Visualizing active-site dynamics in single crystals of HePTP: Opening of the WPD loop involves coordinated movement of the e loop

Journal of Molecular Biology

Volumn 405, Issue 3, 2011, Pages 619-629

  Critton, David A ^a   Tautz, Lutz ^b   Page, Rebecca ^a  

^a BROWN UNIVERSITY   (United States)

^b BURNHAM INSTITUTE   (United States)

Author keywords

E loop; hematopoietic PTP; kinase interaction motif PTP; PTPN7; WPD loop

Indexed keywords

HEMATOPOIETIC PROTEIN TYROSINE PHOSPHATASE; LIGAND; PROTEIN TYROSINE PHOSPHATASE; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CATALYSIS; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME ACTIVITY; HUMAN; PRIORITY JOURNAL; PROTEIN INTERACTION; PROTEIN STRUCTURE;

EID: 78650924311     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2010.11.020     Document Type: Article

References (36)

1. Blaskovich M.A. Drug discovery and protein tyrosine phosphatases Curr. Med. Chem. 16 2009 2095 20176
2. Jiang Z.X., and Zhang Z.Y. Targeting PTPs with small molecule inhibitors in cancer treatment Cancer Metastasis Rev. 27 2008 263 272
3. Ostman A., Hellberg C., and Bohmer F.D. Protein-tyrosine phosphatases and cancer Nat. Rev. Cancer 6 2006 307 320
4. Tautz L., Pellecchia M., and Mustelin T. Targeting the PTPome in human disease Expert Opin. Ther. Targets 10 2006 157 177
5. Tonks N.K. Protein tyrosine phosphatases: from genes, to function, to disease Nat. Rev. Mol. Cell Biol. 7 2006 833 846
6. Barr A.J., Ugochukwu E., Lee W.H., King O.N., Filippakopoulos P., and Alfano I. Large-scale structural analysis of the classical human protein tyrosine phosphatome Cell 136 2009 352 363
7. Andersen J.N., Mortensen O.H., Peters G.H., Drake P.G., Iversen L.F., and Olsen O.H. Structural and evolutionary relationships among protein tyrosine phosphatase domains Mol. Cell. Biol. 21 2001 7117 7136
8. Barford D., Flint A.J., and Tonks N.K. Crystal structure of human protein tyrosine phosphatase 1B Science 263 1994 1397 1404
9. Eswaran J., von Kries J.P., Marsden B., Longman E., Debreczeni J.E., and Ugochukwu E. Crystal structures and inhibitor identification for PTPN5, PTPRR and PTPN7: a family of human MAPK-specific protein tyrosine phosphatases Biochem. J. 395 2006 483 491
10. Mustelin T., Tautz L., and Page R. Structure of the hematopoietic tyrosine phosphatase (HePTP) catalytic domain: structure of a KIM phosphatase with phosphate bound at the active site J. Mol. Biol. 354 2005 150 163
11. Pedersen A.K., Peters G.G., Moller K.B., Iversen L.F., and Kastrup J.S. Water-molecule network and active-site flexibility of apo protein tyrosine phosphatase 1B Acta Crystallogr. Sect. D 60 2004 1527 1534
12. Stuckey J.A., Schubert H.L., Fauman E.B., Zhang Z.Y., Dixon J.E., and Saper M.A. Crystal structure of Yersinia protein tyrosine phosphatase at 2.5 Å and the complex with tungstate Nature 370 1994 571 575
13. Zhang Z.Y., Wang Y., and Dixon J.E. Dissecting the catalytic mechanism of protein-tyrosine phosphatases Proc. Natl Acad. Sci. USA 91 1994 1624 1627
14. Zhang Z.Y., and Wu L. The single sulfur to oxygen substitution in the active site nucleophile of the Yersinia protein-tyrosine phosphatase leads to substantial structural and functional perturbations Biochemistry 36 1997 1362 1369 (Pubitemid 27074960)
15. Jia Z., Barford D., Flint A.J., and Tonks N.K. Structural basis for phosphotyrosine peptide recognition by protein tyrosine phosphatase 1B Science 268 1995 1754 1758
16. Neel B.G., and Tonks N.K. Protein tyrosine phosphatases in signal transduction Curr. Opin. Cell. Biol. 9 1997 193 204
17. Critton D.A., Tortajada A., Stetson G., Peti W., and Page R. Structural basis of substrate recognition by hematopoietic tyrosine phosphatase Biochemistry 47 2008 13336 13345
18. DeLano W.L. The PyMOL Molecular Graphics System 2002 DeLano Scientific Palo Alto, CA
19. Chik J.K., Lindberg U., and Schutt C.E. The structure of an open state of beta-actin at 2.65 Å resolution J. Mol. Biol. 263 1996 607 623
20. Schutt C.E., Myslik J.C., Rozycki M.D., Goonesekere N.C., and Lindberg U. The structure of crystalline profilin-beta-actin Nature 365 1993 810 816
21. Saxena M., Williams S., Brockdorff J., Gilman J., and Mustelin T. Inhibition of T cell signaling by mitogen-activated protein kinase-targeted hematopoietic tyrosine phosphatase (HePTP) J. Biol. Chem. 274 1999 11693 11700
22. Robbins D.J., Zhen E., Owaki H., Vanderbilt C.A., Ebert D., Geppert T.D., and Cobb M.H. Regulation and properties of extracellular signal-regulated protein kinases 1 and 2 in vitro J. Biol. Chem. 268 1993 5097 5106
23. Shen K., Hines A.C., Schwarzer D., Pickin K.A., and Cole P.A. Protein kinase structure and function analysis with chemical tools Biochim. Biophys. Acta 1754 2005 65 78
24. Peti W., and Page R. Strategies to maximize heterologous protein expression in Escherichia coli with minimal cost Protein Expression Purif. 51 2007 1 10
25. Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. Part A 276 1997 307 326
26. Murshudov G.N., Vagin A.A., and Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method Acta Crystallogr. Sect. D 53 1997 240 255
27. Emsley P., and Cowtan K. Coot: model-building tools for molecular graphics Acta Crystallogr. Sect. D 60 2004 2126 2132
28. Lovell S.C., Davis I.W., Arendall W.B. III, de Bakker P.I., Word J.M., and Prisant M.G. Structure validation by Calpha geometry: phi,psi and Cbeta deviation Proteins 50 2003 437 450
29. Vaguine A.A., Richelle J., and Wodak S.J. SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model Acta Crystallogr. Sect. D 55 1999 191 205
30. Evdokimov A.G., Pokross M., Walter R., Mekel M., Cox B., and Li C. Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery Acta Crystallogr. Sect. D 62 2006 1435 1445
31. Almo S.C., Bonanno J.B., Sauder J.M., Emtage S., Dilorenzo T.P., and Malashkevich V. Structural genomics of protein phosphatases J. Struct. Funct. Genomics 8 2007 121 140
32. Villa F., Deak M., Bloomberg G.B., Alessi D.R., and van Aalten D.M. Crystal structure of the PTPL1/FAP-1 human tyrosine phosphatase mutated in colorectal cancer: evidence for a second phosphotyrosine substrate recognition pocket J. Biol. Chem. 280 2005 8180 8187
33. Li S., Depetris R.S., Barford D., Chernoff J., and Hubbard S.R. Crystal structure of a complex between protein tyrosine phosphatase 1B and the insulin receptor tyrosine kinase Structure 13 2005 1643 1651
34. Salmeen A., Andersen J.N., Myers M.P., Tonks N.K., and Barford D. Molecular basis for the dephosphorylation of the activation segment of the insulin receptor by protein tyrosine phosphatase 1B Mol. Cell 6 2000 1401 1412
35. Tsai S.J., Sen U., Zhao L., Greenleaf W.B., Dasgupta J., and Fiorillo E. Crystal structure of the human lymphoid tyrosine phosphatase catalytic domain: insights into redox regulation Biochemistry 48 2009 4838 4845
36. Asante-Appiah E., Patel S., Desponts C., Taylor J.M., Lau C., and Dufresne C. Conformation-assisted inhibition of protein-tyrosine phosphatase-1B elicits inhibitor selectivity over T-cell protein-tyrosine phosphatase J. Biol. Chem. 281 2006 8010 8015