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Volumn 20, Issue 6, 2010, Pages 1211-1223

A novel screening method for competitive FRET-aptamers applied to E. coli assay development

Author keywords

Aptamer; Coliform; High throughput screening; SELEX; Waterborne

Indexed keywords

APTAMERS; COLIFORM; HIGH-THROUGHPUT SCREENING; SELEX; WATERBORNE;

EID: 78651370075     PISSN: 10530509     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10895-010-0670-9     Document Type: Article
Times cited : (87)

References (32)
  • 1
    • 63449090005 scopus 로고    scopus 로고
    • Initial development of competitive FRET-aptamer assays for monitoring bone metabolism
    • JG Bruno MP Carrillo T Phillips R Crowell 2007 Initial development of competitive FRET-aptamer assays for monitoring bone metabolism J Clin Ligand Assay 30 81 89
    • (2007) J Clin Ligand Assay , vol.30 , pp. 81-89
    • Bruno, J.G.1    Carrillo, M.P.2    Phillips, T.3    Crowell, R.4
  • 2
    • 51649114079 scopus 로고    scopus 로고
    • Competitive FRET-aptamer-based detection of methylphosphonic acid: A common nerve agent metabolite
    • 1:CAS:528:DC%2BD1cXhtFegurjO 10.1007/s10895-008-0316-3 18224427
    • JG Bruno MP Carrillo T Phillips NK Vail D Hanson 2008 Competitive FRET-aptamer-based detection of methylphosphonic acid: a common nerve agent metabolite J Fluoresc 18 867 876 1:CAS:528:DC%2BD1cXhtFegurjO 10.1007/s10895-008-0316-3 18224427
    • (2008) J Fluoresc , vol.18 , pp. 867-876
    • Bruno, J.G.1    Carrillo, M.P.2    Phillips, T.3    Vail, N.K.4    Hanson, D.5
  • 3
    • 63449138532 scopus 로고    scopus 로고
    • Development of DNA aptamers to a Foot-and-Mouth Disease peptide for competitive FRET-based detection
    • JG Bruno MP Carrillo T Phillips 2008 Development of DNA aptamers to a Foot-and-Mouth Disease peptide for competitive FRET-based detection J Biomol Techn 19 109 115
    • (2008) J Biomol Techn , vol.19 , pp. 109-115
    • Bruno, J.G.1    Carrillo, M.P.2    Phillips, T.3
  • 4
    • 0035879386 scopus 로고    scopus 로고
    • Aptamer beacons for the direct detection of proteins
    • DOI 10.1006/abio.2001.5169
    • N Hamaguchi A Ellington M Stanton 2001 Aptamer beacons for the direct detection of proteins Anal Biochem 294 126 131 1:CAS:528:DC%2BD3MXkvFOrtLg%3D 10.1006/abio.2001.5169 11444807 (Pubitemid 32641757)
    • (2001) Analytical Biochemistry , vol.294 , Issue.2 , pp. 126-131
    • Hamaguchi, N.1    Ellington, A.2    Stanton, M.3
  • 5
    • 0033664254 scopus 로고    scopus 로고
    • In vitro selection of signaling aptamers
    • 1:CAS:528:DC%2BD3cXovVOntbs%3D 10.1038/82414 11101810
    • S Jhaveri M Rajendran AD Ellington 2000 In vitro selection of signaling aptamers Nat Biotechnol 18 1293 1297 1:CAS:528:DC%2BD3cXovVOntbs%3D 10.1038/82414 11101810
    • (2000) Nat Biotechnol , vol.18 , pp. 1293-1297
    • Jhaveri, S.1    Rajendran, M.2    Ellington, A.D.3
  • 6
    • 33748793979 scopus 로고    scopus 로고
    • Signaling aptamers created using fluorescent nucleotide analogues
    • DOI 10.1021/ac060859k
    • E Katilius Z Katiliene NW Woodbury 2006 Signaling aptamers created using fluorescent nucleotide analogues Anal Chem 78 6484 6489 1:CAS:528: DC%2BD28Xot12gurk%3D 10.1021/ac060859k 16970324 (Pubitemid 44413599)
    • (2006) Analytical Chemistry , vol.78 , Issue.18 , pp. 6484-6489
    • Katilius, E.1    Katiliene, Z.2    Woodbury, N.W.3
  • 7
    • 0036297293 scopus 로고    scopus 로고
    • Molecular aptamer beacons for real-time protein recognition
    • DOI 10.1006/bbrc.2002.6581
    • JJ Li X Fang W Tan 2002 Molecular aptamer beacons for real-time protein recognition Biochem Biophys Res Commun 292 31 40 1:CAS:528:DC%2BD38XhslyhtLc%3D 10.1006/bbrc.2002.6581 11890667 (Pubitemid 34687324)
    • (2002) Biochemical and Biophysical Research Communications , vol.292 , Issue.1 , pp. 31-40
    • Li, J.J.1    Fang, X.2    Tan, W.3
  • 8
    • 34249734771 scopus 로고    scopus 로고
    • Direct selection of RNA beacon aptamers
    • DOI 10.1016/j.bbrc.2007.05.072, PII S0006291X0701025X
    • DP Morse 2007 Direct selection of RNA beacon aptamers Biochem Biophys Res Commun 359 94 101 1:CAS:528:DC%2BD2sXmtFKqtbo%3D 10.1016/j.bbrc.2007.05.072 17533112 (Pubitemid 46836674)
    • (2007) Biochemical and Biophysical Research Communications , vol.359 , Issue.1 , pp. 94-101
    • Morse, D.P.1
  • 9
    • 0037462083 scopus 로고    scopus 로고
    • Structure-switching signaling aptamers
    • DOI 10.1021/ja028962o
    • R Nutin Y Li 2003 Structure switching signaling aptamers J Am Chem Soc 125 4771 4778 10.1021/ja028962o (Pubitemid 36505368)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.16 , pp. 4771-4778
    • Nutiu, R.1    Li, Y.2
  • 10
    • 0142009646 scopus 로고    scopus 로고
    • In vitro selection of molecular beacons
    • DOI 10.1093/nar/gkg764
    • M Rajendran AD Ellington 2003 In vitro selection of molecular beacons Nucleic Acid Res 31 5700 5713 1:CAS:528:DC%2BD3sXns1CntLc%3D 10.1093/nar/gkg764 14500834 (Pubitemid 37441941)
    • (2003) Nucleic Acids Research , vol.31 , Issue.19 , pp. 5700-5713
    • Rajendran, M.1    Ellington, A.D.2
  • 11
    • 0034813846 scopus 로고    scopus 로고
    • Aptamer-based folding fluorescent sensor for cocaine
    • DOI 10.1021/ja0038171
    • MN Stojanovic P de Prada DW Landry 2001 Aptamer-based folding fluorescent sensor for cocaine J Am Chem Soc 123 4928 4931 1:CAS:528:DC%2BD3MXjtFGqsro%3D 10.1021/ja0038171 11457319 (Pubitemid 32905648)
    • (2001) Journal of the American Chemical Society , vol.123 , Issue.21 , pp. 4928-4931
    • Stojanovic, M.N.1    De Prada, P.2    Landry, D.W.3
  • 12
    • 67651004485 scopus 로고    scopus 로고
    • Aptamer-mediated turn-on fluorescence assay for prion protein based on guanine quenched fluophor
    • 1:CAS:528:DC%2BD1MXptV2ls78%3D 10.1016/j.talanta.2009.05.040 19635360
    • SJ Xiao PP Hu YF Li CZ Huang T Huang GF Xiao 2009 Aptamer-mediated turn-on fluorescence assay for prion protein based on guanine quenched fluophor Talanta 79 1283 1286 1:CAS:528:DC%2BD1MXptV2ls78%3D 10.1016/j.talanta.2009.05. 040 19635360
    • (2009) Talanta , vol.79 , pp. 1283-1286
    • Xiao, S.J.1    Hu, P.P.2    Li, Y.F.3    Huang, C.Z.4    Huang, T.5    Xiao, G.F.6
  • 14
    • 0017173382 scopus 로고
    • Fluorescent excitation transfer immunoassay a general method for determination of antigens
    • 1:CAS:528:DyaE28XltVOgsbg%3D 945272
    • EF Ullman M Schwarzberg KE Rubenstein 1976 Fluorescent excitation transfer immunoassay a general method for determination of antigens J Biol Chem 251 4172 4178 1:CAS:528:DyaE28XltVOgsbg%3D 945272
    • (1976) J Biol Chem , vol.251 , pp. 4172-4178
    • Ullman, E.F.1    Schwarzberg, M.2    Rubenstein, K.E.3
  • 15
    • 0036140250 scopus 로고    scopus 로고
    • Use of magnetic beads in selection and detection of biotoxin aptamers by ECL and enzymatic methods
    • 1:CAS:528:DC%2BD38XkvFWnsQ%3D%3D 11808691
    • JG Bruno JL Kiel 2002 Use of magnetic beads in selection and detection of biotoxin aptamers by ECL and enzymatic methods Biotechniques 32 178 183 1:CAS:528:DC%2BD38XkvFWnsQ%3D%3D 11808691
    • (2002) Biotechniques , vol.32 , pp. 178-183
    • Bruno, J.G.1    Kiel, J.L.2
  • 16
    • 0032860385 scopus 로고    scopus 로고
    • Aptamers: An emerging class of molecules that rival antibodies in diagnostics
    • 1:CAS:528:DyaK1MXlvFertrk%3D 10471678
    • SD Jayasena 1999 Aptamers: an emerging class of molecules that rival antibodies in diagnostics Clin Chem 45 1628 1650 1:CAS:528:DyaK1MXlvFertrk%3D 10471678
    • (1999) Clin Chem , vol.45 , pp. 1628-1650
    • Jayasena, S.D.1
  • 17
    • 13444255987 scopus 로고    scopus 로고
    • Incorporation of reporter-labeled nucleotides by DNA polymerases
    • 1:CAS:528:DC%2BD2MXhsFeksrw%3D 10.2144/05382RR02 15727132
    • JP Anderson B Angerer LA Loeb 2005 Incorporation of reporter-labeled nucleotides by DNA polymerases Biotechniques 38 257 264 1:CAS:528: DC%2BD2MXhsFeksrw%3D 10.2144/05382RR02 15727132
    • (2005) Biotechniques , vol.38 , pp. 257-264
    • Anderson, J.P.1    Angerer, B.2    Loeb, L.A.3
  • 18
    • 66149087064 scopus 로고    scopus 로고
    • DNA aptamers developed against a soman derivative cross-react with methylphosphonic acid but not with the flanking hydrophobic groups
    • 1:CAS:528:DC%2BD1MXltFSjsb0%3D 10.1002/jmr.932 19051203
    • JG Bruno MP Carrillo CL Cadieux DL Lenz DM Cerasoli T Phillips 2009 DNA aptamers developed against a soman derivative cross-react with methylphosphonic acid but not with the flanking hydrophobic groups J Mol Recognit 22 197 204 1:CAS:528:DC%2BD1MXltFSjsb0%3D 10.1002/jmr.932 19051203
    • (2009) J Mol Recognit , vol.22 , pp. 197-204
    • Bruno, J.G.1    Carrillo, M.P.2    Cadieux, C.L.3    Lenz, D.L.4    Cerasoli, D.M.5    Phillips, T.6
  • 19
    • 67349285960 scopus 로고    scopus 로고
    • Plastic-adherent DNA aptamer-magnetic bead and quantum dot sandwich assay for Campylobacter detection
    • 1:CAS:528:DC%2BD1MXmsVOkt7s%3D 10.1007/s10895-008-0429-8 19052851
    • JG Bruno T Phillips MP Carrillo R Crowell 2009 Plastic-adherent DNA aptamer-magnetic bead and quantum dot sandwich assay for Campylobacter detection J Fluoresc 19 427 435 1:CAS:528:DC%2BD1MXmsVOkt7s%3D 10.1007/s10895-008-0429-8 19052851
    • (2009) J Fluoresc , vol.19 , pp. 427-435
    • Bruno, J.G.1    Phillips, T.2    Carrillo, M.P.3    Crowell, R.4
  • 20
    • 50149105307 scopus 로고    scopus 로고
    • Development of DNA aptamers for cytochemical detection of acetylcholine
    • 1:CAS:528:DC%2BD1cXmtFKqs7s%3D
    • JG Bruno MP Carrillo T Phillips B King 2008 Development of DNA aptamers for cytochemical detection of acetylcholine. In Vitro Cell Develop Biol - Animal 44 63 72 1:CAS:528:DC%2BD1cXmtFKqs7s%3D
    • (2008) Vitro Cell Develop Biol - Animal , vol.44 , pp. 63-72
    • Bruno, J.G.1    Carrillo, M.P.2    Phillips, T.3    King, B.4
  • 22
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • DOI 10.1093/nar/gkg599
    • IL Hofacker 2003 Vienna RNA secondary structure server Nucleic Acids Res 31 3429 3431 1:CAS:528:DC%2BD3sXltVWisrs%3D 10.1093/nar/gkg599 12824340 (Pubitemid 37442172)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3429-3431
    • Hofacker, I.L.1
  • 23
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest- neighbor thermodynamics
    • DOI 10.1073/pnas.95.4.1460
    • J SantaLucia 1998 A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics Proc Natl Acad Sci USA 95 1460 146 1:CAS:528:DyaK1cXht1Wqsbc%3D 10.1073/pnas.95.4.1460 9465037 (Pubitemid 28103414)
    • (1998) Proceedings of the National Academy of Sciences of the United States of America , vol.95 , Issue.4 , pp. 1460-1465
    • Santalucia Jr., J.1
  • 24
    • 33646865450 scopus 로고    scopus 로고
    • Anti-Francisella tularensis DNA aptamers detect tularemia antigen from different subspecies by aptamer-linked immobilized sorbent assay
    • 1:CAS:528:DC%2BD28Xkslemu7o%3D 16550191
    • J Vivekananda JL Kiel 2006 Anti-Francisella tularensis DNA aptamers detect tularemia antigen from different subspecies by aptamer-linked immobilized sorbent assay Lab Invest 86 610 618 1:CAS:528:DC%2BD28Xkslemu7o%3D 16550191
    • (2006) Lab Invest , vol.86 , pp. 610-618
    • Vivekananda, J.1    Kiel, J.L.2
  • 25
    • 0036154084 scopus 로고    scopus 로고
    • Marine bacteria cause false-positive results in the Colilert-18 rapid identification test for Escherichia coli in Florida waters
    • DOI 10.1128/AEM.68.2.539-544.2002
    • JM Pisciotta DF Rath PA Stanek DM Flanery VJ Harwood 2002 Marine bacteria cause false-positive results in the Colilert-18 rapid identification test for Escherichia coli in Florida waters Appl Environ Microbiol 68 539 544 1:CAS:528:DC%2BD38XhtV2gurc%3D 10.1128/AEM.68.2.539-544.2002 11823188 (Pubitemid 34113038)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.2 , pp. 539-544
    • Pisciotta, J.M.1    Rath, D.F.2    Stanek, P.A.3    Flanery, D.M.4    Harwood, V.J.5
  • 26
    • 49449104355 scopus 로고    scopus 로고
    • Rapid ultrafiltration concentration and biosensor detection of enterococci from large volumes of Florida recreational water
    • 1:CAS:528:DC%2BD1cXpslKkt7Y%3D 10.1128/AEM.00052-08 18515479
    • SD Leskinen DV Lim 2008 Rapid ultrafiltration concentration and biosensor detection of enterococci from large volumes of Florida recreational water Appl Environ Microbiol 74 4792 4798 1:CAS:528:DC%2BD1cXpslKkt7Y%3D 10.1128/AEM.00052-08 18515479
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4792-4798
    • Leskinen, S.D.1    Lim, D.V.2
  • 27
    • 39449122250 scopus 로고    scopus 로고
    • Detection and titer estimation of Escherichia coli using aptamer-functionalized single-walled carbon-nanotube field-effect transistors
    • DOI 10.1002/smll.200700664
    • HM So DW Park EK Jeon YH Kim BS Kim CK Lee SY Choi SC Kim H Chang JO Lee 2008 Detection and titer estimation of Escherichia coli using aptamer-functionalized single-walled carbon-nanotube field-effect transistors Small 4 197 201 1:CAS:528:DC%2BD1cXisFSksrg%3D 10.1002/smll.200700664 18214875 (Pubitemid 351271150)
    • (2008) Small , vol.4 , Issue.2 , pp. 197-201
    • So, H.-M.1    Park, D.-W.2    Jeon, E.-K.3    Kim, Y.-H.4    Kim, B.S.5    Lee, C.-K.6    Choi, S.Y.7    Kim, S.C.8    Chang, H.9    Lee, J.-O.10
  • 28
    • 67650021765 scopus 로고    scopus 로고
    • A sensitive method to detect Escherichia coli based on immunomagnetic separation and real-time PCR amplification of aptamers
    • 1:CAS:528:DC%2BD1MXoslaiu70%3D 10.1016/j.bios.2009.05.010 19505816
    • HJ Lee BC Kim KW Kim YK Kim J Kim MK Oh 2009 A sensitive method to detect Escherichia coli based on immunomagnetic separation and real-time PCR amplification of aptamers Biosens Bioelectron 24 3550 3555 1:CAS:528: DC%2BD1MXoslaiu70%3D 10.1016/j.bios.2009.05.010 19505816
    • (2009) Biosens Bioelectron , vol.24 , pp. 3550-3555
    • Lee, H.J.1    Kim, B.C.2    Kim, K.W.3    Kim, Y.K.4    Kim, J.5    Oh, M.K.6
  • 29
    • 54349093522 scopus 로고    scopus 로고
    • Selection of aptamers against live bacterial cells
    • 1:CAS:528:DC%2BD1cXhtFeltrfE 10.1021/ac801272s 18803393
    • CL Hamula H Zhang LL Guan XF Li XC Le 2008 Selection of aptamers against live bacterial cells Anal Chem 80 7812 7819 1:CAS:528:DC%2BD1cXhtFeltrfE 10.1021/ac801272s 18803393
    • (2008) Anal Chem , vol.80 , pp. 7812-7819
    • Hamula, C.L.1    Zhang, H.2    Guan, L.L.3    Li, X.F.4    Le, X.C.5
  • 31
    • 59049089355 scopus 로고    scopus 로고
    • Senthil Kumar TM, Jaykus LA, Schefers J, Sreevatsan S (2009) Selection, characterization, and application of DNA aptamers for the capture and detection of Salmonella enterica serovars
    • 1:CAS:528:DC%2BD1MXhs1artrs%3D 10.1016/j.mcp.2008.10.006 19049862
    • R Joshi H Janagama HP Dwivedi 2009 Senthil Kumar TM, Jaykus LA, Schefers J, Sreevatsan S (2009) Selection, characterization, and application of DNA aptamers for the capture and detection of Salmonella enterica serovars Mol Cell Probes 23 20 28 1:CAS:528:DC%2BD1MXhs1artrs%3D 10.1016/j.mcp.2008.10.006 19049862
    • (2009) Mol Cell Probes , vol.23 , pp. 20-28
    • Joshi, R.1    Janagama, H.2    Dwivedi, H.P.3
  • 32
    • 69049105481 scopus 로고    scopus 로고
    • Combining use of a panel of ssDNA aptamers in the detection of Staphylococcus aureus
    • 1:CAS:528:DC%2BD1MXhtVWitLbM 10.1093/nar/gkp489 19498077
    • X Cao S Li L Chen H Ding H Xu Y Huang J Li N Liu W Cao Y Zhu B Shen N Shao 2009 Combining use of a panel of ssDNA aptamers in the detection of Staphylococcus aureus Nucleic Acids Res 37 4621 4628 1:CAS:528: DC%2BD1MXhtVWitLbM 10.1093/nar/gkp489 19498077
    • (2009) Nucleic Acids Res , vol.37 , pp. 4621-4628
    • Cao, X.1    Li, S.2    Chen, L.3    Ding, H.4    Xu, H.5    Huang, Y.6    Li, J.7    Liu, N.8    Cao, W.9    Zhu, Y.10    Shen, B.11    Shao, N.12


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