Opposing structural changes in two symmetrical polypeptides bring about opposing changes to the thermal stability of a complex integral membrane protein

Archives of Biochemistry and Biophysics

Volumn 505, Issue 2, 2011, Pages 160-170

  Holden Dye, Katherine ^a   Crouch, Lucy I ^a   Williams, Christopher M ^a   Bone, Robert A ^a   Cheng, Jade ^a   Böhles, Felix ^b   Heathcote, Peter ^b   Jones, Michael R ^a  

^a UNIVERSITY OF BRISTOL   (United Kingdom)

^b QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

Hydrogen bond; Membrane protein; Reaction center; Thermal stability

Indexed keywords

ASPARAGINE; BACTERIOCHLOROPHYLL A; BACTERIOPHEOPHYTIN; CAROTENOID; HISTIDINE; INTEGRAL MEMBRANE PROTEIN; IRON; L POLYPEPTIDE; M POLYPEPTIDE; MEMBRANE PROTEIN; PHENYLALANINE; POLYPEPTIDE; UBIQUINONE DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; CRYSTAL STRUCTURE; HYDROGEN BOND; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN STRUCTURE; RHODOBACTER SPHAEROIDES; SITE DIRECTED MUTAGENESIS; THERMOSTABILITY; X RAY CRYSTALLOGRAPHY;

COENZYMES; ENZYME STABILITY; HYDROGEN BONDING; KINETICS; MEMBRANE PROTEINS; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; MUTATION; PEPTIDES; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PROTEIN CONFORMATION; PROTEIN ENGINEERING; PROTEIN UNFOLDING; RHODOBACTER SPHAEROIDES; TEMPERATURE;

BACTERIA (MICROORGANISMS); RHODOBACTER SPHAEROIDES;

EID: 78651240620     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2010.09.029     Document Type: Article

References (72)

1. G. von Heijne J. Intern. Med. 261 2007 543 557
2. A. Krogh, B. Larsson, G. von Heijne, and E.L.L. Sonnhammer J. Mol. Biol. 305 2001 567 580
3. R.F.S. Walters, and W.F. DeGrado Proc. Natl. Acad. Sci. USA 103 2006 13658 13663
4. J. Drews Science 287 2000 1960 1964
5. J.P. Overington, B. Al-Lazikani, and A.L. Hopkins Nat. Rev. Drug Discov. 5 2006 993 996
6. A.L. Hopkins, and C.R. Groom Nat. Rev. Drug Discov. 1 2002 727 730
7. H.M. Keizer, B.R. Dorvel, M. Andersson, D. Fine, R.B. Price, J.R. Long, A. Dodabalapur, I. Koper, W. Knoll, P.A.V. Anderson, and R.S. Duran ChemBioChem 8 2007 1246 1250
8. E. Reimhult, and K. Kumar Trends Biotechnol. 26 2008 82 89
9. H. Bayley, and L. Jayasinghe Mol. Membr. Biol. 21 2004 209 220
10. J.R. Hillebrecht, K.J. Wise, J.F. Koscielecki, and R.R. Birge Methods Enzymol. 388 2004 333 347
11. C. Nakamura, M. Hasegawa, N. Nakamura, and J. Miyake Biosens. Bioelectron. 18 2003 599 603
12. Y. Andreu, F. Baldini, A. Giannetti, and A. Mencaglia Talanta 65 2005 586 592
13. A. Mallardi, M. Giustini, F. Lopez, M. Dezi, G. Venturoli, and G. Palazzo J. Phys. Chem. B 111 2007 3304 3314
14. M.T. Giardi, and E. Pace Trends Biotechnol. 23 2005 257 263
15. N. Lebedev, S.A. Trammell, A. Spano, E. Lukashev, I. Griva, and J. Schnur J. Am. Chem. Soc. 128 2006 12044 12045
16. I. Carmeli, L. Frolov, C. Carmeli, and S. Richter J. Am. Chem. Soc. 129 2007 12352 12353
17. Y.D. Lu, J.J. Xu, B.H. Liu, and J.L. Kong Biosens. Bioelectron. 22 2007 1173 1185
18. S.A. Trammell, I. Griva, A. Spano, S. Tsoi, L.M. Tender, J. Schnur, and N. Lebedev J. Phys. Chem. C 111 2007 17122 17130
19. T. Haltia, and E. Freire BBA-Bioenergetics 1228 1995 1 27
20. C.A.S.A. Minetti, and D.P. Remeta Arch. Biochem. Biophys. 453 2006 32 53
21. S.H. White, and W.C. Wimley Annu. Rev. Biophys. Biomol. 28 1999 319 365
22. J.L. Popot, and D.M. Engelman Annu. Rev. Biochem. 69 2000 881 922
23. A.M. Stanley, and K.G. Fleming Arch. Biochem. Biophys. 469 2008 46 66
24. K.R. MacKenzie Chem. Rev. 106 2006 1931 1977
25. S. Kumar, and R. Nussinov Cell. Mol. Life Sci. 58 2001 1216 1233
26. C. Vieille, and G.J. Zeikus Microbiol. Mol. Biol. Rev. 65 2001 1 43
27. M. Sadeghi, H. Naderi-Manesh, M. Zarrabi, and B. Ranjbar Biophys. Chem. 119 2006 256 270
28. M. Beeby, B.D. O'Connor, C. Ryttersgaard, D.R. Boutz, L.J. Perry, and T.O. Yeates PLoS Biol. 3 2005 1549 1558
29. S. Chakravarty, and R. Varadarajan Biochemistry 41 2002 8152 8161
30. R. Jaenicke, and G. Bohm Curr. Opin. Struc. Biol. 8 1998 738 748
31. G.A. Petsko Methods Enzymol. 334 2001 469 478
32. G. Feher, J.P. Allen, M.Y. Okamura, and D.C. Rees Nature 339 1989 111 116
33. C.H. Chang, O. El-Kabbani, D. Tiede, J. Norris, and M. Schiffer Biochemistry 30 1991 5352 5360
34. U. Ermler, G. Fritzsch, S.K. Buchanan, and H. Michel Structure 2 1994 925 936
35. C.D. Heyes, and M.A. El-Sayed J. Phys. Chem. B 107 2003 12045 12053
36. A.V. Hughes, P. Rees, P. Heathcote, and M.R. Jones Biophys. J. 90 2006 4155 4166
37. M.R. Jones, G.J.S. Fowler, L.C.D. Gibson, G.G. Grief, J.D. Olsen, W. Crielaard, and C.N. Hunter Mol. Microbiol. 6 1992 1173 1184
38. M.R. Jones, R.W. Visschers, R. van Grondelle, and C.N. Hunter Biochemistry 31 1992 4458 4465
39. A.J. Watson, P.K. Fyfe, D. Frolov, M.C. Wakeham, E. Nabedryk, R. van Grondelle, J. Breton, and M.R. Jones BBA-Bioenergetics 1710 2005 34 46
40. A.J. Watson, A.V. Hughes, P.K. Fyfe, M.C. Wakeham, K. Holden-Dye, P. Heathcote, and M.R. Jones Photosynth. Res. 86 2005 81 100
41. P.K. Fyfe, J.A. Potter, J. Cheng, C.M. Williams, A.J. Watson, and M.R. Jones Biochemistry 46 2007 10461 10472
42. D. Spiedel, A.W. Roszak, K. McKendrick, K.E. McAuley, P.K. Fyfe, E. Nabedryk, J. Breton, B. Robert, R.J. Cogdell, N.W. Isaacs, and M.R. Jones BBA-Bioenergetics 1554 2002 75 93
43. J.P. Ridge, P.K. Fyfe, K.E. McAuley, M.E. Van Brederode, B. Robert, R. Van Grondelle, N.W. Isaacs, R.J. Cogdell, and M.R. Jones Biochem. J. 351 2000 567 578
44. M.R. Jones, M. Heer-Dawson, T. Mattioli, C.N. Hunter, and B. Robert FEBS Lett. 339 1994 18 24
45. K.E. McAuley-Hecht, P.K. Fyfe, J.P. Ridge, S.M. Prince, C.N. Hunter, N.W. Isaacs, R.J. Cogdell, and M.R. Jones Biochemistry 37 1998 4740 4750
46. W.L. DeLano The PyMOL Molecular Graphics System 2002 DeLano Scientific San Carlos, CA, USA
47. A. Tiwari, and S.K. Panigrahi In Silico Biol. 7 2007 651 661
48. K. Holden-Dye, Biophysical studies of photosynthetic membrane proteins from Rhodobacter sphaeroides. Ph.D. Thesis (2007) University of Bristol.
49. J.P. Ridge, M.E. van Brederode, M.G. Goodwin, R. van Grondelle, and M.R. Jones Photosynth. Res. 59 1999 9 26
50. K.E. McAuley, P.K. Fyfe, J.P. Ridge, R.J. Cogdell, N.W. Isaacs, and M.R. Jones Biochemistry 39 2000 15032 15043
51. C. Kirmaier, D. Gaul, R. Debey, D. Holten, and C.C. Schenck Science 251 1991 922 927
52. B.A. Heller, D. Holten, and C. Kirmaier Science 269 1995 940 945
53. T.A. Mattioli, J.C. Williams, J.P. Allen, and B. Robert Biochemistry 33 1994 1636 1643
54. H.A. Murchison, R.G. Alden, J.P. Allen, J.M. Peloquin, A.K.W. Taguchi, N.W. Woodbury, and J.C. Williams Biochemistry 32 1993 3498 3505
55. T.A. Mattioli, X. Lin, J.P. Allen, and J.C. Williams Biochemistry 34 1995 6142 6152
56. M. Thielges, G. Uyeda, A. Camara-Artigas, L. Kalman, J.C. Williams, and J.P. Allen Biochemistry 44 2005 7389 7394
57. D. Spiedel, M.R. Jones, and B. Robert FEBS Lett. 527 2002 171 175
58. J.C. Williams, R.G. Alden, H.A. Murchison, J.M. Peloquin, N.W. Woodbury, and J.P. Allen Biochemistry 31 1992 11029 11037
59. A. Ivancich, T.A. Mattioli, K. Artz, S.J. Wang, J.P. Allen, and J.C. Williams Biochemistry 36 1997 3027 3036
60. J.U. Bowie Curr. Opin. Struct. Biol. 11 2001 397 402
61. Y.F. Zhou, and J.U. Bowie J. Biol. Chem. 275 2000 6975 6979
62. S. Faham, D. Yang, E. Bare, S. Yohannan, J.P. Whitelegge, and J.U. Bowie J. Mol. Biol. 335 2004 297 305
63. G.F. Xie, A.K. Gross, and D.D. Oprian Biochemistry 42 2003 1995 2001
64. J. Standfuss, G.F. Xie, P.C. Edwards, M. Burghammer, D.D. Oprian, and G.F.X. Schertler J. Mol. Biol. 372 2007 1179 1188
65. M.J. Serrano-Vega, F. Magnani, Y. Shibata, and C.G. Tate Proc. Natl. Acad. Sci. USA 105 2008 877 882
66. F. Magnani, Y. Shibata, M.J. Serrano-Vega, and C.G. Tate Proc. Natl. Acad. Sci. USA 105 2008 10744 10749
67. Y. Shibata, J.F. White, M.J. Serrano-Vega, F. Magnani, A.L. Aloia, R. Grisshammer, and C.G. Tate J. Mol. Biol. 390 2009 262 277
68. C.B. Roth, M.A. Hanson, and R.C. Stevens J. Mol. Biol. 376 2008 1305 1319
69. T. Warne, M.J. Serrano-Vega, J.G. Baker, R. Moukhametzianov, P.C. Edwards, R. Henderson, A.G.W. Leslie, C.G. Tate, and G.F.X. Schertler Nature 454 2008 486 491
70. F.W. Lau, S. Nauli, Y.F. Zhou, and J.U. Bowie J. Mol. Biol. 290 1999 559 564
71. K.P. Howard, J.D. Lear, and W.F. DeGrado Proc. Natl. Acad. Sci. USA 99 2002 8568 8572
72. J.P. Allen, and J.C. Williams J. Bioenerg. Biomembr. 27 1995 275 283