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Volumn 47, Issue 17, 2008, Pages 4907-4915

Effector-induced structural fluctuation regulates the ligand affinity of an allosteric protein: Binding of inositol hexaphosphate has distinct dynamic consequences for the T and R states of hemoglobin

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; CHEMICAL SHIFT; CONFORMATIONS; CRYSTALLOGRAPHY; EXCHANGE INTERACTIONS; LIGANDS; MOLECULAR DYNAMICS; PHOSPHATES;

EID: 42449097652     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi7023699     Document Type: Article
Times cited : (24)

References (56)
  • 1
    • 0035957144 scopus 로고    scopus 로고
    • A signature of the T=>R transition in human hemoglobin
    • Mihailescu, M.-R., and Russu, I. M. (2001) A signature of the T=>R transition in human hemoglobin. Proc. Natl. Acad. Sci. U.S.A. 98, 3773-3777.
    • (2001) Proc. Natl. Acad. Sci. U.S.A , vol.98 , pp. 3773-3777
    • Mihailescu, M.-R.1    Russu, I.M.2
  • 3
    • 3042660617 scopus 로고    scopus 로고
    • Hemoglobin site-mutants reveal dynamical role of interhelical H-bonds in the allosteric pathway: Time-resolved UV resonance Raman evidence for intra-dimer coupling
    • Balakrishnan, G., Tsai, C.-H., Wu, Q., Case, M. A., Pevsner, A., McLendon, G. L., Ho, C., and Spiro, T. G. (2004) Hemoglobin site-mutants reveal dynamical role of interhelical H-bonds in the allosteric pathway: time-resolved UV resonance Raman evidence for intra-dimer coupling. J. Mol. Biol. 340, 857-868.
    • (2004) J. Mol. Biol , vol.340 , pp. 857-868
    • Balakrishnan, G.1    Tsai, C.-H.2    Wu, Q.3    Case, M.A.4    Pevsner, A.5    McLendon, G.L.6    Ho, C.7    Spiro, T.G.8
  • 4
    • 0036382874 scopus 로고    scopus 로고
    • NMR investigation of the dynamics of tryptophan side-chains in hemoglobins
    • Yuan, Y., Simplaceanu, V., Lukin, J. A., and Ho, C. (2002) NMR investigation of the dynamics of tryptophan side-chains in hemoglobins. J. Mol. Biol. 321, 863-878.
    • (2002) J. Mol. Biol , vol.321 , pp. 863-878
    • Yuan, Y.1    Simplaceanu, V.2    Lukin, J.A.3    Ho, C.4
  • 5
    • 34250178787 scopus 로고    scopus 로고
    • A comparative NMR study of the polypeptide backbone dynamics of hemoglobin in the deoxy and carbonmonoxy forms
    • Song, X.-j., Yuan, Y., Simplaceanu, V., Sahu, S. C., Ho, N. T., and Ho, C. (2007) A comparative NMR study of the polypeptide backbone dynamics of hemoglobin in the deoxy and carbonmonoxy forms. Biochemistry 46, 6795-6803.
    • (2007) Biochemistry , vol.46 , pp. 6795-6803
    • Song, X.-J.1    Yuan, Y.2    Simplaceanu, V.3    Sahu, S.C.4    Ho, N.T.5    Ho, C.6
  • 6
    • 0026795182 scopus 로고
    • A third quaternary structure of human hemoglobin A at 1.7-A resolution
    • Silva, M. M., Rogers, P. H., and Arnone, A. (1992) A third quaternary structure of human hemoglobin A at 1.7-A resolution. J. Biol. Chem. 267, 17248-17256.
    • (1992) J. Biol. Chem , vol.267 , pp. 17248-17256
    • Silva, M.M.1    Rogers, P.H.2    Arnone, A.3
  • 9
    • 20444417111 scopus 로고    scopus 로고
    • The enigma of the liganded hemoglobin end state: A novel quaternary structure of human carbonmonoxy hemoglobin
    • Safo, M. K., and Abraham, D. J. (2005) The enigma of the liganded hemoglobin end state: a novel quaternary structure of human carbonmonoxy hemoglobin. Biochemistry 44, 8347-8359.
    • (2005) Biochemistry , vol.44 , pp. 8347-8359
    • Safo, M.K.1    Abraham, D.J.2
  • 10
    • 33645978391 scopus 로고    scopus 로고
    • Quaternary structure of carbonmonoxyhemoglobins in solution: Structural changes induced by the allosteric effector inositol hexaphosphate
    • Gong, Q., Simplaceanu, V., Lukin, J. A., Giovannelli, J. L., Ho, N. T., and Ho, C. (2006) Quaternary structure of carbonmonoxyhemoglobins in solution: structural changes induced by the allosteric effector inositol hexaphosphate. Biochemistry 45, 5140-5148.
    • (2006) Biochemistry , vol.45 , pp. 5140-5148
    • Gong, Q.1    Simplaceanu, V.2    Lukin, J.A.3    Giovannelli, J.L.4    Ho, N.T.5    Ho, C.6
  • 11
    • 34548496030 scopus 로고    scopus 로고
    • Insights into the solution structure of human deoxyhemoglobin in the absence and presence of an allosteric effector
    • Sahu, S. C., Simplaceanu, V., Gong, Q., Ho, N. T., Tian, F., Prestegard, J. H., and Ho, C. (2007) Insights into the solution structure of human deoxyhemoglobin in the absence and presence of an allosteric effector. Biochemistry 46, 9973-9980.
    • (2007) Biochemistry , vol.46 , pp. 9973-9980
    • Sahu, S.C.1    Simplaceanu, V.2    Gong, Q.3    Ho, N.T.4    Tian, F.5    Prestegard, J.H.6    Ho, C.7
  • 12
    • 78651189765 scopus 로고
    • On the nature of allosteric transitions: A plausible model
    • Monod, J., Wyman, J., and Changeux, J.-P. (1965) On the nature of allosteric transitions: a plausible model. J. Mol. Biol. 12, 88-118.
    • (1965) J. Mol. Biol , vol.12 , pp. 88-118
    • Monod, J.1    Wyman, J.2    Changeux, J.-P.3
  • 13
    • 0014958182 scopus 로고
    • Stereochemistry of cooperative effects in haemoglobin
    • Perutz, M. F. (1970) Stereochemistry of cooperative effects in haemoglobin. Nature 228, 726-739.
    • (1970) Nature , vol.228 , pp. 726-739
    • Perutz, M.F.1
  • 15
    • 4243155782 scopus 로고    scopus 로고
    • NMR characterization of the dynamics of biomacromolecules
    • Palmer, A. G., III (2004) NMR characterization of the dynamics of biomacromolecules. Chem. Rev. 104, 3623-3640.
    • (2004) Chem. Rev , vol.104 , pp. 3623-3640
    • Palmer III, A.G.1
  • 16
    • 0028941877 scopus 로고
    • Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme
    • Mandel, A. M., Akke, M., and Palmer, A. G., III (1995) Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme. J. Mol. Biol. 246, 144-163.
    • (1995) J. Mol. Biol , vol.246 , pp. 144-163
    • Mandel, A.M.1    Akke, M.2    Palmer III, A.G.3
  • 17
    • 16244365477 scopus 로고    scopus 로고
    • Solution NMR spin relaxation methods for characterizing chemical exchange in high-molecular- weight systems
    • Palmer, A. G., III, Grey, M. J., and Wang, C. Y. (2005) Solution NMR spin relaxation methods for characterizing chemical exchange in high-molecular- weight systems. Methods Enzymol. 394, 430-465.
    • (2005) Methods Enzymol , vol.394 , pp. 430-465
    • Palmer III, A.G.1    Grey, M.J.2    Wang, C.Y.3
  • 18
    • 1242331365 scopus 로고    scopus 로고
    • Backbone resonance assignments of human adult hemoglobin in the carbonmonoxy form
    • Lukin, J. A., Kontaxis, G., Simplaceanu, V., Yuan, Y., Bax, A., and Ho, C. (2004) Backbone resonance assignments of human adult hemoglobin in the carbonmonoxy form. J. Biomol. NMR 28, 203-204.
    • (2004) J. Biomol. NMR , vol.28 , pp. 203-204
    • Lukin, J.A.1    Kontaxis, G.2    Simplaceanu, V.3    Yuan, Y.4    Bax, A.5    Ho, C.6
  • 19
    • 34250155975 scopus 로고    scopus 로고
    • Backbone resonance assignment of human adult hemoglobin in the deoxy form
    • Sahu, S. C., Simplaceanu, V., Ho, N. T., Giovannelli, J. L., and Ho, C. (2006) Backbone resonance assignment of human adult hemoglobin in the deoxy form. J. Biomol. NMR 36, 1.
    • (2006) J. Biomol. NMR , vol.36 , pp. 1
    • Sahu, S.C.1    Simplaceanu, V.2    Ho, N.T.3    Giovannelli, J.L.4    Ho, C.5
  • 20
    • 0041866694 scopus 로고    scopus 로고
    • Mapping chemical exchange in proteins with MW > 50 KD
    • Wang, C., Ranee, M., and Palmer, A. G., III (2003) Mapping chemical exchange in proteins with MW > 50 KD. J. Am. Chem. Soc. 125, 8968-8969.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 8968-8969
    • Wang, C.1    Ranee, M.2    Palmer III, A.G.3
  • 21
  • 23
    • 0005759665 scopus 로고
    • Interaction of haemoglobin with ions binding of inositol hexaphosphate to human haemoglobin A
    • Janig, G.-R., Ruckpaul, K., and Jung, F. (1971) Interaction of haemoglobin with ions binding of inositol hexaphosphate to human haemoglobin A. FEBS Lett. 17, 173-176.
    • (1971) FEBS Lett , vol.17 , pp. 173-176
    • Janig, G.-R.1    Ruckpaul, K.2    Jung, F.3
  • 26
    • 0015911736 scopus 로고
    • Effects of anions and ligands on the tertiary structure around ligand binding site in human adult hemoglobin
    • Lindstrom, T. R., and Ho, C. (1973) Effects of anions and ligands on the tertiary structure around ligand binding site in human adult hemoglobin. Biochemistry 12, 134-139.
    • (1973) Biochemistry , vol.12 , pp. 134-139
    • Lindstrom, T.R.1    Ho, C.2
  • 27
    • 0037064138 scopus 로고    scopus 로고
    • Crystal structure of horse carbonmonoxyhemoglobin-bezafibrate complex at 1.55 A resolution
    • Shibayama, N., Miura, S., Tame, J. R. H., Yonetani, T., and Park, S.-Y. (2002) Crystal structure of horse carbonmonoxyhemoglobin-bezafibrate complex at 1.55 A resolution. J. Biol. Chem. 277, 38791-38796.
    • (2002) J. Biol. Chem , vol.277 , pp. 38791-38796
    • Shibayama, N.1    Miura, S.2    Tame, J.R.H.3    Yonetani, T.4    Park, S.-Y.5
  • 28
    • 0017887927 scopus 로고
    • Characterization of the ionizable groups interacting with anionic allosteric effectors of human hemoglobin
    • Bucci, E., Salahuddin, A., Bonaventura, J., and Bonaventura, C. (1977) Characterization of the ionizable groups interacting with anionic allosteric effectors of human hemoglobin. J. Biol. Chem. 253, 821-827.
    • (1977) J. Biol. Chem , vol.253 , pp. 821-827
    • Bucci, E.1    Salahuddin, A.2    Bonaventura, J.3    Bonaventura, C.4
  • 29
    • 0016243691 scopus 로고
    • Calorimetric studies of hemoglobin function, the binding of 2,3-diphosphsphoglycerate and inositol hexaphosphate to human hemoglobin A
    • Nelson, D. P., Miller, W. D., and Kiesow, L. A. (1974) Calorimetric studies of hemoglobin function, the binding of 2,3-diphosphsphoglycerate and inositol hexaphosphate to human hemoglobin A. J. Biol. Chem. 249, 4770-4775.
    • (1974) J. Biol. Chem , vol.249 , pp. 4770-4775
    • Nelson, D.P.1    Miller, W.D.2    Kiesow, L.A.3
  • 31
    • 0016345571 scopus 로고
    • Structure of inositol hexaphosphate-human deoxyhaemoglobin complex
    • Arnone, A., and Perutz, M. F. (1974) Structure of inositol hexaphosphate-human deoxyhaemoglobin complex. Nature 249, 34-36.
    • (1974) Nature , vol.249 , pp. 34-36
    • Arnone, A.1    Perutz, M.F.2
  • 32
    • 0019390569 scopus 로고
    • 31P NMR study of the kinetics of binding of myo-inositol hexakisphosphate to human hemoglobin: Observation of fast-exchange kinetics in high-affinity systems
    • 31P NMR study of the kinetics of binding of myo-inositol hexakisphosphate to human hemoglobin: observation of fast-exchange kinetics in high-affinity systems. Eur. J. Biochem. 118, 95-104.
    • (1981) Eur. J. Biochem , vol.118 , pp. 95-104
    • Zuiderweg, E.R.P.1    Hamers, L.F.2    Rollema, H.S.3    Bruin, S.H.D.4    Hilbers, C.W.5
  • 33
    • 0034805574 scopus 로고    scopus 로고
    • Molecular dynamics analysis of a second phosphate site in the hemoglobins of the seabird, south polar skua. Is there a site-site migratory mechnism along the central cavity
    • Riccio, A., Tamburrini, M., Giardina, B., and Prisco, G. d. (2001) Molecular dynamics analysis of a second phosphate site in the hemoglobins of the seabird, south polar skua. Is there a site-site migratory mechnism along the central cavity. Biophys. J. 81, 1938-1946.
    • (2001) Biophys. J , vol.81 , pp. 1938-1946
    • Riccio, A.1    Tamburrini, M.2    Giardina, B.3    Prisco, G.D.4
  • 34
    • 12744260687 scopus 로고    scopus 로고
    • R-state hemoglobin bound to heterotropic effectors: Models of the DPG, IHP, and RSRl3 binding sites
    • Laberge, M., Kovesi, I., Yonetani, T., and Fidy, J. (2005) R-state hemoglobin bound to heterotropic effectors: models of the DPG, IHP, and RSRl3 binding sites. FEBS Lett. 579, 627-632.
    • (2005) FEBS Lett , vol.579 , pp. 627-632
    • Laberge, M.1    Kovesi, I.2    Yonetani, T.3    Fidy, J.4
  • 35
    • 0021683974 scopus 로고
    • The crystal structure of human deoxyhaemoglobin at 1.74 A resolution
    • Fermi, G., Perutz, M. F., and Shaanan, B. (1984) The crystal structure of human deoxyhaemoglobin at 1.74 A resolution. J. Mol. Biol. 175, 159-174.
    • (1984) J. Mol. Biol , vol.175 , pp. 159-174
    • Fermi, G.1    Perutz, M.F.2    Shaanan, B.3
  • 36
    • 0018361151 scopus 로고
    • Haemoglobin: The structural changes related to ligand binding and its allosteric mechanism
    • Baldwin, J., and Chothia, C. (1979) Haemoglobin: the structural changes related to ligand binding and its allosteric mechanism. J. Mol. Biol. 129, 175-220.
    • (1979) J. Mol. Biol , vol.129 , pp. 175-220
    • Baldwin, J.1    Chothia, C.2
  • 37
    • 0033891899 scopus 로고    scopus 로고
    • Chain-selective isotopic labeling for NMR studies of large multimeric proteins: Application to hemoglobin
    • Simplaceanu, V., Lukin, J. A., Fang, T.-Y., Zou, M., Ho, N. T., and Ho, C. (2000) Chain-selective isotopic labeling for NMR studies of large multimeric proteins: application to hemoglobin. Biophys. J. 79, 1146-1154.
    • (2000) Biophys. J , vol.79 , pp. 1146-1154
    • Simplaceanu, V.1    Lukin, J.A.2    Fang, T.-Y.3    Zou, M.4    Ho, N.T.5    Ho, C.6
  • 41
    • 0020523131 scopus 로고
    • Subunit heterogeneity in the structure and dynamics of hemoglobin. A transient Raman study
    • Scott, T. W., Friedman, J. M., Ikeda-Saito, M., and Yonetani, T. (1983) Subunit heterogeneity in the structure and dynamics of hemoglobin. A transient Raman study. FEBS Lett. 158, 68-72.
    • (1983) FEBS Lett , vol.158 , pp. 68-72
    • Scott, T.W.1    Friedman, J.M.2    Ikeda-Saito, M.3    Yonetani, T.4
  • 42
    • 21244479077 scopus 로고    scopus 로고
    • Liganded hemoglobin structural perturbations by allosteric effector L35
    • Chen, Q., Lalezari, I., Nagel, R. L., and Hirsch, R. E. (2005) Liganded hemoglobin structural perturbations by allosteric effector L35. Biophys. J. 88, 2057-2067.
    • (2005) Biophys. J , vol.88 , pp. 2057-2067
    • Chen, Q.1    Lalezari, I.2    Nagel, R.L.3    Hirsch, R.E.4
  • 43
    • 0025299882 scopus 로고
    • Structure of deoxy-quaternary haemoglobin with ligated beta subunits
    • Luisi, B., Liddington, B., Fermi, G., and Shibayama, N. (1990) Structure of deoxy-quaternary haemoglobin with ligated beta subunits. J. Mol. Biol. 214, 7-14.
    • (1990) J. Mol. Biol , vol.214 , pp. 7-14
    • Luisi, B.1    Liddington, B.2    Fermi, G.3    Shibayama, N.4
  • 44
    • 0024953088 scopus 로고
    • Mechanisms of cooperativity and allosteric regulation in proteins
    • Perutz, M. F. (1989) Mechanisms of cooperativity and allosteric regulation in proteins. Q. Rev. Biophys. 22, 139-236.
    • (1989) Q. Rev. Biophys , vol.22 , pp. 139-236
    • Perutz, M.F.1
  • 45
    • 0033061632 scopus 로고    scopus 로고
    • Molecular dynamics of human methemoglobin: The transmission of conformational information between subunits in an αβ dimer
    • Ramadas, N., and Rifkin, J. M. (1999) Molecular dynamics of human methemoglobin: the transmission of conformational information between subunits in an αβ dimer. Biophys. J. 76, 1796-1811.
    • (1999) Biophys. J , vol.76 , pp. 1796-1811
    • Ramadas, N.1    Rifkin, J.M.2
  • 46
    • 0034649408 scopus 로고    scopus 로고
    • Novel recombinant hemoglobin, rHb(beta N108Q), with low oxygen affinity, high cooperativity, and stability against autoxidation
    • Tsai, C.-H., Fang, T. Y., Ho, N. T., and Ho, C. (2000) Novel recombinant hemoglobin, rHb(beta N108Q), with low oxygen affinity, high cooperativity, and stability against autoxidation. Biochemistry 39, 13719-13729.
    • (2000) Biochemistry , vol.39 , pp. 13719-13729
    • Tsai, C.-H.1    Fang, T.Y.2    Ho, N.T.3    Ho, C.4
  • 47
    • 0033529307 scopus 로고    scopus 로고
    • 2 subunit interfaces in the cooperative oxygenation process
    • 2 subunit interfaces in the cooperative oxygenation process. Biochemistry 38, 8751-8761.
    • (1999) Biochemistry , vol.38 , pp. 8751-8761
    • Tsai, C.-H.1    Shen, T.-J.2    Ho, N.T.3    Ho, C.4
  • 48
    • 0036099514 scopus 로고    scopus 로고
    • New insights into the allosteric mechanism of human hemoglobin from molecular dynamics simulations
    • Mouawad, L., Perahia, D., Robert, C. H., and Guilbert, C. (2002) New insights into the allosteric mechanism of human hemoglobin from molecular dynamics simulations. Biophys. J. 82, 3224-3245.
    • (2002) Biophys. J , vol.82 , pp. 3224-3245
    • Mouawad, L.1    Perahia, D.2    Robert, C.H.3    Guilbert, C.4
  • 49
    • 0033988897 scopus 로고    scopus 로고
    • Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex
    • Lee, A. L., Kinnear, S. A., and Wand, A. J. (2000) Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex. Nat. Struct. Biol. 7, 72-77.
    • (2000) Nat. Struct. Biol , vol.7 , pp. 72-77
    • Lee, A.L.1    Kinnear, S.A.2    Wand, A.J.3
  • 50
    • 33947660087 scopus 로고    scopus 로고
    • Temperature dependence of fast dynamics in protein
    • Song, X.-j., Flynn, P. F., Sharp, K., and Wand, A. J. (2007) Temperature dependence of fast dynamics in protein. Biophys. J. 92, L43-L45.
    • (2007) Biophys. J , vol.92
    • Song, X.-J.1    Flynn, P.F.2    Sharp, K.3    Wand, A.J.4
  • 51
    • 0034728579 scopus 로고    scopus 로고
    • The static magnetic field dependence of chemical exchange linebroadening defines the NMR chemical shift time scale
    • Millet, O., Loria, J. P., Kroenke, C. D., Pons, M., and Palmer, A. G., III. (2000) The static magnetic field dependence of chemical exchange linebroadening defines the NMR chemical shift time scale. J. Am. Chem. Soc. 122, 2867-2877.
    • (2000) J. Am. Chem. Soc , vol.122 , pp. 2867-2877
    • Millet, O.1    Loria, J.P.2    Kroenke, C.D.3    Pons, M.4    Palmer III, A.G.5
  • 52
    • 0034687668 scopus 로고    scopus 로고
    • Interface sliding as illustrated by the multiple quaternary structures of liganded hemoglobin
    • Mueser, T. C., Rogers, P. H., and Arnone, A. (2000) Interface sliding as illustrated by the multiple quaternary structures of liganded hemoglobin. Biochemistry 39, 15353-15364.
    • (2000) Biochemistry , vol.39 , pp. 15353-15364
    • Mueser, T.C.1    Rogers, P.H.2    Arnone, A.3
  • 53
    • 0037054844 scopus 로고    scopus 로고
    • Heterotropic effectors control the hemoglobin function by interacting with its T and R states - a new view on the principle of allostery
    • Tsuneshige, A., Park, S., and Yonetani, T. (2002) Heterotropic effectors control the hemoglobin function by interacting with its T and R states - a new view on the principle of allostery. Biophys. Chem. 98, 49-63.
    • (2002) Biophys. Chem , vol.98 , pp. 49-63
    • Tsuneshige, A.1    Park, S.2    Yonetani, T.3
  • 54
    • 0346220393 scopus 로고    scopus 로고
    • The role of dynamics in allosteric regulation
    • Kern, D., and Zuiderweg, E. R. (2003) The role of dynamics in allosteric regulation. Curr. Opin. Struct. Biol. 13, 748-757.
    • (2003) Curr. Opin. Struct. Biol , vol.13 , pp. 748-757
    • Kern, D.1    Zuiderweg, E.R.2
  • 55
    • 0001858251 scopus 로고
    • Application of a theory of enzyme specificity to protein synthesis
    • Koshland, D. E. (1958) Application of a theory of enzyme specificity to protein synthesis. Proc. Natl. Acad. Sci U.S.A. 44, 98-104.
    • (1958) Proc. Natl. Acad. Sci U.S.A , vol.44 , pp. 98-104
    • Koshland, D.E.1


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