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Volumn 103, Issue 2, 2011, Pages 212-223

Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities

Author keywords

Algebraic geometry; Bifurcation parameters; Biomass; Calvin cycle; Multistationarity

Indexed keywords

CARBON DIOXIDE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; PHOSPHOGLYCERATE KINASE; PHOSPHORIBULOKINASE; RIBULOSEBISPHOSPHATE CARBOXYLASE;

EID: 78751705367     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2010.10.015     Document Type: Article
Times cited : (25)

References (49)
  • 2
    • 0242515913 scopus 로고    scopus 로고
    • The JNK cascade as a biochemical switch in mammalian cells ultrasensitive and all-or-none responses
    • Bagowski C.P., Besser J., Frey C.R., Ferrell J.E. The JNK cascade as a biochemical switch in mammalian cells ultrasensitive and all-or-none responses. Curr. Opin. Biol. 2003, 13:315-320.
    • (2003) Curr. Opin. Biol. , vol.13 , pp. 315-320
    • Bagowski, C.P.1    Besser, J.2    Frey, C.R.3    Ferrell, J.E.4
  • 4
    • 0021835107 scopus 로고
    • On the stability of coupled chemical oscillators
    • Bar-Eli K. On the stability of coupled chemical oscillators. Physica D 1985, 14:242-252.
    • (1985) Physica D , vol.14 , pp. 242-252
    • Bar-Eli, K.1
  • 5
    • 0014414710 scopus 로고
    • Photosynthesis by isolated chloroplasts I. Diffusion of labeled photosynthetic intermediates between isolated chloroplasts and suspending medium
    • Basshama J., Kirka M., Jensen R. Photosynthesis by isolated chloroplasts I. Diffusion of labeled photosynthetic intermediates between isolated chloroplasts and suspending medium. Biochem. Biophys. Acta (BBA)-Bioenerg. 1968, 153:211-218.
    • (1968) Biochem. Biophys. Acta (BBA)-Bioenerg. , vol.153 , pp. 211-218
    • Basshama, J.1    Kirka, M.2    Jensen, R.3
  • 7
    • 53049099395 scopus 로고    scopus 로고
    • Tweaking biological switches through a better understanding of bistability behavior
    • Chatterjee A., Kaznessis Y.N., Hu W.-S. Tweaking biological switches through a better understanding of bistability behavior. Curr. Opin. Biotechnol. 2008, 19:475-481.
    • (2008) Curr. Opin. Biotechnol. , vol.19 , pp. 475-481
    • Chatterjee, A.1    Kaznessis, Y.N.2    Hu, W.-S.3
  • 8
    • 37649013307 scopus 로고    scopus 로고
    • Subnetwork analysis reveals dynamic features of complex (bio)chemical networks
    • U.S.A. 104 (December (49)), 19175-19180. URL.
    • Conradi, C., Flockerzi, D., Raisch, J., Stelling, J., 2007. Subnetwork analysis reveals dynamic features of complex (bio)chemical networks. Proc. Natl. Acad. Sci. U.S.A. 104 (December (49)), 19175-19180. URL http://dx.doi.org/10.1073/pnas.0705731104.
    • (2007) Proc. Natl. Acad. Sci.
    • Conradi, C.1    Flockerzi, D.2    Raisch, J.3    Stelling, J.4
  • 10
    • 33744744785 scopus 로고    scopus 로고
    • Understanding bistability in complex enzyme-driven reaction networks
    • U.S.A. 103 (June (23)),. URL.
    • Craciun, G., Tang, Y., Feinberg, M., 2006. Understanding bistability in complex enzyme-driven reaction networks. Proc. Natl. Acad. Sci. U.S.A. 103 (June (23)), 8697-8702. URL http://dx.doi.org/10.1073/pnas.0602767103.
    • (2006) Proc. Natl. Acad. Sci. , pp. 8697-8702
    • Craciun, G.1    Tang, Y.2    Feinberg, M.3
  • 11
    • 33751530567 scopus 로고
    • Experimental and theoretical studies of a coupled chemical oscillator: phase death, multistability, and in-phase and out-of-phase entrainment
    • Crowley M.F., Epstein I. Experimental and theoretical studies of a coupled chemical oscillator: phase death, multistability, and in-phase and out-of-phase entrainment. J. Phys. Chem. 1989, 93:2496-2502.
    • (1989) J. Phys. Chem. , vol.93 , pp. 2496-2502
    • Crowley, M.F.1    Epstein, I.2
  • 12
    • 0000103711 scopus 로고
    • Extinction of oscillations in forced and coupled reaction cells
    • Dolnik M., Marek M. Extinction of oscillations in forced and coupled reaction cells. J. Phys. Chem. 1988, 92:2452-2455.
    • (1988) J. Phys. Chem. , vol.92 , pp. 2452-2455
    • Dolnik, M.1    Marek, M.2
  • 13
    • 0001364051 scopus 로고
    • The existence and uniqueness of steady states for a class of chemical reaction networks
    • Feinberg M. The existence and uniqueness of steady states for a class of chemical reaction networks. Arch. Ration. Mech. Anal. 1995, 132:311-370.
    • (1995) Arch. Ration. Mech. Anal. , vol.132 , pp. 311-370
    • Feinberg, M.1
  • 14
    • 0000112210 scopus 로고
    • Multiple steady states for chemical reaction networks of deficiency one
    • Feinberg M. Multiple steady states for chemical reaction networks of deficiency one. Arch. Ration. Mech. Anal. 1995, 132:371-406.
    • (1995) Arch. Ration. Mech. Anal. , vol.132 , pp. 371-406
    • Feinberg, M.1
  • 15
    • 0041631740 scopus 로고    scopus 로고
    • The chemical reaction network toolbox (CRNT)
    • version 1.1.
    • Feinberg, M., Ellison, P., 2000. The chemical reaction network toolbox (CRNT). version 1.1. http://www.che.eng.ohio-state.edu/feinberg/crnt/.
    • (2000)
    • Feinberg, M.1    Ellison, P.2
  • 16
    • 0000809694 scopus 로고
    • Balance between metabolite accumulation and transport in relation to photosynthesis by isolated spinach chloroplasts
    • April 4
    • Flügge U.I., Freisl M., Heldt H.W. Balance between metabolite accumulation and transport in relation to photosynthesis by isolated spinach chloroplasts. Plant Physiol. 1980, 65(April 4):574-577.
    • (1980) Plant Physiol. , vol.65 , pp. 574-577
    • Flügge, U.I.1    Freisl, M.2    Heldt, H.W.3
  • 17
    • 11244271554 scopus 로고    scopus 로고
    • Bernstein's second theorem and Viro's method for sparse polynomial systems in chemistry
    • Gatermann K., Wolfrum M. Bernstein's second theorem and Viro's method for sparse polynomial systems in chemistry. Adv. Appl. Math. 2005, 34:252-294.
    • (2005) Adv. Appl. Math. , vol.34 , pp. 252-294
    • Gatermann, K.1    Wolfrum, M.2
  • 18
    • 36248952170 scopus 로고    scopus 로고
    • The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks
    • Grimbs, S., Selbig, J., Bulik, S., Holzhütter, H.-G., Steuer, R., 2007. The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks. Mol. Syst. Biol. 3, 146. URL http://dx.doi.org/10.1038/msb4100186.
    • (2007) Mol. Syst. Biol. , vol.3 , pp. 146
    • Grimbs, S.1    Selbig, J.2    Bulik, S.3    Holzhütter, H.-G.4    Steuer, R.5
  • 20
    • 0001302706 scopus 로고
    • Role of orthophosphate and other factors in the regulation of starch formation in leaves and isolated chloroplasts
    • June 6
    • Heldt H.W., Chon C.J., Maronde D. Role of orthophosphate and other factors in the regulation of starch formation in leaves and isolated chloroplasts. Plant Physiol. 1977, 59(June 6):1146-1155.
    • (1977) Plant Physiol. , vol.59 , pp. 1146-1155
    • Heldt, H.W.1    Chon, C.J.2    Maronde, D.3
  • 22
    • 0002351213 scopus 로고
    • Cell division, differentiation and dynamic clustering
    • Kaneko K., Yomo T. Cell division, differentiation and dynamic clustering. Physica D 1994, 75:89-102.
    • (1994) Physica D , vol.75 , pp. 89-102
    • Kaneko, K.1    Yomo, T.2
  • 23
    • 0036039060 scopus 로고    scopus 로고
    • Combinatorial complexity of pathway analysis in metabolic networks
    • Klamt S., Stelling J. Combinatorial complexity of pathway analysis in metabolic networks. Mol. Biol. Rep. 2002, 29(1-2):233-236.
    • (2002) Mol. Biol. Rep. , vol.29 , Issue.1-2 , pp. 233-236
    • Klamt, S.1    Stelling, J.2
  • 24
    • 85194537911 scopus 로고
    • A vialbe reaction-diffusion wave on the skin of pomacanthus, the marine angelfish
    • Kondo S., Asi R. A vialbe reaction-diffusion wave on the skin of pomacanthus, the marine angelfish. Nature 1995, 376:767-768.
    • (1995) Nature , vol.376 , pp. 767-768
    • Kondo, S.1    Asi, R.2
  • 25
    • 77649338370 scopus 로고    scopus 로고
    • Cooperative differentiation through clustering in multicellular populations
    • Koseska A., Ullner E., Volkov E., Kurths J., Garcia-Ojalvo J. Cooperative differentiation through clustering in multicellular populations. J. Theor. Biol. 2010, 263:189-202.
    • (2010) J. Theor. Biol. , vol.263 , pp. 189-202
    • Koseska, A.1    Ullner, E.2    Volkov, E.3    Kurths, J.4    Garcia-Ojalvo, J.5
  • 26
    • 34047145964 scopus 로고    scopus 로고
    • Inherent multistability in arrays of autoinducer coupled genetic oscillators
    • Koseska A., Volkov E., Zaikin A., Kurths J. Inherent multistability in arrays of autoinducer coupled genetic oscillators. Phys. Rev. E 2007, 75:031916.
    • (2007) Phys. Rev. E , vol.75 , pp. 031916
    • Koseska, A.1    Volkov, E.2    Zaikin, A.3    Kurths, J.4
  • 27
    • 0034282978 scopus 로고    scopus 로고
    • Subnetwork analysis for the determination of multiple steady states in complex reaction networks
    • Li H.Y., Ho P.Y. Subnetwork analysis for the determination of multiple steady states in complex reaction networks. Ind. Eng. Chem. Res. 2000, 39:3291-3297.
    • (2000) Ind. Eng. Chem. Res. , vol.39 , pp. 3291-3297
    • Li, H.Y.1    Ho, P.Y.2
  • 28
    • 33748737797 scopus 로고    scopus 로고
    • Spatial pattern formation in chemical and biological systems
    • Maini P.K., P K.J., Chau H.N.P. Spatial pattern formation in chemical and biological systems. J. Chem. Soc., Faraday Trans. 1997, 93(20):3601-3610.
    • (1997) J. Chem. Soc., Faraday Trans. , vol.93 , Issue.20 , pp. 3601-3610
    • Maini, P.K.1    P, K.J.2    Chau, H.N.P.3
  • 29
    • 77956195976 scopus 로고    scopus 로고
    • Steady state detection of chemical reaction networks using simplified analytical method
    • Martinez-Forero I., Pelaez-Lopez A., Villoslada P. Steady state detection of chemical reaction networks using simplified analytical method. PLoS ONE 2010, 5:e10823.
    • (2010) PLoS ONE , vol.5
    • Martinez-Forero, I.1    Pelaez-Lopez, A.2    Villoslada, P.3
  • 30
    • 47849106044 scopus 로고    scopus 로고
    • Regulative differentiation as bifurcation of interacting cell population
    • Nakajima A., Kaneko K. Regulative differentiation as bifurcation of interacting cell population. J. Theor. Biol. 2008, 253:779-787.
    • (2008) J. Theor. Biol. , vol.253 , pp. 779-787
    • Nakajima, A.1    Kaneko, K.2
  • 31
    • 0035109449 scopus 로고    scopus 로고
    • Photosynthetic capacity is differentially affected by reductions in sedoheptulose-1,7-bisphosphatase activity during leaf development in transgenic tobacco plants
    • February 2
    • Olçer H., Lloyd J.C., Raines C.A. Photosynthetic capacity is differentially affected by reductions in sedoheptulose-1,7-bisphosphatase activity during leaf development in transgenic tobacco plants. Plant Physiol. 2001, 125(February 2):982-989.
    • (2001) Plant Physiol. , vol.125 , pp. 982-989
    • Olçer, H.1    Lloyd, J.C.2    Raines, C.A.3
  • 32
    • 0033764285 scopus 로고    scopus 로고
    • The challenges of in silico biology
    • Palsson B.O. The challenges of in silico biology. Nat. Biotechnol. 2000, 18:1147-1150.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 1147-1150
    • Palsson, B.O.1
  • 33
    • 0024288428 scopus 로고
    • A mathematical model of the Calvin photosynthesis cycle
    • August 3
    • Pettersson G., Ryde-Pettersson U. A mathematical model of the Calvin photosynthesis cycle. Eur. J. Biochem. 1988, 175(August 3):661-672.
    • (1988) Eur. J. Biochem. , vol.175 , pp. 661-672
    • Pettersson, G.1    Ryde-Pettersson, U.2
  • 34
    • 0033975578 scopus 로고    scopus 로고
    • Modelling photosynthesis and its control
    • Spec No (February)
    • Poolman, M.G., Fell, D.A., Thomas, S., 2000. Modelling photosynthesis and its control. J. Exp. Bot. 51 Spec No (February), 319-328.
    • (2000) J. Exp. Bot. , vol.51 , pp. 319-328
    • Poolman, M.G.1    Fell, D.A.2    Thomas, S.3
  • 35
    • 0034826582 scopus 로고    scopus 로고
    • Computer modelling and experimental evidence for two steady states in the photosynthetic Calvin cycle
    • May 10
    • Poolman M.G., Olçer H., Lloyd J.C., Raines C.A., Fell D.A. Computer modelling and experimental evidence for two steady states in the photosynthetic Calvin cycle. Eur. J. Biochem. 2001, 268(May 10):2810-2816.
    • (2001) Eur. J. Biochem. , vol.268 , pp. 2810-2816
    • Poolman, M.G.1    Olçer, H.2    Lloyd, J.C.3    Raines, C.A.4    Fell, D.A.5
  • 37
    • 36849103164 scopus 로고
    • On symmetry breaking instabilities in dissipative systems
    • Prigogine I., Nicolis G. On symmetry breaking instabilities in dissipative systems. J. Chem. Phys. 1967, 46:3542-3550.
    • (1967) J. Chem. Phys. , vol.46 , pp. 3542-3550
    • Prigogine, I.1    Nicolis, G.2
  • 38
    • 0034064689 scopus 로고    scopus 로고
    • A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
    • Schuster S., Fell D.A., Dandekar T. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat. Biotechnol. 2000, 18:326-332.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 326-332
    • Schuster, S.1    Fell, D.A.2    Dandekar, T.3
  • 39
    • 33645809749 scopus 로고    scopus 로고
    • Turing instabilities mediated by voltage and calcium diffusion in paced cardiac cells
    • Shiferaw Y., Karma A. Turing instabilities mediated by voltage and calcium diffusion in paced cardiac cells. PNAS 2006, 103(15):5670-5675.
    • (2006) PNAS , vol.103 , Issue.15 , pp. 5670-5675
    • Shiferaw, Y.1    Karma, A.2
  • 40
    • 85194541817 scopus 로고    scopus 로고
    • ERNEST: a toolbox for chemical reaction network theory
    • Bioinformatics, btp513v1.
    • Soranzo, N., Altafini, C., 2009. ERNEST: a toolbox for chemical reaction network theory. Bioinformatics, btp513v1.
    • (2009)
    • Soranzo, N.1    Altafini, C.2
  • 41
    • 0032991130 scopus 로고    scopus 로고
    • The interaction between elevated carbon dioxide and nitrogen nutrition: the physiological and molecular background
    • Stitt M., Krapp A. The interaction between elevated carbon dioxide and nitrogen nutrition: the physiological and molecular background. Plant Cell Environ. 1999, 22:465-487.
    • (1999) Plant Cell Environ. , vol.22 , pp. 465-487
    • Stitt, M.1    Krapp, A.2
  • 42
    • 67650360968 scopus 로고    scopus 로고
    • Unlimited muultistability in multisite phosphorylation systems
    • Thomson M., Gunawardena J. Unlimited muultistability in multisite phosphorylation systems. Nature 2009, 460:274-277.
    • (2009) Nature , vol.460 , pp. 274-277
    • Thomson, M.1    Gunawardena, J.2
  • 44
    • 33646198964 scopus 로고    scopus 로고
    • Diffusion of calcium and metabolites in pancreatic islets: killing oscillations with a pitchfork
    • Tsaneva-Atanasova K., Zimliki A.L., Bertram R., Sherman A. Diffusion of calcium and metabolites in pancreatic islets: killing oscillations with a pitchfork. Biophys. J. 2006, 90:3434-3446.
    • (2006) Biophys. J. , vol.90 , pp. 3434-3446
    • Tsaneva-Atanasova, K.1    Zimliki, A.L.2    Bertram, R.3    Sherman, A.4
  • 45
    • 0037376655 scopus 로고    scopus 로고
    • Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
    • Tyson J.J., Chen K.C., Novak B. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr. Opin. Cell Biol. 2003, 15:221-231.
    • (2003) Curr. Opin. Cell Biol. , vol.15 , pp. 221-231
    • Tyson, J.J.1    Chen, K.C.2    Novak, B.3
  • 46
    • 33747856186 scopus 로고    scopus 로고
    • Metatool 5.0: fast and flexible elementary modes analysis
    • van Kamp A., Schuster S. Metatool 5.0: fast and flexible elementary modes analysis. Bioinformatics 2006, 22:1030-1931.
    • (2006) Bioinformatics , vol.22 , pp. 1030-1931
    • van Kamp, A.1    Schuster, S.2
  • 48
    • 60849136046 scopus 로고    scopus 로고
    • A simple model of the CAlvin cycle has only one physiologically feasible steady state under the same external conditions
    • Zhu X.-G., Alba R., de Sturler E. A simple model of the CAlvin cycle has only one physiologically feasible steady state under the same external conditions. Nonl. Anal. RWA 2009, 10(3):1490-1499.
    • (2009) Nonl. Anal. RWA , vol.10 , Issue.3 , pp. 1490-1499
    • Zhu, X.-G.1    Alba, R.2    de Sturler, E.3
  • 49
    • 35348928051 scopus 로고    scopus 로고
    • Optimizing the distribution of resources between enzymes of carbon metabolism can dramatically increase photosynthetic rate: a numerical simulation using an evolutionary algorithm
    • (October)
    • Zhu, X.-G., de Sturler, E., Long, S.P., 2007. Optimizing the distribution of resources between enzymes of carbon metabolism can dramatically increase photosynthetic rate: a numerical simulation using an evolutionary algorithm. Plant Physiol. 145 (October (2)), 513-526. URL http://dx.doi.org/10.1104/pp.107.103713.
    • (2007) Plant Physiol , vol.145 , Issue.2 , pp. 513-526
    • Zhu, X.-G.1    de Sturler, E.2    Long, S.P.3


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