Genetic diversity and population structure of Panonychus citri (Acari: Tetranychidae), in China based on mitochondrial COI gene sequences

Journal of Economic Entomology

Volumn 103, Issue 6, 2010, Pages 2204-2213

  Yuan, Ming Long ^a   Wei, Dan Dan ^a   Zhang, Kun ^a   Gao, Yu Zhen ^a   Liu, Yong Hua ^a   Wang, Bao Jun ^a   Wang, Jin Jun ^a  

^a SOUTHWEST UNIVERSITY   (China)

Author keywords

genetic differentiation; mitochondrial cytochrome oxidase subunit I; nucleotide diversity; Panonychus citri; population structure

Indexed keywords

CYTOCHROME C OXIDASE;

ANIMAL; ARTICLE; CHINA; COMPARATIVE STUDY; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; PHYLOGENY; POPULATION GENETICS; TETRANYCHIDAE;

ANIMALS; CHINA; ELECTRON TRANSPORT COMPLEX IV; GENETIC VARIATION; GENETICS, POPULATION; HAPLOTYPES; PHYLOGENY; SEQUENCE ANALYSIS, DNA; TETRANYCHIDAE;

ACARI; CITRUS; PANONYCHUS CITRI; TETRANYCHIDAE;

EID: 78651066214     PISSN: 00220493     EISSN: None     Source Type: Journal    
DOI: 10.1603/EC09392     Document Type: Article

References (72)

1. Carbonnelle, S., T. Hance, A. Migeon, P. Baret, S. Cros-Arteil, and M. Navajas. 2007. Microsatellite markers reveal spatial genetic structure of Tetranychus urticae (Acari: Tet-ranychidae) populations along a latitudinal gradient in Europe. Exp. Appl. Acarol. 41: 225-241.
2. Clement, M., D. Posada, and K. Crandall. 2000. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9: 1657-1659.
3. Cruickshank, R. 2002. Molecular markers for the phyloge-netics of mites and ticks. Syst. Appl. Acarol. 7: 3-14.
4. David, J., K. Huber, A. Failloux, D. Rey, and J. Meyran. 2003. The role of environment in shaping the genetic diversity of the subalpine mosquito, Aedes rusticus (Diptera, Cu-licidae). Mol. Ecol. 12: 1951-1961.
5. Desloire, S., C. V. Moro, C. Chauve, and L. Zenner. 2006. Comparison of four methods of extracting DNA from D. gallinae (Acari: Dermanyssidae). Vet. Res. 37: 725-732.
6. Dupanloup, I., S. Schneider, and L. Excoffier. 2002. A simulated annealing approach to define the genetic structure of populations. Mol. Ecol. 11: 2571-2581.
7. Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
8. Excoffier, L., P. Smouse, and J. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
9. Felsenstein, J. 1992. Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates. Genet. Res. 59: 139-147.
10. Fu, Y. X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
11. Fu, Y., and W. Li. 1993. Statistical tests of neutrality of mutations. Genetics 133: 693-709.
12. Furuhashi, K. 1980. Studies on population dynamics of citrus red mite, Panonychus citri McGregor in citrus orchards. Shizuoka Pref. Citrus Exp. Stn. Spec. Bull. 4: 1-56.
13. Ge, R. X., Z. H. Li, G. R. Shen-Tu, and J. H. Tu. 1989. Forecasting and controlling of major citrus pests and diseases. Hunan Science and Technology Press, Chang-sha, China.
14. Gotoh, T., and M. Kubota. 1997. Population dynamics of the citrus red mite, Panonychus citri (McGregor)(Acari: Tet-ranychidae) in Japanese pear orchards. Exp. Appl. Acarol. 21: 343-356.
15. Gotoh, T., Y. Kitashima, and I. Adachi. 2004. Geographic variation of esterase and malate dehydrogenase allo-zymes in two spider mite species, Panonychus osmanthi and P. citri (Acari: Tetranychidae) in Japan. Int. J. Acarol. 30: 45-54. (Pubitemid 38774273)
16. Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52: 696-704.
17. Helle, W., and W. Overmeer. 1973. Variability in tet-ranychid mites. Annu. Rev. Entomol. 18: 97-120.
18. Hinomoto, N., and A. Takafuji. 1994. Studies on the population structure of the two-spotted spider mite, Tetrany-chus urticae Koch, by allozyme variability analysis. Appl. Entomol. Zool. 29: 259-266.
19. Hinomoto, N., and A. Takafuji. 2001. Genetic diversity and phylogeny of the Kanzawa spider mite, Tetranychus kan-zawai, in Japan. Exp. Appl. Acarol. 25: 355-370.
20. Huelsenbeck, J., F. Ronquist, R. Nielsen, and J. Bollback. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294: 2310-2314.
21. Izquierdo, J., V. Mansanet, J. Sanz, and J. Puiggros. 2002. Development of Envidor for the control of spider mites in Spanish citrus production. Pßanzenschutz-Nachrich-ten Bayer 55: 2-3.
22. Jensen, J., A. Bohonak, and S. Kelley. 2005. Isolation by distance, web service. BMC Genet. 6: 13.
23. Kunimoto, Y., N. Shinkaji, and H. Amano. 1993. Spread of the citrus red mite, Panonychus citri (McGregor) (Acari: Tetranychidae), from Irex crenata Thunb, to a Japanese-pear orchard. Jpn. J. Appl. Entomol. Zool. 37: 69-73.
24. Li, T., X. Chen, and X. Hong. 2009. Population genetic structure of Tetranychus urticae and its sibling species Tetranychus cinnabaribus (Acari: Tetranychidae) in China as inferred from microsatellite data. Ann. Entomol. Soc. Am. 102: 674-683.
25. Librado, P., and J. Rozas. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
26. Mahani, M. K., N. Inomata, A. Saboori, B.E.S. Tabatabaei, H. Ishiyama, A. Ariana, and A. E. Szmidt. 2009. Genetic variation in populations of Allothrombium pulvinum (Acari: Trombidiidae) from northern Iran revealed by mitochondrial coxI and nuclear rDNA ITS2 sequences. Exp. Appl. Acarol. 48: 273-289.
27. Marangi, M., C. J. de Luna, M. A. Cafiero, A. Camarda, S. le Bouquin, D. Huonnic, A. Giangaspero, and O.A.E. Spara-gano. 2009. Phylogenetic relationship between Der-manyssus gallinae populations in European countries based on mitochondrial COI gene sequences. Exp. Appl. Acarol. 48: 143-155.
28. Margolies, D. 1987. Conditions eliciting aerial dispersal behavior Banks grass mite, Oligonychus pratensis (Acari: Tetranychidae). Environ. Entomol. 16: 928-932.
29. Meng, H. S., K. Y. Wang, X. Y. Jiang, and M. Q. Yi. 2000. Studies on the resistance of Panonychus citri to several acaricides. Pesticides 39: 26-28.
30. Navajas, M., and B. Fenton. 2000. The application of molecular markers in the study of diversity in acarology: a review. Exp. Appl. Acarol. 24: 751-774. (Pubitemid 32258511)
31. Navajas, M., J. Gutierrez, J. Lagnel, and P. Boursot. 1996. Mitochondrial cytochrome oxidase I in tetranychid mites: a comparison between molecular phylogeny and changes of morphological and life history traits. Bull. Entomol. Res. 86: 407-417.
32. Navajas, M., M. J. Perrot-Minnot, J. Lagnel, A. Migeon, T. Bourse, and J. M. Cornuet. 2002. Genetic structure of a greenhouse population of the spider mite Tetranychus urticae: spatio-temporal analysis with microsatellite markers. Insect Mol. Biol. 11: 157-165.
33. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
34. Nei, M., T. Maruyama, and R. Chakraborty. 1975. The bottleneck effect and genetic variability in populations. Evolution 29: 1-10.
35. Osakabe, M. 1987. Esterase activities and developmental success of the citrus red mite, Panonychus citri (McGregor) (Acarina: Tetranychidae), on several plants. Appl. Entomol. Zool. 22: 35-44.
36. Osakabe, M. 1991. Esterase isozyme patterns corresponding to differences in diapause attribute among the populations of the citrus red mite, Panonychus citri (McGregor) (Acari: Tetranychidae). Bull. Fruit Tree Res. Stn. 21: 85-94.
37. Osakabe, M., and S. Komazaki. 1996a. Host range segregation and reproductive incompatibility among Panonychus citri populations infesting Osmanthus trees and other host plants. Appl. Entomol. Zool. 31: 397-406.
38. Osakabe, M., and S. Komazaki. 1996b. Differences in ester-ase isozymes between Panonychus citri populations infesting citrus and Osmanthus. Exp. Appl. Acarol. 20: 113-119.
39. Osakabe, M., and Y. Sakagami. 1993. Estimation of genetic variation in Japanese populations of the citrus red mite, Panonychus citri (McGregor) (Acari: Tetranychidae) on the basis of esterase allele frequencies. Exp. Appl. Acarol. 17: 749-755.
40. Osakabe, M., and Y. Sakagami. 1994. RFLP analysis of ribo-somal DNA in sibling species of spider mite, genus Pan-onychus (Acari: Tetranychidae). Insect Mol. Biol. 3: 63-66.
41. Osakabe, M., K. Goka, S. Toda, T. Shintaku, and H. Amano. 2005. Significance of habitat type for the genetic population structure of Panonychus citri (Acari: Tetranychi-dae). Exp. Appl. Acarol. 36: 25-40.
42. Osakabe, M., N. Hinomoto, S. Toda, S. Komazaki, and K. Goka. 2000. Molecular cloning and characterization of a microsatellite locus found in an RAPD marker of a spider mite, Panonychus citri (Acari: Tetranychidae). Exp. Appl. Acarol. 24: 385-395.
43. Paz, Z., U. Gerson, and A. Sztejnberg. 2007. Assaying three new fungi against citrus mites in the laboratory, and a field trial. Biocontrol 52: 855-862.
44. Posada, D. 2008. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25: 1253-1256.
45. Posada, D., and K. Crandall. 2001. Intraspecific gene genealogies: trees grafting into networks. Trends Ecol. Evol. 16: 37-45.
46. Ramos-Onsins, S., and J. Rozas. 2002. Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 19: 2092-2100.
47. Ran, C., Y. Chen, and J. Wang. 2009. Susceptibility and car-boxylesterase activity of five field populations of Panony-chus citri (McGregor) (Acari: Tetranychidae) to four acaricides. Int. J. Acarol. 35: 115-121.
48. Ran, C., Y. Chen, M. L. Yuan, J. J. Wang, H. Liu, and T. Yao. 2008. Susceptibility of Panonychus citri field populations to different acaricides. Acta Phytophylacica Sin. 35: 537-540.
49. Rogers, A. 1995. Genetic evidence for a Pleistocene population explosion. Evolution 49: 608-615.
50. Rogers, A. R., and H. Harpending. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9: 552-569.
51. Ros, V.I.D., and J.A.J. Breeuwer. 2007. Spider mite (Acari: Tetranychidae) mitochondrial COI phylogeny reviewed: host plant relationships, phylogeography, reproductive parasites and barcoding. Exp. Appl. Acarol. 42: 239-262.
52. Ruiz, E. A., J. E. Rinehart, J. L. Hayes, and G. Zuniga. 2009. Effect of geographic isolation on genetic differentiation in Dendroctonus pseudotsugae (Coleoptera: Curculion-idae). Hereditas 146: 79-92.
53. Russell, A. L., R. A. Medellin, and G. F. Mccracken. 2005. Genetic variation and migration in the Mexican free-tailed bat (Tadarida brasiliensis mexicana). Mol. Ecol. 14: 2207-2222.
54. Sabelis, M., and M. Dicke. 1985. Long-range dispersal and searching behaviour, pp. 141-160. In W. Helle and M. W. Sabelis (eds.), Spider mites: their biology, natural enemies and control, vol. 1B. Elsevier, Amsterdam, The Netherlands.
55. Smitley, D., and G. Kennedy. 1985. Photo-oriented aerial-dispersal behavior of Tetranychus urticae (Acari: Tet-ranychidae) enhances escape from the leaf surface. Ann. Entomol. Soc. Am. 78: 609-614.
56. Smitley, D., and G. Kennedy. 1988. Aerial dispersal of the two-spotted spider mite (Tetranychus urticae) from field corn. Exp. Appl. Acarol. 5: 33-46.
57. Takafuji, A., A. Ozawa, H. Nemoto, and T. Gotoh. 2000. Spider mites of Japan: their biology and control. Exp. Appl. Acarol. 24: 319-335.
58. Takafuji, A., and N. Morimoto. 1983. Diapause attributes and seasonal occurrences of two populations of the citrus red mite, Panonychus citri (McGregor) on pear (Acarina: Tetranychidae). Appl. Entomol. Zool. 18: 525-532.
59. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599.
60. Thompson, J., T. Gibson, F. Plewniak, F. Jeanmougin, and D. Higgins. 1997. The CLUSTAL-X windows interface: ßexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
61. Toda, S., M. Osakabe, and S. Komazaki. 2000. Interspecific diversity of mitochondrial COI sequences in Japanese Panonychus species (Acari: Tetranychidae). Exp. Appl. Acarol. 24: 821-829.
62. Toda, S., M. Osakabe, and S. Komazaki. 2001. Detection of a point mutation in mitochondrial COI gene of Panony-chus citri (Acari: Tetranychidae) using PCR amplification of specific alleles. J. Acarol. Soc. Jpn. 10: 37-41.
63. Tsagkarakou, A., M. Navajas, J. Lagnel, and N. Pasteur. 1997. Population structure in the spider mite Tetranychus ur-ticae (Acari: Tetranychidae) from Crete based on multiple allozymes. Heredity 78: 84-92.
64. Tsagkarakou, A., M. Navajas, P. Papaioannou-Souliotis, and N. Pasteur. 1998. Gene ßow among Tetranychus urticae (Acari: Tetranychidae) populations in Greece. Mol. Ecol. 7: 71-79.
65. Weeks, A., Y. Fripp, and A. Hoffmann. 1995. Genetic structure of Halotydeus destructor and Penthaleus major populations in Victoria (Acari: Penthaleidae). Exp. Appl. Acarol. 19: 633-646.
66. Xia, X., and Z. Xie. 2001. DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 92: 371-373.
67. Xie, L., R. R. Xie, K. J. Zhang, and X. Y. Hong. 2008. Genetic relationship between the carmine spider mite Tetrany-chus cinnabarinus (Boisduval) and the two-spotted mite T. urticae Koch in China based on the mtDNA COI and rDNA ITS2 sequences. Zootaxa 1726: 18-32.
68. Xie, L., X. Y. Hong, and X. F. Xue. 2006. Population genetic structure of the twospotted spider mite (Acari: Tet-ranychidae) from China. Ann. Entomol. Soc. Am. 99: 959-965.
69. Xu, J. G., and X. X. Deng. 2008. Current status of citrus industry in China, pp. 18-24. In Citrus Industry in China. China Agriculture Press, Beijing, China.
70. Yamamoto, A., H. Yoneda, R. Hatano, and M. Asada. 1995. Field selection experiments with hexythiazox in the citrus red mite, Panonychus citri (McGregor). J. Pestic. Sci. 20: 307-315.
71. Yuan, M. L. 2008. Acaricide susceptibility and population genetic differentiation of Panonychus citri McGregor on different citrus germplasms. M.S. thesis. Southwest University, Chongqing, China.
72. Yuan, M. L., C. Ran, Y. Li, and J. J. Wang. 2008. Effect of different citrus germplasms on acaricide susceptibility and esterase isozymes of Panonychus citri McGregor. Acta Phytophylacica Sin. 35: 187-188.