes in aging and Alzheimer's disease. J Alzheimers Dis 2008;13(2):173-176.
15. Stopka T, Zakova D, Fuchs O, Kubrova O, Blafkova J, Jelinek J, et al. Chromatin remodeling gene SMARCA5 is dysregulated in primitive hematopoietic cells of acute leukemia. Leukemia 2000;14(7):1247-1252.
16. Collins N, Poot RA, Kukimoto I, Garcia-Jimenez C, Dellaire G, Varga-Weisz PD. An ACF1-ISWI chromatin-remodeling complex is required for DNA replication through heterochromatin. Nat Genet 2002;32(4):627-632.
17. Aihara T, Miyoshi Y, Koyama K, Suzuki M, Takahashi E, Monden M, et al. Cloning and mapping of SMARCA5 encoding hSNF2H, a novel human homologue of Drosophila ISWI. Cytogenet Cell Genet 1998;81(3-4): 191-193.
18. Varga-Weisz, P. D., Becker PB. Chromatin-remodeling factors: machines that regulate? Curr Opin Cell Biol 1998;10(3):346-353.
19. Corona DF, Langst G, Clapier CR, Bonte EJ, Ferrari S, Tamkun JW, et al. ISWI is an ATP-dependent nucleosome remodeling factor. Mol Cell 1999;3(2):239-245.
20. Falbo KB, Shen X. Chromatin remodeling in DNA replication. J Cell Biochem 2006;97(4):684-689.
21. Kingston RE, Narlikar GJ. ATP-dependent remodeling and acetylation as regulators of chromatin fluidity. Genes & Dev 1999;13(18):2339-2352.
22. Nagase H, Ghosh S. Epigenetics: differential DNA methylation in mammalian somatic tissues. FEBS J 2008;275(8):1617-1623.
23. Esteller M. CpG island hypermethylation and tumor suppressor genes: a booming present, a brighter future. Oncogene 2002;21(35):5427-5440.
24. Leal MF, Lima EM, Silva PN, Assumpcao PP, Calcagno DQ, Payao SL, et al. Promoter hypermethylation of CDH1, FHIT, MTAP and PLAGL1 in gastric adenocarcinoma in individuals from Northern Brazil. World J Gastroenterol 2007;13(18):2568-2574.
25. Lima EM, Leal MF, Motta FJN, Assumpcao PP, Harada ML, C. SMA, et al. Study of methylation pattern of de Novo DNA methytransferase genes and its correlation with DNA methylation pattern of RUNX3 in individuals with gastric cancer from northern region of Brazil. Int J Morphol 2007;25(4):817-824.
26. Lima EM, Leal MF, Burbano RR, Khayat AS, Assumpcao PP, Bello MJ, et al. Methylation status of ANAPC1, CDKN2A and TP53 promoter genes in individuals with gastric cancer. Braz J Med Biol Res 2008;41(6):539-543.
27. Moura Lima, E., Ferreira Leal M, Cardoso Smith Mde A, Rodriguez Burbano R, Pimentel de Assumpcao P, Bello MJ, et al. DNA mismatch repair gene methylation in gastric cancer in individuals from northern Brazil. Biocell 2008;32(3):237-243.
28. Gigek CO, Leal MF, Silva PNO, Lisboa LCF, Lima EM, Calcagno DQ, et al. hTERT methylation and expression in gastric cancer. Biomarkers 2009;14(8):630.
29. Gigek CO, Leal MF, Lisboa LC, Silva PN, Chen ES, Lima EM, et al. Insulin-like growth factor binding protein-3 gene methylation and protein expression in gastric adenocarcinoma. Growth Horm IGF Res 2010;20(3):234-238.