메뉴 건너뛰기




Volumn 1 SEP, Issue , 2010, Pages

Functional relationships between genes associated with differentiation potential of aged myogenic progenitors

Author keywords

Aged myogenic progenitor differentiation; Bayesian structure learning; functional relationships

Indexed keywords


EID: 78650875469     PISSN: None     EISSN: 1664042X     Source Type: Journal    
DOI: 10.3389/fphys.2010.00021     Document Type: Article
Times cited : (13)

References (51)
  • 5
    • 34547924424 scopus 로고    scopus 로고
    • Increased Wnt signaling during aging alters muscle stem cell fate and increases fibrosis
    • Brack, A. S. Conboy, M. J., Roy, S., Lee, M., Kuo, C. J., Keller, C., and Rando, T. A. (2007). Increased Wnt signaling during aging alters muscle stem cell fate and increases fibrosis. Science 317, 807-810.
    • (2007) Science , vol.317 , pp. 807-810
    • Brack, A.S.1    Conboy, M.J.2    Roy, S.3    Lee, M.4    Kuo, C.J.5    Keller, C.6    Rando, T.A.7
  • 6
    • 34047109098 scopus 로고    scopus 로고
    • Beta catenin-independent activation of MyoD in presomitic mesoderm requires PKC and depends on Pax3 transcriptional activity
    • Brunelli, S., Relaix, F., Baesso, S., Buckingham, M., and Cossu, G. (2007). Beta catenin-independent activation of MyoD in presomitic mesoderm requires PKC and depends on Pax3 transcriptional activity. Dev. Biol. 304, 604-614.
    • (2007) Dev. Biol , vol.304 , pp. 604-614
    • Brunelli, S.1    Relaix, F.2    Baesso, S.3    Buckingham, M.4    Cossu, G.5
  • 7
    • 0038740696 scopus 로고    scopus 로고
    • Fusion with the fused: a new role for interleukin-4 in the building of muscle
    • Chargé, S., and Rudnicki, M. A. (2003). Fusion with the fused: a new role for interleukin-4 in the building of muscle. Cell 113, 422-423.
    • (2003) Cell , vol.113 , pp. 422-423
    • Chargé, S.1    Rudnicki, M.A.2
  • 10
    • 66249120015 scopus 로고    scopus 로고
    • Patterns of Wnt/Fzd/LRP gene expression during embryonic hematopoiesis
    • Corrigan, P. M., Dobbin, E., Freeburn, R. W., and Wheadon, H. (2009). Patterns of Wnt/Fzd/LRP gene expression during embryonic hematopoiesis. Stem Cells Dev. 18, 759-772.
    • (2009) Stem Cells Dev , vol.18 , pp. 759-772
    • Corrigan, P.M.1    Dobbin, E.2    Freeburn, R.W.3    Wheadon, H.4
  • 11
    • 5644278855 scopus 로고    scopus 로고
    • The forkhead transcription factor FoxC2 inhibits white adipocyte differentiation
    • Davis, K. E. Moldes, M., and Farmer, S. R. (2004). The forkhead transcription factor FoxC2 inhibits white adipocyte differentiation. J. Biol. Chem. 279, 42453-42461.
    • (2004) J. Biol. Chem , vol.279 , pp. 42453-42461
    • Davis, K.E.1    Moldes, M.2    Farmer, S.R.3
  • 12
    • 23644446750 scopus 로고    scopus 로고
    • Expression of CD68 and macrophage chemoattractant protein-1 genes in human adipose and muscle tissues: association with cytokine expression, insulin resistance, and reduction by pioglitazone
    • Di Gregorio, G. B., Yao-Borengasser, A., Rasouli, N., Varma, V., Lu, T., Miles, L. M., Ranganathan, G., Peterson, C. A., McGehee, R. E., and Kern, P. A. (2005). Expression of CD68 and macrophage chemoattractant protein-1 genes in human adipose and muscle tissues: association with cytokine expression, insulin resistance, and reduction by pioglitazone. Diabetes 54, 2305-2313.
    • (2005) Diabetes , vol.54 , pp. 2305-2313
    • Di Gregorio, G.B.1    Yao-Borengasser, A.2    Rasouli, N.3    Varma, V.4    Lu, T.5    Miles, L.M.6    Ranganathan, G.7    Peterson, C.A.8    McGehee, R.E.9    Kern, P.A.10
  • 16
    • 0033707946 scopus 로고    scopus 로고
    • Using Bayesian networks to analyze expression data
    • Friedman, N., Goldszmidt, M., and Wyner, A. (2000). Using Bayesian networks to analyze expression data. J. Comput. Biol. 7, 601-620.
    • (2000) J. Comput. Biol , vol.7 , pp. 601-620
    • Friedman, N.1    Goldszmidt, M.2    Wyner, A.3
  • 17
    • 0038048325 scopus 로고    scopus 로고
    • Inferring genetic networks and identifying compound of action via expression profiling
    • Gardner, T. S., di Bernardo, D., Lorenz, D., and Collins, J. J. (2003). Inferring genetic networks and identifying compound of action via expression profiling. Science 301, 102-1005.
    • (2003) Science , vol.301 , pp. 102-1005
    • Gardner, T.S.1    di Bernardo, D.2    Lorenz, D.3    Collins, J.J.4
  • 19
    • 0036392159 scopus 로고    scopus 로고
    • p130/ p107 expression distinguishes adipogenic potential in primary myoblasts based on age
    • Guan, Y., Taylor-Jones, J. M., Peterson, C. A., and McGehee, R. E. Jr. (2002). p130/ p107 expression distinguishes adipogenic potential in primary myoblasts based on age. Biochem. Biophys. Res. Commun. 296, 1340-1345.
    • (2002) Biochem. Biophys. Res. Commun , vol.296 , pp. 1340-1345
    • Guan, Y.1    Taylor-Jones, J.M.2    Peterson, C.A.3    McGehee Jr., R.E.4
  • 21
    • 0028871780 scopus 로고
    • Transdifferentiation of myoblasts by the adipogenic transcription factors PPARγ and C/EBPα
    • Hu, E., Tontonoz, P., and Spiegelman, B. M. (1995). Transdifferentiation of myoblasts by the adipogenic transcription factors PPARγ and C/EBPα. Proc. Natl. Acad. Sci. U.S.A. 92, 9856-9860.
    • (1995) Proc. Natl. Acad. Sci. U.S.A , vol.92 , pp. 9856-9860
    • Hu, E.1    Tontonoz, P.2    Spiegelman, B.M.3
  • 22
    • 0344464762 scopus 로고    scopus 로고
    • Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
    • Husmeier, D. (2003). Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks. Bioinformatics 19, 2271-2282.
    • (2003) Bioinformatics , vol.19 , pp. 2271-2282
    • Husmeier, D.1
  • 23
    • 19544379881 scopus 로고    scopus 로고
    • Stochasticity in gene expression: from theories to phenotypes
    • Kaern, M., Elston, T. C., Blake, W. J., and Collins, J. J. (2005). Stochasticity in gene expression: from theories to phenotypes. Nat. Rev. Genet. 6, 451-464.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 451-464
    • Kaern, M.1    Elston, T.C.2    Blake, W.J.3    Collins, J.J.4
  • 24
    • 84865982796 scopus 로고    scopus 로고
    • pcalg: Estimating the skeleton and equivalence class of a DAG
    • 0.1-8 (CRAN)
    • Kalisch, M., and Maechler, M. (2009). pcalg: Estimating the skeleton and equivalence class of a DAG. R Package Version 0.1-8 (CRAN).
    • (2009) R Package Version
    • Kalisch, M.1    Maechler, M.2
  • 26
  • 27
    • 0001006209 scopus 로고
    • Local computations with probabilities on graphical structures and their application to expert systems
    • Lauritzen, S. L., and Spiegelhalter, D. J. (1988). Local computations with probabilities on graphical structures and their application to expert systems. J. R. Stat. Soc. B 5, 157-224.
    • (1988) J. R. Stat. Soc. B , vol.5 , pp. 157-224
    • Lauritzen, S.L.1    Spiegelhalter, D.J.2
  • 28
    • 0034350102 scopus 로고    scopus 로고
    • Comparison of permutation methods for the partial correlation and partial Mantel tests
    • Legendre, P. (2000). Comparison of permutation methods for the partial correlation and partial Mantel tests. J. Stat. Comput. Simul. 67, 37-73.
    • (2000) J. Stat. Comput. Simul , vol.67 , pp. 37-73
    • Legendre, P.1
  • 30
    • 0036098242 scopus 로고    scopus 로고
    • Tissue stem cells: definition, plasticity, heterogeneity, self-organization and models - a conceptual approach
    • Loeffler, M., and Roeder, I. (2002). Tissue stem cells: definition, plasticity, heterogeneity, self-organization and models - a conceptual approach. Cells Tissues Organs (Print) 1717, 8-26.
    • (2002) Cells Tissues Organs (Print) , vol.1717 , pp. 8-26
    • Loeffler, M.1    Roeder, I.2
  • 31
    • 0036254463 scopus 로고    scopus 로고
    • Modeling stem cell development by retrospective analysis of gene expression profiles in single progenitor-derived colonies
    • Madras, N. Gibbs, A. L., Zhou, Y., and Zandstra, P. W. (2002). Modeling stem cell development by retrospective analysis of gene expression profiles in single progenitor-derived colonies. Stem Cells 20, 230-240.
    • (2002) Stem Cells , vol.20 , pp. 230-240
    • Madras, N.1    Gibbs, A.L.2    Zhou, Y.3    Zandstra, P.W.4
  • 32
    • 34347345603 scopus 로고    scopus 로고
    • Ph.D. thesis, School of Computer Science, Carnegie-Mellon University, Pittsburg. Technical Report CMU-CS-03-153
    • Margaritis, D. (2003). Learning Bayesian Network Model Structure from Data. Ph.D. thesis, School of Computer Science, Carnegie-Mellon University, Pittsburg. Technical Report CMU-CS-03-153.
    • (2003) Learning Bayesian Network Model Structure from Data
    • Margaritis, D.1
  • 33
    • 0035923683 scopus 로고    scopus 로고
    • Mammalian myotube dedifferentiation induced by newt regeneration extract
    • McGann, C. J., Odelberg, S. J., and Keating, M. T. (2001). Mammalian myotube dedifferentiation induced by newt regeneration extract. Proc. Natl. Acad. Sci. U.S.A. 98, 13699-13704.
    • (2001) Proc. Natl. Acad. Sci. U.S.A , vol.98 , pp. 13699-13704
    • McGann, C.J.1    Odelberg, S.J.2    Keating, M.T.3
  • 34
    • 33646241997 scopus 로고    scopus 로고
    • Purified Wnt5a protein activates or inhibits beta-catenin-TCF signaling depending on receptor context
    • doi: 10.1371/journal.pbio.0040115
    • Mikels, A. J., and Nusse, R. (2006). Purified Wnt5a protein activates or inhibits beta-catenin-TCF signaling depending on receptor context. PLoS Biol. 4, e115. doi: 10.1371/journal.pbio.0040115.
    • (2006) PLoS Biol , vol.4
    • Mikels, A.J.1    Nusse, R.2
  • 35
    • 4143067218 scopus 로고    scopus 로고
    • Modeling genetic networks from clonal analysis
    • Nagarajan, R., Aubin, J. E., and Peterson, C. A. (2004). Modeling genetic networks from clonal analysis. J. Theor. Biol. 230, 359-373.
    • (2004) J. Theor. Biol , vol.230 , pp. 359-373
    • Nagarajan, R.1    Aubin, J.E.2    Peterson, C.A.3
  • 38
    • 0038488949 scopus 로고    scopus 로고
    • Wnt signaling induces the myogenic specification of resident CD45+ adult stem cells during muscle regeneration
    • Polesskaya, A., Seale, P., and Rudnicki, M. A. (2003). Wnt signaling induces the myogenic specification of resident CD45+ adult stem cells during muscle regeneration. Cell 113, 841-852.
    • (2003) Cell , vol.113 , pp. 841-852
    • Polesskaya, A.1    Seale, P.2    Rudnicki, M.A.3
  • 39
    • 70149113077 scopus 로고    scopus 로고
    • R Development Core Team Vienna: R Foundation for Statistical Computing
    • R Development Core Team. (2009). R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing.
    • (2009) R: A Language and Environment for Statistical Computing
  • 40
    • 0034214246 scopus 로고    scopus 로고
    • Transcriptional regulation of adipogenesis
    • Rosen, E. D., and Walkey, C. J. (2000). Transcriptional regulation of adipogenesis. Genes Dev. 14, 1293-1307.
    • (2000) Genes Dev , vol.14 , pp. 1293-1307
    • Rosen, E.D.1    Walkey, C.J.2
  • 42
    • 17644427718 scopus 로고    scopus 로고
    • Causal protein-signaling networks derived from multiparameter single-cell data
    • Sachs, K., Perez, O., Pe'er, D., Lauffenburger, D. A., and Nolan, G. P. (2005). Causal protein-signaling networks derived from multiparameter single-cell data. Science 308, 523-529.
    • (2005) Science , vol.308 , pp. 523-529
    • Sachs, K.1    Perez, O.2    Pe'er, D.3    Lauffenburger, D.A.4    Nolan, G.P.5
  • 43
    • 78650174877 scopus 로고    scopus 로고
    • bnlearn: Bayesian network structure learning. R package version 1.5 (CRAN)
    • Available at
    • Scutari, M. (2009). bnlearn: Bayesian network structure learning. R package version 1.5 (CRAN). Available at http://www.bnlearn.com/
    • (2009)
    • Scutari, M.1
  • 46
    • 0031735819 scopus 로고    scopus 로고
    • Differential activation of Myf5 and MyoD by different Wnts in explants of mouse paraxial mesoderm and the later activation of myogenesis in the absence of Myf5
    • Tajbakhsh, S., Borello, U., Vivarelli, E., Kelly, R., Papkoff, J., Duprez, D., Buckingham, M., and Cossu, G. (1998). Differential activation of Myf5 and MyoD by different Wnts in explants of mouse paraxial mesoderm and the later activation of myogenesis in the absence of Myf5. Development 125, 4155-4162.
    • (1998) Development , vol.125 , pp. 4155-4162
    • Tajbakhsh, S.1    Borello, U.2    Vivarelli, E.3    Kelly, R.4    Papkoff, J.5    Duprez, D.6    Buckingham, M.7    Cossu, G.8
  • 49
    • 0002095306 scopus 로고
    • Equivalence and synthesis of causal models
    • Verma, T. S., and Pearl, J. (1991). Equivalence and synthesis of causal models. Uncertain. Artif. Intell. 6, 255-268.
    • (1991) Uncertain. Artif. Intell , vol.6 , pp. 255-268
    • Verma, T.S.1    Pearl, J.2
  • 51
    • 3042747074 scopus 로고    scopus 로고
    • Reduced expression of FOXC2 and Brown adipogenic genes in human subjects with insulin resistance
    • Yang, X., Enerbäck, S., and Smith, U. (2003). Reduced expression of FOXC2 and Brown adipogenic genes in human subjects with insulin resistance. Obes. Res. 11, 1182-1191.
    • (2003) Obes. Res , vol.11 , pp. 1182-1191
    • Yang, X.1    Enerbäck, S.2    Smith, U.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.