SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses

Bioinformatics

Volumn 25, Issue 4, 2009, Pages 535-536

  Barker, Michael S ^a,b   Dlugosch, Katrina M ^a   Reddy, Chaitanya C A ^a   Amyotte, Sarah N ^a   Rieseberg, Loren H ^a,b  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; CONTIG MAPPING; EXPRESSED SEQUENCE TAG; GENOME ANALYSIS; GENOMICS; INTERNET; MOLECULAR BIOLOGY; MOLECULAR EVOLUTION; POPULATION GENETICS; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

CENTAUREA; DATABASES, GENETIC; EVOLUTION, MOLECULAR; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; GENOME; GENOMICS; SOFTWARE;

EID: 60149098267     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp011     Document Type: Article

References (6)

1. Barker,M.S. et al. (2008) Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol. Biol. Evol., 25 2445-2455.
2. Chevreux,B. et al. (2004) Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res., 14, 1147-1159.
3. Margulies,M. et al. (2005) Genome sequencing in open microfabricated high density picoliter reactors. Nature, 437 376-380.
4. Pertea,G. et al. (2003) TIGR Gene Indices clustering tools (TGICL): A software system for fast clustering of large EST datasets. Bioinformatics, 19, 651-652.
5. Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
6. Zhang,Z. et al. (2000) A greedy algorithm for aligning DNA sequences. J. Comput. Biol., 7, 203-214.