Crystal structure of PriB, a primosomal DNA replication protein of Escherichia coli

Journal of Biological Chemistry

Volumn 279, Issue 48, 2004, Pages 50465-50471

  Liu, Jyung Hurng ^a,b   Chang, Tsai Wang ^c   Huang, Cheng Yang ^b   Chen, Sue Une ^b   Wu, Huey Nan ^b   Chang, Ming Chung ^c   Hsiao, Chwan Deng ^b  

^a NATIONAL DEFENSE MEDICAL CENTER   (Taiwan)

^b INSTITUTE OF MOLECULAR BIOLOGY   (Taiwan)

^c NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; DNA; PROTEINS; RNA;

DNA REPLICATION; MULTI-ENZYME COMPLEX; PRIMOSOME; TETRAMER FORMATION;

ESCHERICHIA COLI;

DIMER; ESCHERICHIA COLI PROTEIN; MERCURY; POLYPEPTIDE; PRIB PROTEIN; SINGLE STRANDED DNA BINDING PROTEIN; TETRAMER; UNCLASSIFIED DRUG;

ARTICLE; CRYSTAL STRUCTURE; DIFFRACTION; DNA REPLICATION; GEL MOBILITY SHIFT ASSAY; PRIORITY JOURNAL; PROTEIN DNA BINDING;

AMINO ACID SEQUENCE; CYSTEINE; DIMERIZATION; DNA REPLICATION; DNA-BINDING PROTEINS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 9644264027     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M406773200     Document Type: Article

References (59)

1. Schekman, R., Weiner, A., and Kornberg, A. (1974) Science 186, 987-993
2. Kornberg, A., and Baker, T. (1992) DNA Replication, 2nd Ed., pp. 275-306, W. H. Freeman & Co., New York
3. Wickner, S., and Hurwitz, J. (1974) Proc. Natl. Acad. Sci. U. S. A. 71, 4120-4124
4. Minden, J. S., and Marians, K. J. (1985) J. Biol. Chem. 260, 9316-9325
5. Marians, K. J. (1999) Prog. Nucleic Acids Res. Mol. Biol. 63, 39-67
6. Marians, K. J. (2000) Trends Biochem. Sci. 25, 185-189
7. Sandler, S. J., and Marians, K. J. (2000) J. Bacteriol. 182, 9-13
8. Cox, M. M., Goodman, M. F., Kreuzer, K. N., Sherratt, D. J., Sandler, S. J., and Marians, K. J. (2000) Nature 404, 37-41
9. McGlynn, P., Al-Deib, A. A., Liu, J., Marians, K. J., and Lloyd, R. G. (1997) J. Mol. Biol. 270, 212-221
10. Liu, J., and Marians, K. J. (1999) J. Biol. Chem. 274, 25033-25041
11. Liu, J., Xu, L., Sandler, S. J., and Marians, K. J. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 3552-3555
12. Xu, L., and Marians, K. J. (2003) Mol. Cell. 11, 817-826
13. Low, R. L., Shlomai, J., and Kornberg, A. (1982) J. Biol. Chem. 257, 6242-6250
14. Allen, G. C., Jr., and Kornberg, A. (1991) J. Biol. Chem. 266, 11610-11613
15. Zavitz, K. H., DiGate, R. J., and Marians, K. J. (1991) J. Biol. Chem. 266, 13988-13995
16. Ng, J. Y., and Marians, K. J. (1996) J. Biol. Chem. 271, 15642-15648
17. Tougu, K., Peng, H., and Marians, K. J. (1994) J. Biol. Chem. 269, 4675-4682
18. Ng, J. Y., and Marians, K. J. (1996) J. Biol. Chem. 271, 15649-15655
19. Liu, J., Nurse, P., and Marians, K. J. (1996) J. Biol. Chem. 271, 15656-15661
20. Sandler, S. J., Marians, K. J., Zavitz, K. H., Coutu, J., Parent, M. A., and Clark, A. J. (1999) Mol. Microbiol. 34, 91-101
21. Sandler, S. J., McCool, J. D., Do, T. T., and Johansen, R. U. (2001) Mol. Microbiol. 41, 697-704
22. Flores, M. J., Ehrlich, S. D., and Michel, B. (2002) Mol. Microbiol. 44, 783-792
23. Berges, H., Oreglia, J., Joseph-Liauzun, E., and Fayet, O. (1997) J. Bacteriol. 179, 956-958
24. Harinarayanan, E., and Gowrishankar, J. (2004) Genetics 166, 1165-1176
25. Allen, G. C., Jr., and Kornberg, A. (1993) J. Biol. Chem. 268, 19204-19209
26. Ponomarev, V. A., Makarova, K. S., Aravind, L., and Koonin, E. V. (2003) J. Mol. Microbiol Biotechnol. 5, 225-229
27. Meyer, R. R., and Laine, P. S. (1990) Microbiol. Rev. 54, 342-380
28. Hendrickson, W. A. (1991) Science 254, 51-58
29. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
30. Terwilliger, T. C., and Berendzen, J. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 849-861
31. Terwilliger, T. C. (2003) Acta Crystallogr. Sect. D Biol. Crystallogr. 59, 38-44
32. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165
33. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, E. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
34. Fairall, L., Buttinelli, M., and Panetta, G. (2000) in DNA-Protein Interactions: A Practical Approach (Travers, A., and Buckle, M., eds) pp. 65-74, Oxford University Press, New York
35. Murzin, A. G. (1993) EMBO J. 12, 861-867
36. Raghunathan, S., Ricard, C. S., Lohman, T. M., and Waksman, G. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 6652-6657
37. Yang, C., Curth, U., Urbanke, C., and Kang, C. (1997) Nat. Struct. Biol. 4, 153-157
38. Saikrishnan, K., Jeyakanthan, J., Venkatesh, J., Acharya, N., Sekar, K., Varshney, U., and Vijayan, M. (2003) J. Mol. Biol. 331, 385-393
39. Curth, U., Urbanke, C., Greipel, J., Gerberding, H., Tiranti, V., and Zeviani, M. (1994) Eur. J. Biochem. 221, 435-443
40. Raghunathan, S., Kozlov, A. G., Lohman, T. M., and Waksman, G. (2000) Nat. Struct. Biol. 7, 648-652
41. Matsumoto, T., Morimoto, Y., Shibata, N., Kinebuchi, T., Shimamoto, N., Tsukihara, T., and Yasuoka, N. (2000) J. Biochem. (Tokyo) 127, 329-335
42. Webster, G., Genschel, J., Curth, U., Urbanke, C., Kang, C., and Hilgenfeld, R. (1997) FEBS Lett. 411, 313-316
43. De Vries, J., Genschel, J., Urbanke, C., Thole, H., and Wackernagel, W. (1994) Eur. J. Biochem. 224, 613-622
44. Lohman, T. M., and Overman, L. B. (1985) J. Biol. Chem. 260, 3594-3603
45. Bujalowski, W., and Lohman, T. M. (1986) Biochemistry 25, 7799-7802
46. Overman, L. B., Bujalowski, W., and Lohman, T. M. (1988) Biochemistry 27, 456-471
47. Bobst, E. V., Perrino, F. W., Meyer, R. R., and Bobst, A. M. (1991) Biochim. Biophys. Acta 1078, 199-207
48. Arai, K., McMacken, R., Yasuda, S., and Kornberg, A. (1981) J. Biol. Chem. 256, 5281-5286
49. Jordan, I. K., Makarova, K. S., Spouge, J. L., Wolf, Y. I., and Koonin, E. V. (2001) Genome Res. 11, 555-565
50. Lynch, M., and Conery, J. S. (2000) Science 290, 1151-1155
51. Greipel, J., Urbanke, C., and Maass, G. (1989) in Protein-Nucleic Acid Interaction (Saenger, W., and Heinemann, U., eds) pp. 61-86, Macmillan Press, London
52. Curth, U., Genschel, J., Urbanke, C., and Greipel, J. (1996) Nucleic Acids Res. 24, 2706-2711
53. Eguchi, Y., Itoh, T., and Tomizawa, J. (1991) Annu. Rev. Biochem. 60, 631-652
54. Zavitz, K. H., and Marians, K. J. (1993) J. Biol. Chem. 268, 4337-4346
55. Ishmael, F. T., Alley, S. C., and Benkovic, S. J. (2001) J. Biol. Chem. 276, 25236-25242
56. Nishi, T., Shimizu, N., Hiramoto, M., Sato, I., Yamaguchi, Y., Hasegawa, M., Aizawa, S., Tanaka, H., Kataoka, K., Watanabe, H., and Handa, H. (2002) J. Biol. Chem. 277, 44548-44556
57. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
58. Sanner, M. F., Olson, A. J., and Spehner, J. C. (1996) Biopolymers 38, 305-320
59. Bashford, D., and Gerwert, K (1992) J. Mol. Biol. 224, 473-486