Backbone dynamics of deoxy and carbonmonoxy hemoglobin by NMR/SRLS

Journal of Physical Chemistry B

Volumn 115, Issue 1, 2011, Pages 143-157

  Meirovitch, Eva ^a   Zerbetto, Mirco ^b   Polimeno, Antonino ^b   Freed, Jack H ^c  

^a BAR ILAN UNIVERSITY   (Israel)

^b UNIVERSITY OF PADOVA   (Italy)

^c Baker Laboratory of Chemistry and Chemical Biology Co'Nell University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDES; HEMOGLOBIN;

BACKBONE DYNAMICS; CARBONMONOXY HEMOGLOBIN; DATA FITTINGS; DIFFUSION TENSOR; EXPERIMENTAL DATA; FIT PARAMETERS; H-BONDS; LOCAL MOTIONS; LOCAL ORDERING; LOCAL STRUCTURE; POTENTIAL COEFFICIENT; PRINCIPAL AXIS; SECONDARY STRUCTURE ELEMENTS; SPIN RELAXATION; TEMPERATURE RANGE;

TENSORS;

EID: 78651239249     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp107553j     Document Type: Article

References (77)

1. Ishima, R.; Torchia, D. A. Nat. Struct. Biol. 2000, 7, 740
2. Case, D. A. Acc. Chem. Res. 2002, 35, 325
3. Brüschweiler, R. Curr. Opin. Struct. Biol. 2003, 13, 175
4. Palmer, A. G. Chem. Rev. 2004, 104, 3623
5. Mittermaier, A.; Kay, L. E. Science 2006, 312, 224
6. Igumenova, T. I.; Frederick, K. K.; Wand, A. J. Chem. Rev. 2006, 106, 1672
7. Kitao, A.; Wagner, G. Magn. Reson. Chem. 2006, 44, S130
8. Jarymowycz, V. A.; Stone, M. J. Chem. Rev. 2006, 106, 1624
9. Nodet, G.; Abergel, D. Eur. Biophys. J. Biophys. Lett. 2007, 36, 985
10. Markwick, P. R. L.; Malliavin, T.; Nilges, M. PLoS Comput. Biol. 2008, 4, 1
11. Muhandiram, D. R.; Yamazaki, T.; Sykes, B. D.; Kay, L. E. J. Am. Chem. Soc. 1995, 117, 11536
12. Millet, O.; Muhandiram, D. R.; Skrynnikov, N. R.; Kay, L. E. J. Am. Chem. Soc. 2002, 124, 6439
13. Srynnikov, N. R.; Millet, O.; Kay, L. E. J. Am. Chem. Soc. 2002, 124, 6449
14. Polimeno, A.; Freed, J. H. Adv. Chem. Phys. 1993, 83, 89
15. Polimeno, A.; Freed, J. H. J. Phys. Chem. 1995, 99, 10995
16. Liang, Z.; Freed, J. H. J. Phys. Chem. B 1999, 103, 6384
17. Tugarinov, V.; Liang, Z.; Shapiro, Yu. E.; Freed, J. H.; Meirovitch, E. J. Am. Chem. Soc. 2001, 123, 3055
18. Meirovitch, E.; Shapiro, Yu. E.; Polimeno, A.; Freed, J. H. J. Phys. Chem. A 2006, 110, 8366
19. Meirovitch, E.; Shapiro, Yu. E.; Polimeno, A.; Freed, J. H. Prog. NMR Spectrosc 2010, 56, 360
20. Song, X.-J.; Yuan, Y.; Simpliceanu, V.; Sahu, S. C.; Ho, N. Y.; Ho, C. Biochemistry 2007, 46, 6795
21. Dickerson, R. E.; Geis, I. Hemoglobin: structure, function, evolution, and pathology; Benjamin-Cummings: Menlo Park, CA, 1983.
22. Perutz, M. F. Nature 1970, 228, 726
23. Silva, M. M.; Rogers, P. H. J. Biol. Chem. 1992, 267, 17248
24. Safo, M. K.; Abraham, D. J. Biochemistry 2005, 44, 8347
25. Kavanaugh, J. S.; Rogers, P. H.; Arnone, A. Biochemistry 2005, 44, 6101
26. Lukin, J. A.; Kontaxis, G.; Simpliceanu, V.; Yuan, Y.; Bax, A.; Ho, C. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 517
27. Simpliceanu, V.; Lukin, J. A.; Fang, T.-Y.; Zou, M.; Hi, N. T.; Ho, C. Biophys. J. 2000, 79, 1146
28. Sahu, S. C.; Simpliceanu, V.; Gong, Q.; Ho, N. T.; Glushka, J. G.; Prestegard, J' H.; Ho, C. J. Am. Chem. Soc. 2006, 128, 6290
29. Sahu, S. C.; Simpliceanu, V.; Ho, N. T.; Giovanelli, J. L.; Ho, C. J. Biomol. NMR 2006, 36, 1
30. Mihailesscu, M.-R.; Russu, I. M. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 3773
31. Chang, C.-K.; Simpliceanu, V.; Ho, C. Biochemistry 2002, 41, 5644
32. Balakrishnan, G.; Tsai, C.-H.; Wu, Q.; Case, M. A.; Pevsner, A.; McLendon, G. L.; Ho, C.; Spiro, T. G. J. Mol. Biol. 2004, 340, 857
33. Yuan, Y.; Simpliceanu, V.; Lukin, J. A.; Ho, C. J. Mol. Biol. 2002, 321, 863
34. Sing, X.-J.; Simpliceanu, V.; Ho, N. T.; Ho, C. Biochemistry 2008, 47, 4907
35. Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4546
36. Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4559
37. Clore, G. M.; Szabo, A.; Bax, A.; Kay, L. E.; Driscoll, P. C.; Gronenborn, A. M. J. Am. Chem. Soc. 1990, 112, 4989
38. Mandel, A. M.; Akke, M.; Palmer III, A. G. J. Mol. Biol. 1995, 246, 144
39. Bremi, T.; Bruschweiler, R. J. Am. Chem. Soc. 1997, 119, 6672
40. Fadel, A. R.; Jin, D. Q.; Montelione, G. T.; Levy, R. M. J. Biomol. NMR 1995, 6, 221
41. Clore, G. M.; Schwieters, C. D. Biochemistry 2004, 43, 10678
42. Ulmer, T. S.; Ramirez, B. E.; Delaglio, F.; Bax, A. J. Am. Chem. Soc. 2003, 125, 9179
43. Mannfors, B. E.; Mirkin, N. J.; Palmo, K.; Krimm, S. J. Phys. Chem. A 2003, 107, 1825
44. Abergel, D.; Bodenhausen, G. J. Chem. Phys. 2004, 121, 761
45. Shapiro, Yu. E.; Kahana, E.; Tugarinov, V.; Liang, Z.; Freed, J. H.; Meirovitch, E. Biochemistry 2002, 41, 6271
46. Tugarinov, V.; Shapiro, Yu. E.; Liang, Z.; Freed, J. H.; Meirovitch, E. J. Mol. Biol. 2002, 315, 171
47. Meirovitch, E.; Shapiro, Yu. E.; Tugarinov, V.; Liang, Z.; Freed, J. '. J. Phys. Chem. B 2003, 107, 9883
48. Shapiro, Yu. E.; Meirovitch, E. J. Phys. Chem. B 2006, 110, 11519
49. Shapiro, Yu. E.; Kahana, E.; Meirovitch, E. J. Phys. Chem. B 2009, 113, 12050
50. Zerbetto, M.; Polimeno, A.; Meirovitch, E. J. Phys. Chem. B 2009, 113, 13613
51. Sezer, D.; Freed, J. H.; Roux, B. J. Chem. Phys. 2008, 128, 5106
52. Sezer, D.; Freed, J. H.; Roux, B. J. Phys. Chem. B 2008, 112, 11014
53. Sezer, D.; Freed, J. H.; Roux, B. J. Phys. Chem. B 2008, 112, 5755
54. Sezer, D.; Freed, J. H.; Roux, B. J. Am. Chem. Soc. 2009, 131, 2597
55. Zerbetto, M.; Carlotto, S.; Polimeno, A.; Corvaja, C.; Franco, J.; Toniolo, C.; Formaggio, F.; Barone, V.; Cimino, P. J. Phys. Chem. B 2007, 111, 2668
56. Carlotto, S.; Cimino, P.; Zerbetto, M.; Franco, L.; Corvaja, C.; Crisma, M.; Formaggio, F.; Toniolo, C.; Polimeno, A.; Barone, V. J. Am. Chem. Soc. 2007, 129, 11248
57. Barone, V.; Polimeno, A. Chem. Soc. Rev. 2007, 36, 1724
58. Barone, V.; Polimeno, A. Phys. Chem. Chem. Phys. 2006, 8, 4609
59. Barone, V.; Brustolon, M.; Cimino, P.; Polimeno, A.; Zerbetto, M.; Zoleo, A. J. Am. Chem. Soc. 2006, 128, 15865
60. Zerbetto, M.; Polimeno, A.; Kotsyubynskyy, D.; Ghalebani, L.; Kowalewski, J.; Meirovitch, E.; Olsson, U.; Widmalm, G. J. Chem. Phys. 2009, 131, 234501
61. Polimeno, A.; Meirovitch, E.; Freed, J. H. Manuscript in preparation.
62. Cornilescu, G.; Bax, A. J. Am. Chem. Soc. 2000, 122, 10143
63. Fushman, D.; Cowburn, D. J. Biomol. NMR 1999, 13, 139
64. Moro, G. J.; Polimeno, A. J. Chem. Phys. 1997, 107, 7884
65. Freed, H. J.; Nayeem, A.; Rananavare, S. B. The Molecular Dynamics of Liquid Crystals; Luckhurst, G. R.; Veracini, C. A., Eds.; Kluwer Academic Publis'ers: Amsterdam, 1994; pp 271 - 312.
66. Abragam, A. Principles of Nuclear Magnetism; Oxford University Press (Clarendon): London, 1961.
67. Peng, J. W.; Wagner, G. In Methods in Enzymology; James, T. L.; Oppenheimer, N. J., Eds.; Academic Press: New York, 1994; Vol. 239, pp 563 - 595.
68. Barone, V.; Zerbetto, M.; Polimeno, A. J. Comput. Chem. 2009, 30, 2
69. Brink, D. M.; Satchler, G. R. Angular Momentum; Clarendon Press: Oxford, UK, 1968.
70. Spiegel, M. R.; Liu, J. Mathematical Handbook of Formulas and Tables, 2nd ed.; Schaum's Outline Series; McGraw-Hill: New York, 1999; p 266.
71. Fushman, D.; Tjandra, N.; Cowburn, D. J. Am. Chem. Soc. 1998, 120, 10947
72. Polnaszek, C. F.; Bruno, G. V.; Freed, J. H. J. Chem. Phys. 1973, 58, 3185
73. Polnaszek, C. F.; Freed, J. H. J. Phys. Chem. 1975, 79, 2283
74. Akke, M.; Bruschweiler, R.; Palmer III, A. G. J. Am. Chem. Soc. 1993, 115
75. Li, Z.; Raychaudhuri, S.; Wand, A. J. Protein Sci. 1996, 5, 2647
76. Yang, D.; Kay, L. E. J. Mol. Biol. 1996, 263, 369
77. Xue, Y.; Pavlova, M. S.; Ryabov, Y. E.; Reif, B.; Skrynnikov, N. R. J. Am. Chem. Soc. 2007, 129, 6827