Identification of a novel protein, PriB, in Klebsiella pneumoniae

Biochemical and Biophysical Research Communications

Volumn 404, Issue 1, 2011, Pages 546-551

  Hsieh, Hui Chuan ^a   Huang, Cheng Yang ^a,b  

^a CHUNG SHAN MEDICAL UNIVERSITY   (Taiwan)

^b CHUNG SHAN MEDICAL UNIVERSITY HOSPITAL   (Taiwan)

Author keywords

PriA; PriB; Primosome; SSB; SsDNA binding

Indexed keywords

ALANINE; BACTERIAL PROTEIN; HOMODIMER; MONOMER; POLYPEPTIDE; PRIB PROTEIN; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARTICLE; BINDING AFFINITY; BINDING ASSAY; DNA BINDING; ESCHERICHIA COLI; FILTER; KLEBSIELLA PNEUMONIAE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DNA INTERACTION; PROTEIN EXPRESSION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; DNA, SINGLE-STRANDED; KLEBSIELLA PNEUMONIAE; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY;

ESCHERICHIA COLI; KLEBSIELLA PNEUMONIAE;

EID: 78650901944     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2010.12.023     Document Type: Article

References (30)

1. Heller R.C., Marians K.J. Replisome assembly and the direct restart of stalled replication forks. Nat. Rev. Mol. Cell Biol. 2006, 7:932-943.
2. Cox M.M., Goodman M.F., Kreuzer K.N., Sherratt D.J., Sandler S.J., Marians K.J. The importance of repairing stalled replication forks. Nature 2000, 404:37-41.
3. McGlynn P., Lloyd R.G. Recombinational repair and restart of damaged replication forks. Nat. Rev. Mol. Cell Biol. 2002, 3:859-870.
4. Sandler S.J., Marians K.J. Role of PriA in replication fork reactivation in Escherichia coli. J. Bacteriol. 2000, 182:9-13.
5. Marians K.J. PriA-directed replication fork restart in Escherichia coli. Trends Biochem. Sci. 2000, 25:185-189.
6. Masai H., Tanaka T., Kohda D. Stalled replication forks: making ends meet for recognition and stabilization. Bioessays 2010, 32:687-697.
7. Gabbai C.B., Marians K.J. Recruitment to stalled replication forks of the PriA DNA helicase and replisome-loading activities is essential for survival. DNA Repair (Amst.) 2010, 9:202-209.
8. Heller R.C., Marians K.J. Replication fork reactivation downstream of a blocked nascent leading strand. Nature 2006, 439:557-562.
9. Lopper M., Boonsombat R., Sandler S.J., Keck J.L. A hand-off mechanism for primosome assembly in replication restart. Mol. Cell 2007, 26:781-793.
10. Cadman C.J., Lopper M., Moon P.B., Keck J.L., McGlynn P. PriB stimulates PriA helicase via an interaction with single-stranded DNA. J. Biol. Chem. 2005, 280:39693-39700.
11. Liu J., Nurse P., Marians K.J. The ordered assembly of the phiX174-type primosome. III. PriB facilitates complex formation between PriA and DnaT. J. Biol. Chem. 1996, 271:15656-15661.
12. Lo Y.H., Tsai K.L., Sun Y.J., Chen W.T., Huang C.Y., Hsiao C.D. The crystal structure of a replicative hexameric helicase DnaC and its complex with single-stranded DNA. Nucleic Acids Res. 2009, 37:804-814.
13. Bailey S., Eliason W.K., Steitz T.A. Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase. Science 2007, 318:459-463.
14. Tougu K., Peng H., Marians K.J. Identification of a domain of Escherichia coli primase required for functional interaction with the DnaB helicase at the replication fork. J. Biol. Chem. 1994, 269:4675-4682.
15. Dong J., George N.P., Duckett K.L., DeBeer M.A., Lopper M.E. The crystal structure of Neisseria gonorrhoeae PriB reveals mechanistic differences among bacterial DNA replication restart pathways. Nucleic Acids Res. 2010, 38:499-509.
16. Shioi S., Ose T., Maenaka K., Shiroishi M., Abe Y., Kohda D., Katayama T., Ueda T. Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site. Biochem. Biophys. Res. Commun. 2005, 326:766-776.
17. Lopper M., Holton J.M., Keck J.L. Crystal structure of PriB, a component of the Escherichia coli replication restart primosome. Structure 2004, 12:1967-1975.
18. Liu J.H., Chang T.W., Huang C.Y., Chen S.U., Wu H.N., Chang M.C., Hsiao C.D. Crystal structure of PriB, a primosomal DNA replication protein of Escherichia coli. J. Biol. Chem. 2004, 279:50465-50471.
19. Theobald D.L., Mitton-Fry R.M., Wuttke D.S. Nucleic acid recognition by OB-fold proteins. Annu. Rev. Biophys. Biomol. Struct. 2003, 32:115-133.
20. Murzin A.G. OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences. EMBO J. 1993, 12:861-867.
21. Huang C.Y., Hsu C.H., Sun Y.J., Wu H.N., Hsiao C.D. Complexed crystal structure of replication restart primosome protein PriB reveals a novel single-stranded DNA-binding mode. Nucleic Acids Res. 2006, 34:3878-3886.
22. Szymanski M.R., Jezewska M.J., Bujalowski W. Interactions of the Escherichia coli primosomal PriB protein with the single-stranded DNA. Stoichiometries, intrinsic affinities, cooperativities, and base specificities. J. Mol. Biol. 2010, 398:8-25.
23. Chan K.W., Lee Y.J., Wang C.H., Huang H., Sun Y.J. Single-stranded DNA-binding protein complex from Helicobacter pylori suggests an ssDNA-binding surface. J. Mol. Biol. 2009, 388:508-519.
24. Raghunathan S., Kozlov A.G., Lohman T.M., Waksman G. Structure of the DNA binding domain of E. coli SSB bound to ssDNA. Nat. Struct. Biol. 2000, 7:648-652.
25. Wang C.C., Tsau H.W., Chen W.T., Huang C.Y. Identification and characterization of a putative dihydroorotase, KPN01074, from Klebsiella pneumoniae. Protein J. 2010, 29:445-452.
26. Huang C.Y., Chang Y.W., Chen W.T. Crystal structure of the N-terminal domain of Geobacillus kaustophilus HTA426 DnaD protein. Biochem. Biophys. Res. Commun. 2008, 375:220-224.
27. Wong I., Lohman T.M. A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions. Proc. Natl. Acad. Sci. USA 1993, 90:5428-5432.
28. Abbani M., Iwahara M., Clubb R.T. The structure of the excisionase (Xis) protein from conjugative transposon Tn916 provides insights into the regulation of heterobivalent tyrosine recombinases. J. Mol. Biol. 2005, 347:11-25.
29. Madden T.L., Tatusov R.L., Zhang J. Applications of network BLAST server. Methods Enzymol. 1996, 266:131-141.
30. Lohman T.M., Ferrari M.E. Escherichia coli single-stranded DNA-binding protein: multiple DNA-binding modes and cooperativities. Annu. Rev. Biochem. 1994, 63:527-570.