Development of DNA aptamers to a foot-and-mouth disease peptide for competitive FRET-based detection

Journal of Biomolecular Techniques

Volumn 19, Issue 2, 2008, Pages 109-115

  Bruno, John G ^a   Carrillo, Maria P ^a   Phillips, Taylor ^a  

^a Operational Technologies Corporation   (United States)

Author keywords

Agrobioterrorism; Aptamer; Fluorescence resonance energy transfer; Foot and mouth disease; SELEX

Indexed keywords

APTAMER; CAPSID PROTEIN; VIRUS DNA; VP1 PROTEIN, FOOT AND MOUTH DISEASE VIRUS; VP1 PROTEIN, FOOT-AND-MOUTH DISEASE VIRUS;

ANIMAL; ANIMAL DISEASE; ARTICLE; BIOTECHNOLOGY; COMBINATORIAL CHEMISTRY; EPIDEMIC; ESCHERICHIA COLI; EVALUATION; FLUORESCENCE RESONANCE ENERGY TRANSFER; FOOT AND MOUTH DISEASE; FOOT AND MOUTH DISEASE VIRUS; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SPECTROFLUOROMETRY; VIROLOGY;

ANIMALS; APTAMERS, NUCLEOTIDE; BASE SEQUENCE; BIOTECHNOLOGY; CAPSID PROTEINS; CLONING, MOLECULAR; DISEASE OUTBREAKS; DNA, VIRAL; ESCHERICHIA COLI; FLUORESCENCE RESONANCE ENERGY TRANSFER; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; SELEX APTAMER TECHNIQUE; SPECTROMETRY, FLUORESCENCE;

EID: 63449138532     PISSN: 15240215     EISSN: 19434731     Source Type: Journal    
DOI: None     Document Type: Article

References (21)

1. Carpenter TE, Thurmond MC, Bates TW. A simulation model of intraherd transmission of foot and mouth disease with reference to disease spread before and after clinical diagnosis. J Vet Diagn Invest 2004;16:11-16.
2. Grubman MJ, Baxt B. Foot-and-mouth disease. Clin Microbiol Rev 2004;17:465-493.
3. Oem JK, Lee KN, Cho IS, et al. Identification and antigenic site analysis of foot-and-mouth disease virus from pigs and cattle in Korea. J Vet Sci 2005;6:117-124.
4. Bronsvoort BMC, Sorensen KJ, Anderson J, et al. Comparison of two 3ABC enzyme-linked immunosorbent assays for diagnosis of multiple-serotype foot-and-mouth disease in a cattle population in an area of endemicity. J Clin Microbiol 2004;42:2108-2114.
5. Callahan JD, Brown F, Osorio FA, et al. Use of a portable real-time reverse transcriptase-polymerase chain reaction assay for rapid detection of foot-and-mouth disease virus. J Am Vet Med Assoc 2002;220:1636-1642.
6. Collins RA, Ko LS, Fung KY, et al. A method to detect major serotypes of foot-and-mouth disease virus. Biochem Biophys Res Comm 2002;297:267-274.
7. Shaw AE, Reid SM, Ebert K, et al. Implementation of a one-step real-time RT-PCR protocol for diagnosis of foot-and-mouth disease. J Virol Methods 2007;143:81-85.
8. Dwarakanath S, Satyanarayana S, Bruno JG, et al. Ultrasensitive fluorescent nanoparticle-based binding assays for food-borne and waterborne pathogens of clinical interest. J Clin Ligand Assay 2006;29:136-142.
9. Faulstitch K, Gruler R, Eberhard M, et al. Developing rapid mobile POC systems, part 1: devices and applications for lateral-flow immunodiagnostics. IVD Technol 2007;13:47-53.
10. Hoile R, Yuen M, James G, et al. Evaluation of the rapid analyte measurement platform (RAMP) for the detection of Bacillus anthracis at a crime scene. Forensic Sci Int 2007;171:1-4.
11. Jhaveri S, Rajendran M, Ellington A. In vitro selection of signaling aptamers. Nature Biotechnol 2000;18:1293-1297.
12. Hamaguchi N, Ellington A, Stanton M. Aptamer beacons for the direct detection of proteins. Anal Biochem 2001;294:126-131.
13. Bruno JG, Ulvick SJ, Uzzell GL, et al. Novel immuno-FRET assay method for Bacillus spores and E. coli O157:H7. Biochem Biophys Res Comm 2001;287: 875-880.
14. Bruno JG, Kiel JL. Use of magnetic beads in selection and detection of biotoxin aptamers by ECL and enzymatic methods. Biotechniques 2002;32:178-183.
15. 20-Fold aptamer library amplification without gel purification. Nucleic Acids Res 1993;21:4410.
16. Anderson JP, Angerer B, Loeb LA. Incorporation of reporter-labeled nucleotides by DNA polymerases. Biotechniques 2005;38:257-264.
17. Lacenere CJ, Garg NK, Stotlz BM. Effects of a modified dye-labeled nucleotide spacer arm on incorporation by thermophilic DNA polymerases. Nucleosides Nucleotides and Nucleic Acids 2005;25:9-15.
18. Coen DM. The polymerase chain reaction. In: Ausbel FM, Brent R, Kingston RE, et al. eds. Short Protocols in Molecular Biology, 2nd ed. New York, NY: John Wiley; 1992:155-156.
19. Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res 2003;31: 3429-3431.
20. SantaLucia J. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci USA 1998;95:1460-1465.
21. Bruno JG, Carrillo MP, Phillips T, et al. Competitive FRET-aptamer-based detection of methylphosphonic acid: a common nerve agent metabolite. J Fluoresc 2008:25-27