Unraveling the evolution of auxin signaling

Plant Physiology

Volumn 155, Issue 1, 2011, Pages 209-221

  de Smet, Ive ^a,b,c,d   Voß, Ute ^e   Lau, Steffen ^c   Wilson, Michael ^e   Shao, Ning ^f   Timme, Ruth E ^g   Swarup, Ranjan ^e   Kerr, Ian ^e   Hodgman, Charlie ^e   Bock, Ralph ^f   Bennett, Malcolm ^e   Jürgens, Gerd ^c,d   Beeckman, Tom ^a,b  

^a DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

^c MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

^d UNIVERSITY OF TÜBINGEN   (Germany)

^e UNIVERSITY OF NOTTINGHAM   (United Kingdom)

^f MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

^g Bldg 142   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; CHLOROPHYTA; COLEOCHAETE ORBICULARIS; EMBRYOPHYTA; SPIROGYRA PRATENSIS; STREPTOPHYTA;

EID: 78650965806     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.110.168161     Document Type: Article

References (80)

1. Basu S, Sun H, Brian L, Quatrano RL, Muday GK (2002) Early embryo development in Fucus distichus is auxin sensitive. Plant Physiol 130: 292-302
2. Becker B, Marin B (2009) Streptophyte algae and the origin of embryophytes. Ann Bot (Lond) 103: 999-1004
3. Beer LL, Boyd ES, Peters JW, Posewitz MC (2009) Engineering algae for biohydrogen and biofuel production. Curr Opin Biotechnol 20: 264-271
4. Benková E, Michniewicz M, Sauer M, Teichmann T, Seifertová D, Jürgens G, Friml J (2003) Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115: 591-602
5. Bennett MJ, Marchant A, Green HG, May ST, Ward SP, Millner PA, Walker AR, Schulz B, Feldmann KA (1996) Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism. Science 273: 948-950
6. Bhattacharya D, Medlin L (1998) Algal phylogeny and the origin of land plants. Plant Physiol 116: 9-15
7. Bierfreund NM, Reski R, Decker EL (2003) Use of an inducible reporter gene system for the analysis of auxin distribution in the moss Physcomitrella patens. Plant Cell Rep 21: 1143-1152
8. Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, Lindquist E, Lucas S, Pangilinan J, Polle J, et al (2010) The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell 22: 2943-2955
9. Chapman EJ, Estelle M (2009) Mechanism of auxin-regulated gene expression in plants. Annu Rev Genet 43: 265-285
10. Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, et al (2010) The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 465: 617-621
11. Cooke TJ, Poli D, Sztein AE, Cohen JD (2002) Evolutionary patterns in auxin action. Plant Mol Biol 49: 319-338
12. Costacurta A, Vanderleyden J (1995) Synthesis of phytohormones by plantassociated bacteria. Crit Rev Microbiol 21: 1-18
13. Derelle E, Ferraz C, Rombauts S, Rouze P, Worden AZ, Robbens S, Partensky F, Degroeve S, Echeynie S, Cooke R, et al (2006) Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci USA 103: 11647-11652
14. Feng DF, Doolittle RF (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J Mol Evol 25: 351-360
15. Friml J, Vieten A, Sauer M, Weijers D, Schwarz H, Hamann T, Offringa R, Jürgens G (2003) Efflux-dependent auxin gradients establish the apicalbasal axis of Arabidopsis. Nature 426: 147-153
16. Fujita T, Sakaguchi H, Hiwatashi Y, Wagstaff SJ, Ito M, Deguchi H, Sato T, Hasebe M (2008) Convergent evolution of shoots in land plants: lack of auxin polar transport in moss shoots. Evol Dev 10: 176-186
17. Gallavotti A, Yang Y, Schmidt RJ, Jackson D (2008) The relationship between auxin transport and maize branching. Plant Physiol 147: 1913-1923
18. Geisler M, Murphy AS (2006) The ABC of auxin transport: the role of p-glycoproteins in plant development. FEBS Lett 580: 1094-1102
19. Hao C, Chen SL, Mu J, Xiao PG (2009) Molecular phylogeny, long-term evolution, and functional divergence of flavin-containing monooxygenases. Genetica 137: 173-187
20. Harris EH (1989) The Chlamydomonas Sourcebook. Academic Press, San Diego
21. Hartung W (2010) The evolution of abscisic acid (ABA) and ABA function in lower plants, fungi and lichen. Funct Plant Biol 37: 806-812
22. Jackson RG, Kowalczyk M, Li Y, Higgins G, Ross J, Sandberg G, Bowles DJ (2002) Over-expression of an Arabidopsis gene encoding a glucosyltransferase of indole-3-acetic acid: phenotypic characterisation of transgenic lines. Plant J 32: 573-583
23. Jackson RG, Lim EK, Li Y, Kowalczyk M, Sandberg G, Hoggett J, Ashford DA, Bowles DJ (2001) Identification and biochemical characterization of an Arabidopsis indole-3-acetic acid glucosyltransferase. J Biol Chem 276: 4350-4356
24. Kerr ID, Bennett MJ (2007) New insight into the biochemical mechanisms regulating auxin transport in plants. Biochem J 401: 613-622
25. Kirk DL (1999) Evolution of multicellularity in the volvocine algae. Curr Opin Plant Biol 2: 496-501
26. Kirk DL, Nishii I (2001) Volvox carteri as a model for studying the genetic and cytological control of morphogenesis. Dev Growth Differ 43: 621-631
27. Křeček P, Skupa P, Libus J, Naramoto S, Tejos R, Friml J, Zazímalová E (2009) The PIN-FORMED (PIN) protein family of auxin transporters. Genome Biol 10: 249
28. Lang D, Zimmer AD, Rensing SA, Reski R (2008) Exploring plant biodiversity: the Physcomitrella genome and beyond. Trends Plant Sci 13: 542-549
29. Lau S, Jürgens G, De Smet I (2008) The evolving complexity of the auxin pathway. Plant Cell 20: 1738-1746
30. Lau S, Shao N, Bock R, Jürgens G, De Smet I (2009) Auxin signaling in algal lineages: fact or myth? Trends Plant Sci 14: 182-188
31. Le Bail A, Billoud B, Kowalczyk N, Kowalczyk M, Gicquel M, Le Panse S, Stewart S, Scornet D, Cock JM, Ljung K, et al (2010) Auxin metabolism and function in the multicellular brown alga Ectocarpus siliculosus. Plant Physiol 153: 128-144
32. Lee JH, Lee J (2010) Indole as an intercellular signal in microbial communities. FEMS Microbiol Rev 34: 426-444
33. Lehmann T, Hoffmann M, Hentrich M, Pollmann S (2010) Indole-3- acetamide-dependent auxin biosynthesis: a widely distributed way of indole-3-acetic acid production? Eur J Cell Biol 89: 895-905
34. Lewis LA, McCourt RM (2004) Green algae and the origin of land plants. Am J Bot 91: 1535-1556
35. Manuell AL, Mayfield SP (2006) A bright future for Chlamydomonas. Genome Biol 7: 327
36. Marchant A, Bhalerao R, Casimiro I, Eklöf J, Casero PJ, Bennett M, Sandberg G (2002) AUX1 promotes lateral root formation by facilitating indole-3-acetic acid distribution between sink and source tissues in the Arabidopsis seedling. Plant Cell 14: 589-597
37. McCourt RM, Delwiche CF, Karol KG (2004) Charophyte algae and land plant origins. Trends Ecol Evol 19: 661-666
38. Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Maréchal-Drouard L, et al (2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318: 245-250
39. Mikkelsen MD, Naur P, Halkier BA (2004) Arabidopsis mutants in the C-S lyase of glucosinolate biosynthesis establish a critical role for indole-3- acetaldoxime in auxin homeostasis. Plant J 37: 770-777
40. Mizutani M, Ohta D (2010) Diversification of P450 genes during land plant evolution. Annu Rev Plant Biol 61: 291-315
41. Mravec J, Skůpa P, Bailly A, Hoyerová K, Křeček P, Bielach A, Petrásek J, Zhang J, Gaykova V, Stierhof YD, et al (2009) Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter. Nature 459: 1136-1140
42. Normanly J (2010) Approaching cellular and molecular resolution of auxin biosynthesis andmetabolism. Cold Spring Harb Perspect Biol 2: a001594
43. Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, et al (2007) The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci USA 104: 7705-7710
44. Paponov IA, Teale W, Lang D, Paponov M, Reski R, Rensing SA, Palme K (2009) The evolution of nuclear auxin signalling. BMC Evol Biol 9: 126
45. Péret B, Swarup R, Jansen L, Devos G, Auguy F, Collin M, Santi C, Hocher V, Franche C, Bogusz D, et al (2007) Auxin influx activity is associated with Frankia infection during actinorhizal nodule formation in Casuarina glauca. Plant Physiol 144: 1852-1862
46. Petrásek J, Friml J (2009) Auxin transport routes in plant development. Development 136: 2675-2688
47. Petrásek J, Mravec J, Bouchard R, Blakeslee JJ, Abas M, Seifertová D, Wisniewska J, Tadele Z, Kubes M, Covanová M, et al (2006) PIN proteins perform a rate-limiting function in cellular auxin efflux. Science 312: 914-918
48. Pils B, Heyl A (2009) Unraveling the evolution of cytokinin signaling. Plant Physiol 151: 782-791
49. Qin G, Gu H, Zhao Y, Ma Z, Shi G, Yang Y, Pichersky E, Chen H, Liu M, Chen Z, et al (2005) An indole-3-acetic acid carboxyl methyltransferase regulates Arabidopsis leaf development. Plant Cell 17: 2693-2704
50. Quint M, Barkawi LS, Fan KT, Cohen JD, Gray WM (2009) Arabidopsis IAR4 modulates auxin response by regulating auxin homeostasis. Plant Physiol 150: 748-758
51. Rea PA (2007) Plant ATP-binding cassette transporters. Annu Rev Plant Biol 58: 347-375
52. Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, et al (2008) The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319: 64-69
53. Romanel EA, Schrago CG, Couñago RM, Russo CA, Alves-Ferreira M (2009) Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification. PLoS ONE 4: e5791
54. Ross J, Li Y, Lim E, Bowles DJ (2001) Higher plant glycosyltransferases. Genome Biol 2: S3004
55. Ross JJ, Reid JB (2010) Evolution of growth-promoting plant hormones. Funct Plant Biol 37: 795-805
56. Schmitt R (2003) Differentiation of germinal and somatic cells in Volvox carteri. Curr Opin Microbiol 6: 608-613
57. Shao N, Bock R (2008) A codon-optimized luciferase from Gaussia princeps facilitates the in vivo monitoring of gene expression in the model alga Chlamydomonas reinhardtii. Curr Genet 53: 381-388
58. Spaepen S, Vanderleyden J, Remans R (2007) Indole-3-acetic acid in microbial and microorganism-plant signaling. FEMS Microbiol Rev 31: 425-448
59. Staswick PE, Serban B, Rowe M, Tiryaki I, Maldonado MT, Maldonado MC, Suza W (2005) Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Plant Cell 17: 616-627
60. Stepanova AN, Robertson-Hoyt J, Yun J, Benavente LM, Xie DY, Dolezal
61. K, Schlereth A, Jürgens G, Alonso JM (2008) TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development. Cell 133: 177-191
62. Swarup K, Benková E, Swarup R, Casimiro I, Péret B, Yang Y, Parry G, Nielsen E, De Smet I, Vanneste S, et al (2008) The auxin influx carrier LAX3 promotes lateral root emergence. Nat Cell Biol 10: 946-954
63. Swarup R, Kargul J, Marchant A, Zadik D, Rahman A, Mills R, Yemm A, May S, Williams L, Millner P, et al (2004) Structure-function analysis of the presumptive Arabidopsis auxin permease AUX1. Plant Cell 16: 3069-3083
64. Sztein AE, Cohen JD, Cooke TJ (2000) Evolutionary patterns in the auxin metabolism of green plants. Int J Plant Sci 161: 849-859
65. Timme RE, Delwiche CF (2010) Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes. BMC Plant Biol 10: 96
66. Tromas A, Paponov I, Perrot-Rechenmann C (2010) AUXIN BINDING PROTEIN 1: functional and evolutionary aspects. Trends Plant Sci 15: 436-446
67. Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ (1997) Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9: 1963-1971
68. Vanneste S, Friml J (2009) Auxin: a trigger for change in plant development. Cell 136: 1005-1016
69. Verrier PJ, Bird D, Burla B, Dassa E, Forestier C, Geisler M, Klein M, Kolukisaoglu U, Lee Y, Martinoia E, et al (2008) Plant ABC proteins: a unified nomenclature and updated inventory. Trends Plant Sci 13: 151-159
70. Vieten A, Sauer M, Brewer PB, Friml J (2007) Molecular and cellular aspects of auxin-transport-mediated development. Trends Plant Sci 12: 160-168
71. Weijers D, Schlereth A, Ehrismann JS, Schwank G, Kientz M, Jürgens G (2006) Auxin triggers transient local signaling for cell specification in Arabidopsis embryogenesis. Dev Cell 10: 265-270
72. Wijffels RH, Barbosa MJ (2010) An outlook on microalgal biofuels. Science 329: 796-799
73. Woodward AW, Bartel B (2005) Auxin: regulation, action, and interaction. Ann Bot (Lond) 95: 707-735
74. Worden AZ, Lee JH, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, et al (2009) Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 324: 268-272
75. Yamamoto Y, Kamiya N, Morinaka Y, Matsuoka M, Sazuka T (2007) Auxin biosynthesis by the YUCCA genes in rice. Plant Physiol 143: 1362-1371
76. Yang H, Murphy AS (2009) Functional expression and characterization of Arabidopsis ABCB, AUX 1 and PIN auxin transporters in Schizosaccharomyces pombe. Plant J 59: 179-191
77. Yang Y, Hammes UZ, Taylor CG, Schachtman DP, Nielsen E (2006) Highaffinity auxin transport by the AUX1 influx carrier protein. Curr Biol 16: 1123-1127
78. Zhao Y (2008) The role of local biosynthesis of auxin and cytokinin in plant development. Curr Opin Plant Biol 11: 16-22
79. Zhao Y (2010) Auxin biosynthesis and its role in plant development. Annu Rev Plant Biol 61: 49-64
80. Zhao Y, Christensen SK, Fankhauser C, Cashman JR, Cohen JD, Weigel D, Chory J (2001) A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science 291: 306-309