Examining the joint effect of multiple risk factors using exposure risk profiles: Lung cancer in nonsmokers

Environmental Health Perspectives

Volumn 119, Issue 1, 2011, Pages 84-91

  Papathomas, Michail ^a,b   Molitor, John ^a   Richardson, Sylvia ^a   Riboli, Elio ^a   Vineis, Paolo ^a   Manuguerra, M ^c   Matullo, G ^c   Veglia, F ^c   Autrup, H ^c   Dunning, A M ^c   Garte, S ^c   Gormally, E ^c   Malaveille, C ^c   Guarrera, S ^c   Polidoro, S ^c   Saletta, F ^c   Peluso, M ^c   Airoldi, L ^c   Overvad, K ^c   Raaschou Nielsen, O ^c   Clavel Chapelon, F ^c   Linseisen, J ^c   Boeing, H ^c   Trichopoulos, D ^c   Kalandidi, A ^c   Palli, D ^c   Krogh, V ^c   Tumino, R ^c   Panico, S ^c   Bueno De Mesquita, H B ^c   Peeters, P H ^c   Lund, E ^c   Pera, G ^c   Martinez, C ^c   Amiano, P ^c   Barricarte, A ^c   Tormo, M J ^c   Quiros, J R ^c   Berglund, G ^c   Janzon, L ^c   Jarvholm, B ^c   Day, N E ^c   Allen, N E ^c   Saracci, R ^c   Kaaks, R ^c   Ferrari, P ^c   more..

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b Faculty of Health and Life Sciences   (United Kingdom)

^c NONE

Author keywords

Air pollutants; Bayesian inference; Clustering; Combined effect; Gene environment interactions

Indexed keywords

NITROGEN DIOXIDE;

AIR POLLUTANT; AIR POLLUTION; ARTICLE; CASE CONTROL STUDY; CONTROLLED STUDY; ENVIRONMENTAL EXPOSURE; HIGH RISK POPULATION; HUMAN; LUNG CANCER; MAJOR CLINICAL STUDY; MANUAL LABOR; PARTICULATE MATTER; PRIORITY JOURNAL; PROFILE REGRESSION; RESIDENTIAL AREA; RISK ASSESSMENT; RISK FACTOR; SMOKING; STATISTICAL ANALYSIS; TRAFFIC AND TRANSPORT;

EID: 78751516919     PISSN: 00916765     EISSN: 15529924     Source Type: Journal    
DOI: 10.1289/ehp.1002118     Document Type: Article

References (37)

1. Albert JH, Chib S. 1993. Bayesian analysis of binary and poly-chotomus response data. J Am Statist Assoc 88:669-679.
2. Bartsch H. 2000. Studies on biomarkers in cancer etiology and prevention: a summary and challenge of 20 years of interdisciplinary research. Mutat Res 462:255-279.
3. Bastone L, Reilly M, Rader DJ, Foulkes AS. 2004. MDR and PRP: a comparison of methods for high-order genotype-phenotype associations. Hum Hered 58:82-92.
4. BGX (Bayesian Gene eXpression). 2010. Bayesian Integrative Genomics. Available: http://www.bgx.org.uk/software.html [accessed 12 December 2010].
5. Beeson WL, Abbey DE, Knutsen SF. 1988. Long term concentrations of ambient air pollutants and incident lung cancer in California adults. Results from the AHSMOG study. Environ Health Perspect 106:813-823.
6. Berrington de González A, Spencer EA, Bueno-de-Mesquita HB, Roddam A, Stolzenberg-Solomon R, Halkj J, et al. 2006. Anthropometry, physical activity, and the risk of pancreatic cancer in the European Prospective Investigation into cancer and nutrition. Cancer Epidemiol Biomarkers Prev 15:879-885.
7. Bingham S, Riboli E. 2004. Diet and cancer-the European Prospective Investigation into cancer and nutrition. Nature Rev Cancer 4:206-215.
8. Carlsten C, Sagoo GS, Frodsham AM, Burke W, Higgins JP. 2008. Glutathione S-transferase M1 (GSTM1) polymorphisms and lung cancer: a literature-based systematic HuGE review and meta-analysis. Am J Epidemiol 167:759-774.
9. Cho YM, Ritchie MD, Moore JH, Park JY, Lee KU, Shin HD, et al. 2004. Multifactor dimensionality reduction shows a two-locus interaction associated with type 2 diabetes mellitus. Diabetologia 47:549-554.
10. Cowles MK. 1996. Accelerating Monte Carlo Markov chain convergence for cumulative-link generalized linear models. Stat Comp 6:101-111.
11. Desantis SM, Houseman EA, Coull BA, Stemmer-Rachamimov A, Betensky RA. 2008. A penalized latent class model for ordinal data. Biostatistics 9:249-262.
12. Dockery DW, Pope CA III, Xu X, Spengler JD, Ware JH, Fay ME, et al. 1993. An association between air pollution and mortality in six U.S. cities. N Engl J Med 329:1753-1759.
13. Foulkes AS, De Gruttola V, Hertogs K. 2004. Combining genotype groups and recursive partitioning: an application to human immunodefciency virus type 1 genetics data. Appl Statist 53:311-323.
14. Gilks W, Richardson S, Spiegelhalter D, eds. 1996. Markov Chain Monte Carlo in Practice. London:Chapman & Hall.
15. 32P-postlabelling analysis of aromatic carcinogen: DNA adducts. Cancer Res 45:5656-5662.
16. Hans LW, Ritchie MD, Moore JH. 2003. Multifactor dimensionality reduction software for detecting gene-gene and gene- environment interactions. Bioinformatics 19:376-382.
17. Hoek G, Brunekreef B, Goldbohm S, Fischer P, van den Brandt PA. 2002. Association between mortality and indicators of traffic-related air pollution in the Netherlands: a cohort study. Lancet 360:1203-1209.
18. Ishwaran H, James L. 2001. Gibbs sampling methods for stick-breaking priors. J Am Statist Assoc 96:161-173.
19. Malats N, Camus-Radon A, Nyberg F, Ahrens W, Constantinescu V, Mukeria A, et al. 2000. Lung cancer in nonsmokers and GSTM1 and GSTT1 genetic polymorphism. Cancer Epidemiol Biomarkers Prev 9:827-833.
20. Manuguerra M, Matullo G, Veglia F, Autrup H, Dunning AM, Garte S, et al. 2007. Multi-factor dimensionality reduction applied to a large prospective investigation on gene-gene and gene-environment interactions. Carcinogenesis 28:414-422.
21. Matullo G, Dunning AM, Guarrera S, Baynes C, Polidoro S, Garte S, et al. 2006. DNA repair polymorphisms and cancer risk in non-smokers in a cohort study. Carcinogenesis 27:997-1007.
22. 32P-DNA adducts in a sample of healthy subjects. Carcinogenesis 22:1437-1445.
23. MDR (Multifactor Dimensionality Reduction). 2010. Homepage of the Multifactor Dimensionality Reduction Open-Source Software from the Computational Genetics Laboratory at Dartmouth. Available: http://www.multifactordimensionalityreduction.org/ [accessed 13 December 2010].
24. Molitor J, Papathomas M, Jerrett M, Richardson S. 2010. Bayesian profle regression with an application to the National Survey of Children's Health. Biostatistics 11:484-498.
25. Patterson BH, Dayton CM, Graubard BI. 2002. Latent class analysis of complex sample survey data: application to dietary data. J Am Statist Assoc 97:721-741.
26. Peluso M, Airoldi L, Magagnotti C, Fiorini L, Munnia A, Hautefeuille A, et al. 2000. White blood cell DNA adducts and fruit and vegetable consumption in bladder cancer. Carcinogenesis 21:183-187.
27. Peluso M, Munnia A, Hoek G, Krzyzanowski M, Veglia F, Airoldi L, et al. 2005. DNA adducts and lung cancer risk: a prospective study. Cancer Res 65:8042-8048.
28. R Development Core Team. R. 2006. A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing. Available: http://www.R-project.org [accessed 8 July 2010].
29. Ritchie MD, Hahn LW, Roodi N, Bailey LR, Dupont WD, Parl FF, et al. 2001. Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am J Hum Genet 69:138-147.
30. Seaman SR, Richardson S. 2004. Equivalence of prospective and retrospective models in the Bayesian analysis of case-control studies. Biometrika 91:15-25.
31. Steindorf K, Friedenreich C, Linseisen J, Rohrmann S, Rundle A, Veglia F, et al. 2006. Physical activity and lung cancer risk in the European Prospective Investigation into Cancer and Nutrition Cohort. Int J Cancer 119:2389-2397.
32. Tibshirani R. 1996. Regression shrinkage and selection via the Lasso. J R Stat Soc Series B Stat Methodol 58:267-288.
33. Veglia F, Loft S, Matullo G, Peluso M, Munnia A, Perera F, et al. 2008. DNA adducts and cancer risk in prospective studies: a pooled analysis and a meta-analysis. Carcinogenesis 29:932-936.
34. Vineis P, Brennan P, Canzian F, Ioannidis JPA, Matullo G, Ritchie M, et al. 2008. Expectations and challenges stemming from genome-wide association studies. Mutagenesis 23:439-444.
35. Vineis P, Hoek G, Kryzanowski M, Vigna-Talianti F, Veglia F, Airoldi F, et al. 2006. Air pollution and risk of lung cancer in a prospective study in Europe. Int J Cancer 119:169-174.
36. Vineis P, Husgafvel-Pursiainen K. 2005. Air pollution and cancer: biomarker studies in human populations. Carcinogenesis 26:1846-1855.
37. Vineis P, Veglia F, Garte S, Malaveille C, Matullo G, Dunning A, et al. 2007. Genetic susceptibility according to three metabolic pathways in cancers of the lung and bladder and in myeloid leukemias in nonsmokers. Ann Oncol 18:1230-1242.