-
1
-
-
3142512612
-
Molecular characterization of the tumor micro-environment in breast cancer
-
Allinen, M., Beroukhim, R., Cai, L., Brennan, C., Lahti-Domenici, J., Huang, H., Porter, D., Hu, M., Chin, L., Richardson, A., Schnitt, S., Sellers, W. R., and Polyak, K. (2004). Molecular characterization of the tumor micro-environment in breast cancer. Cancer Cell 6, 17-32.
-
(2004)
Cancer Cell
, vol.6
, pp. 17-32
-
-
Allinen, M.1
Beroukhim, R.2
Cai, L.3
Brennan, C.4
Lahti-Domenici, J.5
Huang, H.6
Porter, D.7
Hu, M.8
Chin, L.9
Richardson, A.10
Schnitt, S.11
Sellers, W.R.12
Polyak, K.13
-
2
-
-
0043180529
-
Wnt signalling regulates myogenic differentiation in the developing avian wing
-
Anakwe, K., Robson, L., Hadley, J., Buxton, P., Church, V., Allen, S., Hartmann, C., Harfe, B., Nohno, T., Brown, A. M., Evans, D. J., and Francis-West, P. (2003). Wnt signalling regulates myogenic differentiation in the developing avian wing. Development 130, 3503-3514.
-
(2003)
Development
, vol.130
, pp. 3503-3514
-
-
Anakwe, K.1
Robson, L.2
Hadley, J.3
Buxton, P.4
Church, V.5
Allen, S.6
Hartmann, C.7
Harfe, B.8
Nohno, T.9
Brown, A.M.10
Evans, D.J.11
Francis-West, P.12
-
3
-
-
33745532801
-
Increased cell-to-cell variation in gene expression in ageing mouse heart
-
Bahar, R., Hartmann, C. H., Rodriguez, K. A., Denny, A. D., Busuttil, R. A., Dollé, M. E., Calder, R. B., Chisholm, G. B., Pollock, B. H., Klein, C. A., and Vijg, J. (2006). Increased cell-to-cell variation in gene expression in ageing mouse heart. Nature 441, 1011-1014.
-
(2006)
Nature
, vol.441
, pp. 1011-1014
-
-
Bahar, R.1
Hartmann, C.H.2
Rodriguez, K.A.3
Denny, A.D.4
Busuttil, R.A.5
Dollé, M.E.6
Calder, R.B.7
Chisholm, G.B.8
Pollock, B.H.9
Klein, C.A.10
Vijg, J.11
-
4
-
-
13844282111
-
Altered TGFβ signaling pathway in aging myoblasts
-
Beggs, M. L. Nagarajan, R., Taylor-Jones, J. M., Nolen, G., Macnicol, M., and Peterson, C. A. (2004). Altered TGFβ signaling pathway in aging myoblasts. Aging Cell 3, 353-361.
-
(2004)
Aging Cell
, vol.3
, pp. 353-361
-
-
Beggs, M.L.1
Nagarajan, R.2
Taylor-Jones, J.M.3
Nolen, G.4
Macnicol, M.5
Peterson, C.A.6
-
5
-
-
34547924424
-
Increased Wnt signaling during aging alters muscle stem cell fate and increases fibrosis
-
Brack, A. S. Conboy, M. J., Roy, S., Lee, M., Kuo, C. J., Keller, C., and Rando, T. A. (2007). Increased Wnt signaling during aging alters muscle stem cell fate and increases fibrosis. Science 317, 807-810.
-
(2007)
Science
, vol.317
, pp. 807-810
-
-
Brack, A.S.1
Conboy, M.J.2
Roy, S.3
Lee, M.4
Kuo, C.J.5
Keller, C.6
Rando, T.A.7
-
6
-
-
34047109098
-
Beta catenin-independent activation of MyoD in presomitic mesoderm requires PKC and depends on Pax3 transcriptional activity
-
Brunelli, S., Relaix, F., Baesso, S., Buckingham, M., and Cossu, G. (2007). Beta catenin-independent activation of MyoD in presomitic mesoderm requires PKC and depends on Pax3 transcriptional activity. Dev. Biol. 304, 604-614.
-
(2007)
Dev. Biol
, vol.304
, pp. 604-614
-
-
Brunelli, S.1
Relaix, F.2
Baesso, S.3
Buckingham, M.4
Cossu, G.5
-
7
-
-
0038740696
-
Fusion with the fused: a new role for interleukin-4 in the building of muscle
-
Chargé, S., and Rudnicki, M. A. (2003). Fusion with the fused: a new role for interleukin-4 in the building of muscle. Cell 113, 422-423.
-
(2003)
Cell
, vol.113
, pp. 422-423
-
-
Chargé, S.1
Rudnicki, M.A.2
-
8
-
-
70449393175
-
NATbox: a network analysis toolbox in R
-
Chavan, S. S., Bauer, M. A., Scutari, M., Nagarajan, R. (2009). NATbox: a network analysis toolbox in R. BMC Bioinformatics. 10(Suppl 11), S14.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.Suppl 11
-
-
Chavan, S.S.1
Bauer, M.A.2
Scutari, M.3
Nagarajan, R.4
-
10
-
-
66249120015
-
Patterns of Wnt/Fzd/LRP gene expression during embryonic hematopoiesis
-
Corrigan, P. M., Dobbin, E., Freeburn, R. W., and Wheadon, H. (2009). Patterns of Wnt/Fzd/LRP gene expression during embryonic hematopoiesis. Stem Cells Dev. 18, 759-772.
-
(2009)
Stem Cells Dev
, vol.18
, pp. 759-772
-
-
Corrigan, P.M.1
Dobbin, E.2
Freeburn, R.W.3
Wheadon, H.4
-
11
-
-
5644278855
-
The forkhead transcription factor FoxC2 inhibits white adipocyte differentiation
-
Davis, K. E. Moldes, M., and Farmer, S. R. (2004). The forkhead transcription factor FoxC2 inhibits white adipocyte differentiation. J. Biol. Chem. 279, 42453-42461.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 42453-42461
-
-
Davis, K.E.1
Moldes, M.2
Farmer, S.R.3
-
12
-
-
23644446750
-
Expression of CD68 and macrophage chemoattractant protein-1 genes in human adipose and muscle tissues: association with cytokine expression, insulin resistance, and reduction by pioglitazone
-
Di Gregorio, G. B., Yao-Borengasser, A., Rasouli, N., Varma, V., Lu, T., Miles, L. M., Ranganathan, G., Peterson, C. A., McGehee, R. E., and Kern, P. A. (2005). Expression of CD68 and macrophage chemoattractant protein-1 genes in human adipose and muscle tissues: association with cytokine expression, insulin resistance, and reduction by pioglitazone. Diabetes 54, 2305-2313.
-
(2005)
Diabetes
, vol.54
, pp. 2305-2313
-
-
Di Gregorio, G.B.1
Yao-Borengasser, A.2
Rasouli, N.3
Varma, V.4
Lu, T.5
Miles, L.M.6
Ranganathan, G.7
Peterson, C.A.8
McGehee, R.E.9
Kern, P.A.10
-
15
-
-
0002219642
-
Data analysis with Bayesian networks: a bootstrap approach
-
UAI
-
Friedman, N. Goldszmidt, M., and Wyner, A. (1999). "Data analysis with Bayesian networks: a bootstrap approach," in Proceedings of the 15th Conference on Uncertainty in Artificial Intelligence. UAI, 196-205.
-
(1999)
Proceedings of the 15th Conference on Uncertainty in Artificial Intelligence
, pp. 196-205
-
-
Friedman, N.1
Goldszmidt, M.2
Wyner, A.3
-
16
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
Friedman, N., Goldszmidt, M., and Wyner, A. (2000). Using Bayesian networks to analyze expression data. J. Comput. Biol. 7, 601-620.
-
(2000)
J. Comput. Biol
, vol.7
, pp. 601-620
-
-
Friedman, N.1
Goldszmidt, M.2
Wyner, A.3
-
17
-
-
0038048325
-
Inferring genetic networks and identifying compound of action via expression profiling
-
Gardner, T. S., di Bernardo, D., Lorenz, D., and Collins, J. J. (2003). Inferring genetic networks and identifying compound of action via expression profiling. Science 301, 102-1005.
-
(2003)
Science
, vol.301
, pp. 102-1005
-
-
Gardner, T.S.1
di Bernardo, D.2
Lorenz, D.3
Collins, J.J.4
-
19
-
-
0036392159
-
p130/ p107 expression distinguishes adipogenic potential in primary myoblasts based on age
-
Guan, Y., Taylor-Jones, J. M., Peterson, C. A., and McGehee, R. E. Jr. (2002). p130/ p107 expression distinguishes adipogenic potential in primary myoblasts based on age. Biochem. Biophys. Res. Commun. 296, 1340-1345.
-
(2002)
Biochem. Biophys. Res. Commun
, vol.296
, pp. 1340-1345
-
-
Guan, Y.1
Taylor-Jones, J.M.2
Peterson, C.A.3
McGehee Jr., R.E.4
-
20
-
-
50849116835
-
Sca-1-expressing non-myogenic cells contribute to fibrosis in aged skeletal muscle
-
Hidestrand, M., Richards-Malcolm, S., Gurley, C. M., Nolen, G., Grimes, B., Waterstrat, A., Zant, G. V., and Peterson, C. A. (2008). Sca-1-expressing non-myogenic cells contribute to fibrosis in aged skeletal muscle. J. Gerontol. A 63, 566-579.
-
(2008)
J. Gerontol. A
, vol.63
, pp. 566-579
-
-
Hidestrand, M.1
Richards-Malcolm, S.2
Gurley, C.M.3
Nolen, G.4
Grimes, B.5
Waterstrat, A.6
Zant, G.V.7
Peterson, C.A.8
-
21
-
-
0028871780
-
Transdifferentiation of myoblasts by the adipogenic transcription factors PPARγ and C/EBPα
-
Hu, E., Tontonoz, P., and Spiegelman, B. M. (1995). Transdifferentiation of myoblasts by the adipogenic transcription factors PPARγ and C/EBPα. Proc. Natl. Acad. Sci. U.S.A. 92, 9856-9860.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A
, vol.92
, pp. 9856-9860
-
-
Hu, E.1
Tontonoz, P.2
Spiegelman, B.M.3
-
22
-
-
0344464762
-
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
-
Husmeier, D. (2003). Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks. Bioinformatics 19, 2271-2282.
-
(2003)
Bioinformatics
, vol.19
, pp. 2271-2282
-
-
Husmeier, D.1
-
23
-
-
19544379881
-
Stochasticity in gene expression: from theories to phenotypes
-
Kaern, M., Elston, T. C., Blake, W. J., and Collins, J. J. (2005). Stochasticity in gene expression: from theories to phenotypes. Nat. Rev. Genet. 6, 451-464.
-
(2005)
Nat. Rev. Genet
, vol.6
, pp. 451-464
-
-
Kaern, M.1
Elston, T.C.2
Blake, W.J.3
Collins, J.J.4
-
24
-
-
84865982796
-
pcalg: Estimating the skeleton and equivalence class of a DAG
-
0.1-8 (CRAN)
-
Kalisch, M., and Maechler, M. (2009). pcalg: Estimating the skeleton and equivalence class of a DAG. R Package Version 0.1-8 (CRAN).
-
(2009)
R Package Version
-
-
Kalisch, M.1
Maechler, M.2
-
25
-
-
20044386339
-
Adipocyte-specific overexpression of FOXC2 prevents dietinduced increases in intramuscular fatty acyl CoA and insulin resistance
-
Kim, J. K., Kim, H. J., Park, S. Y., Cederberg, A., Westergren, R., Nilsson, D., Higashimori, T., Cho, Y. R., Liu, Z. X., Dong, J., Cline, G. W., Enerback, S., and Shulman, G. I. (2005). Adipocyte-specific overexpression of FOXC2 prevents dietinduced increases in intramuscular fatty acyl CoA and insulin resistance. Diabetes 54, 1657-1663.
-
(2005)
Diabetes
, vol.54
, pp. 1657-1663
-
-
Kim, J.K.1
Kim, H.J.2
Park, S.Y.3
Cederberg, A.4
Westergren, R.5
Nilsson, D.6
Higashimori, T.7
Cho, Y.R.8
Liu, Z.X.9
Dong, J.10
Cline, G.W.11
Enerback, S.12
Shulman, G.I.13
-
26
-
-
33646433058
-
Regulation of bone mass by Wnt signaling
-
Krishnan, V., Bryant, H. U., and Macdougald, O. A. (2006). Regulation of bone mass by Wnt signaling. J. Clin. Invest. 116, 1202-1209.
-
(2006)
J. Clin. Invest
, vol.116
, pp. 1202-1209
-
-
Krishnan, V.1
Bryant, H.U.2
Macdougald, O.A.3
-
27
-
-
0001006209
-
Local computations with probabilities on graphical structures and their application to expert systems
-
Lauritzen, S. L., and Spiegelhalter, D. J. (1988). Local computations with probabilities on graphical structures and their application to expert systems. J. R. Stat. Soc. B 5, 157-224.
-
(1988)
J. R. Stat. Soc. B
, vol.5
, pp. 157-224
-
-
Lauritzen, S.L.1
Spiegelhalter, D.J.2
-
28
-
-
0034350102
-
Comparison of permutation methods for the partial correlation and partial Mantel tests
-
Legendre, P. (2000). Comparison of permutation methods for the partial correlation and partial Mantel tests. J. Stat. Comput. Simul. 67, 37-73.
-
(2000)
J. Stat. Comput. Simul
, vol.67
, pp. 37-73
-
-
Legendre, P.1
-
30
-
-
0036098242
-
Tissue stem cells: definition, plasticity, heterogeneity, self-organization and models - a conceptual approach
-
Loeffler, M., and Roeder, I. (2002). Tissue stem cells: definition, plasticity, heterogeneity, self-organization and models - a conceptual approach. Cells Tissues Organs (Print) 1717, 8-26.
-
(2002)
Cells Tissues Organs (Print)
, vol.1717
, pp. 8-26
-
-
Loeffler, M.1
Roeder, I.2
-
31
-
-
0036254463
-
Modeling stem cell development by retrospective analysis of gene expression profiles in single progenitor-derived colonies
-
Madras, N. Gibbs, A. L., Zhou, Y., and Zandstra, P. W. (2002). Modeling stem cell development by retrospective analysis of gene expression profiles in single progenitor-derived colonies. Stem Cells 20, 230-240.
-
(2002)
Stem Cells
, vol.20
, pp. 230-240
-
-
Madras, N.1
Gibbs, A.L.2
Zhou, Y.3
Zandstra, P.W.4
-
32
-
-
34347345603
-
-
Ph.D. thesis, School of Computer Science, Carnegie-Mellon University, Pittsburg. Technical Report CMU-CS-03-153
-
Margaritis, D. (2003). Learning Bayesian Network Model Structure from Data. Ph.D. thesis, School of Computer Science, Carnegie-Mellon University, Pittsburg. Technical Report CMU-CS-03-153.
-
(2003)
Learning Bayesian Network Model Structure from Data
-
-
Margaritis, D.1
-
33
-
-
0035923683
-
Mammalian myotube dedifferentiation induced by newt regeneration extract
-
McGann, C. J., Odelberg, S. J., and Keating, M. T. (2001). Mammalian myotube dedifferentiation induced by newt regeneration extract. Proc. Natl. Acad. Sci. U.S.A. 98, 13699-13704.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A
, vol.98
, pp. 13699-13704
-
-
McGann, C.J.1
Odelberg, S.J.2
Keating, M.T.3
-
34
-
-
33646241997
-
Purified Wnt5a protein activates or inhibits beta-catenin-TCF signaling depending on receptor context
-
doi: 10.1371/journal.pbio.0040115
-
Mikels, A. J., and Nusse, R. (2006). Purified Wnt5a protein activates or inhibits beta-catenin-TCF signaling depending on receptor context. PLoS Biol. 4, e115. doi: 10.1371/journal.pbio.0040115.
-
(2006)
PLoS Biol
, vol.4
-
-
Mikels, A.J.1
Nusse, R.2
-
35
-
-
4143067218
-
Modeling genetic networks from clonal analysis
-
Nagarajan, R., Aubin, J. E., and Peterson, C. A. (2004). Modeling genetic networks from clonal analysis. J. Theor. Biol. 230, 359-373.
-
(2004)
J. Theor. Biol
, vol.230
, pp. 359-373
-
-
Nagarajan, R.1
Aubin, J.E.2
Peterson, C.A.3
-
38
-
-
0038488949
-
Wnt signaling induces the myogenic specification of resident CD45+ adult stem cells during muscle regeneration
-
Polesskaya, A., Seale, P., and Rudnicki, M. A. (2003). Wnt signaling induces the myogenic specification of resident CD45+ adult stem cells during muscle regeneration. Cell 113, 841-852.
-
(2003)
Cell
, vol.113
, pp. 841-852
-
-
Polesskaya, A.1
Seale, P.2
Rudnicki, M.A.3
-
39
-
-
70149113077
-
-
R Development Core Team Vienna: R Foundation for Statistical Computing
-
R Development Core Team. (2009). R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing.
-
(2009)
R: A Language and Environment for Statistical Computing
-
-
-
40
-
-
0034214246
-
Transcriptional regulation of adipogenesis
-
Rosen, E. D., and Walkey, C. J. (2000). Transcriptional regulation of adipogenesis. Genes Dev. 14, 1293-1307.
-
(2000)
Genes Dev
, vol.14
, pp. 1293-1307
-
-
Rosen, E.D.1
Walkey, C.J.2
-
41
-
-
0034637103
-
Inhibition of adipogenesis by Wnt signaling
-
Ross, S. E. Hemati, N., Longo, K. A., Bennett, C. N., Lucas, P. C., Erickson, R. L., and MacDougald, O. A. (2000). Inhibition of adipogenesis by Wnt signaling. Science 289, 950-953.
-
(2000)
Science
, vol.289
, pp. 950-953
-
-
Ross, S.E.1
Hemati, N.2
Longo, K.A.3
Bennett, C.N.4
Lucas, P.C.5
Erickson, R.L.6
MacDougald, O.A.7
-
42
-
-
17644427718
-
Causal protein-signaling networks derived from multiparameter single-cell data
-
Sachs, K., Perez, O., Pe'er, D., Lauffenburger, D. A., and Nolan, G. P. (2005). Causal protein-signaling networks derived from multiparameter single-cell data. Science 308, 523-529.
-
(2005)
Science
, vol.308
, pp. 523-529
-
-
Sachs, K.1
Perez, O.2
Pe'er, D.3
Lauffenburger, D.A.4
Nolan, G.P.5
-
43
-
-
78650174877
-
bnlearn: Bayesian network structure learning. R package version 1.5 (CRAN)
-
Available at
-
Scutari, M. (2009). bnlearn: Bayesian network structure learning. R package version 1.5 (CRAN). Available at http://www.bnlearn.com/
-
(2009)
-
-
Scutari, M.1
-
44
-
-
33646549289
-
Gene expression becomes heterogeneous with age
-
Somel, M., Khaitovich, P., Bahn, S., Pääbo, S., and Lachmann, M. (2006). Gene expression becomes heterogeneous with age. Curr. Biol. 16, R359-R360.
-
(2006)
Curr. Biol
, vol.16
-
-
Somel, M.1
Khaitovich, P.2
Bahn, S.3
Pääbo, S.4
Lachmann, M.5
-
45
-
-
0003614273
-
-
2nd Edn. Cambridge, MA MIT Press
-
Spirtes, P., Glymour, C., and Scheines, R. (2000). Causation, Prediction, and Search, 2nd Edn. Cambridge, MA MIT Press.
-
(2000)
Causation, Prediction, and Search
-
-
Spirtes, P.1
Glymour, C.2
Scheines, R.3
-
46
-
-
0031735819
-
Differential activation of Myf5 and MyoD by different Wnts in explants of mouse paraxial mesoderm and the later activation of myogenesis in the absence of Myf5
-
Tajbakhsh, S., Borello, U., Vivarelli, E., Kelly, R., Papkoff, J., Duprez, D., Buckingham, M., and Cossu, G. (1998). Differential activation of Myf5 and MyoD by different Wnts in explants of mouse paraxial mesoderm and the later activation of myogenesis in the absence of Myf5. Development 125, 4155-4162.
-
(1998)
Development
, vol.125
, pp. 4155-4162
-
-
Tajbakhsh, S.1
Borello, U.2
Vivarelli, E.3
Kelly, R.4
Papkoff, J.5
Duprez, D.6
Buckingham, M.7
Cossu, G.8
-
47
-
-
0037204538
-
Activation of an adipogenic program in adult myoblasts with age
-
Taylor-Jones, J. M., McGehee, R. E., Rando, T. A., Lecka-Czernik, B., Lipschitz, D. A., and Peterson, C. A. (2002). Activation of an adipogenic program in adult myoblasts with age. Mech. Ageing Dev. 123, 649-661.
-
(2002)
Mech. Ageing Dev
, vol.123
, pp. 649-661
-
-
Taylor-Jones, J.M.1
McGehee, R.E.2
Rando, T.A.3
Lecka-Czernik, B.4
Lipschitz, D.A.5
Peterson, C.A.6
-
48
-
-
1642397083
-
Algorithms for large scale Markov blanket discovery
-
AAAI Press
-
Tsamardinos, I., Aliferis, C., Statnikov, A., and Statnikov, Er., (2003). "Algorithms for large scale Markov blanket discovery," in Proceedings of the Sixteenth International Florida Artificial Intelligence Research Society Conference. AAAI Press, 376-381.
-
(2003)
Proceedings of the Sixteenth International Florida Artificial Intelligence Research Society Conference
, pp. 376-381
-
-
Tsamardinos, I.1
Aliferis, C.2
Statnikov, A.3
Statnikov, E.r.4
-
49
-
-
0002095306
-
Equivalence and synthesis of causal models
-
Verma, T. S., and Pearl, J. (1991). Equivalence and synthesis of causal models. Uncertain. Artif. Intell. 6, 255-268.
-
(1991)
Uncertain. Artif. Intell
, vol.6
, pp. 255-268
-
-
Verma, T.S.1
Pearl, J.2
-
50
-
-
16344373011
-
Wnt10b deficiency promotes coexpression of myogenic and adipogenic programs in myoblasts
-
Vertino, A. M., Taylor-Jones, J. M., Longo, K. A., Bearden, E. D., Lane, T. F., McGehee, R. E. Jr, MacDougald, O. A., and Peterson, C. A. (2005). Wnt10b deficiency promotes coexpression of myogenic and adipogenic programs in myoblasts. Mol. Biol. Cell 16, 2039-2048.
-
(2005)
Mol. Biol. Cell
, vol.16
, pp. 2039-2048
-
-
Vertino, A.M.1
Taylor-Jones, J.M.2
Longo, K.A.3
Bearden, E.D.4
Lane, T.F.5
McGehee Jr, R.E.6
MacDougald, O.A.7
Peterson, C.A.8
-
51
-
-
3042747074
-
Reduced expression of FOXC2 and Brown adipogenic genes in human subjects with insulin resistance
-
Yang, X., Enerbäck, S., and Smith, U. (2003). Reduced expression of FOXC2 and Brown adipogenic genes in human subjects with insulin resistance. Obes. Res. 11, 1182-1191.
-
(2003)
Obes. Res
, vol.11
, pp. 1182-1191
-
-
Yang, X.1
Enerbäck, S.2
Smith, U.3
|