메뉴 건너뛰기




Volumn 29, Issue 4, 2010, Pages 546-564

The binding modes and binding affinities of epipodophyllotoxin derivatives with human topoisomerase IIα

Author keywords

Docking; eMBrAcE; Epipodophyllotoxin; Human topoisomerase II

Indexed keywords

3D STRUCTURE; BIMOLECULAR ASSOCIATION; BINDING AFFINITIES; BINDING MODES; DERIVATIZATIONS; DNA COMPLEX; DOCKING SCORE; DOUBLE STRANDED DNA; EMBRACE; EPIPODOPHYLLOTOXIN; FREE ENERGY OF BINDING; GOOD DATA; HOMOLOGY MODELING; HUMAN CANCER; HUMAN TOPOISOMERASE; LOW LEVEL; MOLECULAR DESCRIPTORS; PREDICTION MODEL; PREDICTIVE CAPABILITIES; ROOT MEAN SQUARE ERRORS; SPECIFIC INHIBITORS; STRUCTURE ACTIVITY RELATIONSHIPS; THERAPEUTIC VALUES; TOPOISOMERASE II; VIRTUAL LIBRARIES;

EID: 78650517282     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmgm.2010.10.005     Document Type: Article
Times cited : (13)

References (42)
  • 1
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: Structure, function, and mechanism
    • J.J. Champoux DNA topoisomerases: structure, function, and mechanism Annu. Rev. Biochem. 70 2001 369 413
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 2
    • 0036085460 scopus 로고    scopus 로고
    • Cellular roles of DNA topoisomerases: A molecular perspective
    • J.C. Wang Cellular roles of DNA topoisomerases: a molecular perspective Nat. Rev. Mol. Cell. Biol. 3 2002 430 440
    • (2002) Nat. Rev. Mol. Cell. Biol. , vol.3 , pp. 430-440
    • Wang, J.C.1
  • 3
    • 0030014783 scopus 로고    scopus 로고
    • DNA topoisomerases
    • J.C. Wang DNA topoisomerases Annu. Rev. Biochem. 65 1996 635 692
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 635-692
    • Wang, J.C.1
  • 4
    • 0032190561 scopus 로고    scopus 로고
    • Mechanism of action of eukaryotic topoisomerase II and drugs targeted to the enzyme
    • D.A. Burden, and N. Osheroff Mechanism of action of eukaryotic topoisomerase II and drugs targeted to the enzyme Biochim. Biophys. Acta 1400 1998 139 154
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 139-154
    • Burden, D.A.1    Osheroff, N.2
  • 5
    • 0022400533 scopus 로고
    • DNA topoisomerase II is required at the time of mitosis in yeast
    • T. Goto, C. Holm, J.C. Wang, and D. Botstein DNA topoisomerase II is required at the time of mitosis in yeast Cell 41 1985 553 563
    • (1985) Cell , vol.41 , pp. 553-563
    • Goto, T.1    Holm, C.2    Wang, J.C.3    Botstein, D.4
  • 6
    • 0027381810 scopus 로고
    • When good enzymes go bad: Conversion of topoisomerase II to a cellular toxin by antineoplastic drugs
    • A.H. Corbett, and N. Osheroff When good enzymes go bad: conversion of topoisomerase II to a cellular toxin by antineoplastic drugs Chem. Res. Toxicol. 6 1993 585 597
    • (1993) Chem. Res. Toxicol. , vol.6 , pp. 585-597
    • Corbett, A.H.1    Osheroff, N.2
  • 7
    • 0029144134 scopus 로고
    • Topoisomerase poisons: Harnessing the dark side of enzyme mechanism
    • S.J. Froelich-Ammon, and N. Osheroff Topoisomerase poisons: harnessing the dark side of enzyme mechanism J. Biol. Chem. 270 1995 21429 21432
    • (1995) J. Biol. Chem. , vol.270 , pp. 21429-21432
    • Froelich-Ammon, S.J.1    Osheroff, N.2
  • 8
    • 0032189945 scopus 로고    scopus 로고
    • DNA sequence selectivity of topoisomerases and topoisomerase poisons
    • G. Capranico, and M. Binaschi DNA sequence selectivity of topoisomerases and topoisomerase poisons Biochim. Biophys. Acta 1400 1998 185 194
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 185-194
    • Capranico, G.1    Binaschi, M.2
  • 9
    • 3142662140 scopus 로고    scopus 로고
    • Development of DNA topoisomerase-related therapeutics: A short perspective of new challenges
    • G. Capranico, G. Zagotto, and M. Palumbo Development of DNA topoisomerase-related therapeutics: a short perspective of new challenges Curr. Med. Chem. Anti-Cancer Agents 4 2004 335 345
    • (2004) Curr. Med. Chem. Anti-Cancer Agents , vol.4 , pp. 335-345
    • Capranico, G.1    Zagotto, G.2    Palumbo, M.3
  • 10
    • 0032168167 scopus 로고    scopus 로고
    • Etoposide: Four decades of development of a topoisomerase II inhibitor
    • K.R. Hande Etoposide: four decades of development of a topoisomerase II inhibitor Eur. J. Cancer 34 1998 1514 1521
    • (1998) Eur. J. Cancer , vol.34 , pp. 1514-1521
    • Hande, K.R.1
  • 13
    • 0032189262 scopus 로고    scopus 로고
    • Cell death induced by topoisomerase-targeted drugs: More questions than answers
    • S.H. Kaufmann Cell death induced by topoisomerase-targeted drugs: more questions than answers Biochim. Biophys. Acta 1400 1998 195 211
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 195-211
    • Kaufmann, S.H.1
  • 15
    • 0028144889 scopus 로고
    • Etoposide: Current status and future perspectives in the management of malignant neoplasms
    • J. Aisner, C.P. Belani, and L.A. Doyle Etoposide: current status and future perspectives in the management of malignant neoplasms Cancer Chemother. Pharmacol. 34 1994 S118
    • (1994) Cancer Chemother. Pharmacol. , vol.34 , pp. 118
    • Aisner, J.1    Belani, C.P.2    Doyle, L.A.3
  • 16
    • 0024412180 scopus 로고
    • Antitumor Agents 170. New cytotoxic 4-alkylamino analogues of 4′-demethylepipodophyllotoxin as inhibitors of human DNA toposiomerase II
    • K.H. Lee, Y. Imakura, M. Haruna, S.A. Beers, L.S. Thurston, H.J. Dai, and C.H. Chen Antitumor Agents 170. New cytotoxic 4-alkylamino analogues of 4′-demethylepipodophyllotoxin as inhibitors of human DNA toposiomerase II J. Nat. Prod. 52 1989 606 613
    • (1989) J. Nat. Prod. , vol.52 , pp. 606-613
    • Lee, K.H.1    Imakura, Y.2    Haruna, M.3    Beers, S.A.4    Thurston, L.S.5    Dai, H.J.6    Chen, C.H.7
  • 17
    • 0024988752 scopus 로고
    • Antitumor agents 113. New 4-arylamino derivatives of 4′-O-demethyl- epipodophyllotoxin and related compounds as potent inhibitors of human DNA toposiomerase II
    • Z.Q. Wang, Y.H. Kuo, D. Schnur, J.P. Bowen, S.Y. Liu, F.S. Han, Y.C. Cheng, and K.H. Lee Antitumor agents 113. New 4-arylamino derivatives of 4′-O-demethyl-epipodophyllotoxin and related compounds as potent inhibitors of human DNA toposiomerase II J. Med. Chem. 33 1990 2660 2666
    • (1990) J. Med. Chem. , vol.33 , pp. 2660-2666
    • Wang, Z.Q.1    Kuo, Y.H.2    Schnur, D.3    Bowen, J.P.4    Liu, S.Y.5    Han, F.S.6    Cheng, Y.C.7    Lee, K.H.8
  • 18
    • 0025350760 scopus 로고
    • Antitumor agents. 111. New 4-hydroxylated and 4-halogenated anilino derivatives of 4′-demethylepipodophyllotoxin as potent inhibitors of Human DNA toposiomerase II
    • K.H. Lee, S.A. Beers, M. Mori, Z.Q. Wang, Y.H. Kuo, l. Li, S.Y. Liu, J.Y. Cheng, F.S. Han, and Y.C. Cheng Antitumor agents. 111. New 4-hydroxylated and 4-halogenated anilino derivatives of 4′-demethylepipodophyllotoxin as potent inhibitors of Human DNA toposiomerase II J. Med. Chem. 33 1990 1364 1368
    • (1990) J. Med. Chem. , vol.33 , pp. 1364-1368
    • Lee, K.H.1    Beers, S.A.2    Mori, M.3    Wang, Z.Q.4    Kuo, Y.H.5    Li, L.6    Liu, S.Y.7    Cheng, J.Y.8    Han, F.S.9    Cheng, Y.C.10
  • 19
    • 0026343096 scopus 로고
    • Antitumor agents. 120. New 4-substituted benzylamine and benzyl ether derivatives of 4′-O- demethyl-epipodophyllotoxin as potent inhibitors of human DNA toposiomerase II
    • X.M. Zhou, Z.Q. Wang, J.Y. Cheng, H.X. Chen, Y.C. Cheng, and K.H. Lee Antitumor agents. 120. New 4-substituted benzylamine and benzyl ether derivatives of 4′-O- demethyl-epipodophyllotoxin as potent inhibitors of human DNA toposiomerase II J. Med. Chem. 33 1991 3346 3350
    • (1991) J. Med. Chem. , vol.33 , pp. 3346-3350
    • Zhou, X.M.1    Wang, Z.Q.2    Cheng, J.Y.3    Chen, H.X.4    Cheng, Y.C.5    Lee, K.H.6
  • 20
    • 0026549112 scopus 로고
    • Antitumor agents. 123. Synthesis and human DNA topoisomerase II inhibitory activity of 2′-chloro derivatives of etoposide and 4β-(arylamino)-4′-O-demethylpodophyllotoxins
    • H. Hu, Z.Q. Wang, S.Y. Liu, Y.C. Cheng, and K.H. Lee Antitumor agents. 123. Synthesis and human DNA topoisomerase II inhibitory activity of 2′-chloro derivatives of etoposide and 4β-(arylamino)-4′-O- demethylpodophyllotoxins J. Med. Chem. 35 1992 866 871
    • (1992) J. Med. Chem. , vol.35 , pp. 866-871
    • Hu, H.1    Wang, Z.Q.2    Liu, S.Y.3    Cheng, Y.C.4    Lee, K.H.5
  • 21
    • 0026545101 scopus 로고
    • Antitumor Agents. 124. New 4β-substituted aniline derivatives of 6,7-O, O-demethylpodophyllotoxin as potent inhibitors of Human DNA toposiomerase II
    • Z.Q. Wang, H. Hu, H.X. Chen, Y.C. Cheng, and K.H. Lee Antitumor Agents. 124. New 4β-substituted aniline derivatives of 6,7-O, O- demethylpodophyllotoxin as potent inhibitors of Human DNA toposiomerase II J. Med. Chem. 35 1992 871 877
    • (1992) J. Med. Chem. , vol.35 , pp. 871-877
    • Wang, Z.Q.1    Hu, H.2    Chen, H.X.3    Cheng, Y.C.4    Lee, K.H.5
  • 22
    • 0027452746 scopus 로고
    • Antitumor Agents. 125. New 4-benzoylamino derivatives of 4′-O-demethyl-4-desoxypodophyllotoxin and 4-benzoyl derivatives of 4′-O-demethylpodophyllotoxin as potent inhibitors of human DNA toposiomerase II
    • X.M. Zhou, Z.Q. Wang, H.X. Chen, Y.C. Cheng, and K.H. Lee Antitumor Agents. 125. New 4-benzoylamino derivatives of 4′-O-demethyl-4- desoxypodophyllotoxin and 4-benzoyl derivatives of 4′-O- demethylpodophyllotoxin as potent inhibitors of human DNA toposiomerase II Pharm. Res. 10 1993 214 219
    • (1993) Pharm. Res. , vol.10 , pp. 214-219
    • Zhou, X.M.1    Wang, Z.Q.2    Chen, H.X.3    Cheng, Y.C.4    Lee, K.H.5
  • 23
    • 0027417854 scopus 로고
    • Antitumor Agents. 126. Novel 4β-substituted anilino derivatives of 3,4′-O, O-didemethylpodophyllotoxin as potent inhibitors of human DNA toposiomerase II
    • Z.Q. Wang, Y.C. Cheng, H.X. Chen, J.Y. Cheng, X. Guo, Y.C. Cheng, and K.H. Lee Antitumor Agents. 126. Novel 4β-substituted anilino derivatives of 3,4′-O, O-didemethylpodophyllotoxin as potent inhibitors of human DNA toposiomerase II Pharm. Res. 10 1993 343 350
    • (1993) Pharm. Res. , vol.10 , pp. 343-350
    • Wang, Z.Q.1    Cheng, Y.C.2    Chen, H.X.3    Cheng, J.Y.4    Guo, X.5    Cheng, Y.C.6    Lee, K.H.7
  • 24
    • 0000011671 scopus 로고
    • Nitrosourea derivatives of 3′,4′-dioxo-4-deoxypodophyllotoxin and urea derivatives of 4′-O-demethylpodophyllotoxin as potent inhibitors of Human DNA toposiomerase II
    • M. Miyahara, Y. Kashiwada, X. Guo, H.X. Chen, Y.C. Cheng, and K.H. Lee Nitrosourea derivatives of 3′,4′-dioxo-4-deoxypodophyllotoxin and urea derivatives of 4′-O-demethylpodophyllotoxin as potent inhibitors of Human DNA toposiomerase II Heterocycles 39 1994 361 369
    • (1994) Heterocycles , vol.39 , pp. 361-369
    • Miyahara, M.1    Kashiwada, Y.2    Guo, X.3    Chen, H.X.4    Cheng, Y.C.5    Lee, K.H.6
  • 25
    • 0028167580 scopus 로고
    • Antitumor Agents. 148.Synthesis and biological evaluation of novel 4-amino derivatives of etoposide with better pharmacological profiles
    • Y.L. Zhang, X. Guo, Y.C. Cheng, and K.H. Lee Antitumor Agents. 148.Synthesis and biological evaluation of novel 4-amino derivatives of etoposide with better pharmacological profiles J. Med. Chem. 37 1994 446 452
    • (1994) J. Med. Chem. , vol.37 , pp. 446-452
    • Zhang, Y.L.1    Guo, X.2    Cheng, Y.C.3    Lee, K.H.4
  • 26
    • 0031552141 scopus 로고    scopus 로고
    • Antitumor agents. 177. Design, synthesis and biological evaluation of novel etoposide analogues bearing pyrrolecarboxamidino group as DNA topoisomerase II inhibitors
    • Z. Ji, H.K. Wang, K.F. Bastow, X.K. Zhu, S.J. Cho, Y.C. Cheng, and K.H. Lee Antitumor agents. 177. Design, synthesis and biological evaluation of novel etoposide analogues bearing pyrrolecarboxamidino group as DNA topoisomerase II inhibitors Bioorg. Med. Chem. Lett. 7 1997 607 612
    • (1997) Bioorg. Med. Chem. Lett. , vol.7 , pp. 607-612
    • Ji, Z.1    Wang, H.K.2    Bastow, K.F.3    Zhu, X.K.4    Cho, S.J.5    Cheng, Y.C.6    Lee, K.H.7
  • 27
    • 0033168569 scopus 로고    scopus 로고
    • Antitumor agents. 194. Synthesis and biological evaluation of 4-β-Mono-,-Di-,and -trisubstituted aniline-4′-demethyl- podophyllotoxin and related compounds with improved pharmacological profiles
    • X.K. Zhu, J. Guan, Y. Tachibana, K.F. Bastow, S.J. Cho, H.H. Cheng, Y.C. Cheng, M. Gurwith, and K.H. Lee Antitumor agents. 194. Synthesis and biological evaluation of 4-β-Mono-,-Di-,and -trisubstituted aniline-4′-demethyl- podophyllotoxin and related compounds with improved pharmacological profiles J. Med. Chem. 42 1999 2441 2446
    • (1999) J. Med. Chem. , vol.42 , pp. 2441-2446
    • Zhu, X.K.1    Guan, J.2    Tachibana, Y.3    Bastow, K.F.4    Cho, S.J.5    Cheng, H.H.6    Cheng, Y.C.7    Gurwith, M.8    Lee, K.H.9
  • 28
    • 0035852792 scopus 로고    scopus 로고
    • Analysis of etoposide binding to subdomains of human DNA topoisomerase II in the absence of DNA
    • D. Leroy, A.V. Kajava, C. Frei, and S.M. Gasser Analysis of etoposide binding to subdomains of human DNA topoisomerase II in the absence of DNA Biochemistry 40 2001 1624 1634
    • (2001) Biochemistry , vol.40 , pp. 1624-1634
    • Leroy, D.1    Kajava, A.V.2    Frei, C.3    Gasser, S.M.4
  • 29
    • 0032947158 scopus 로고    scopus 로고
    • Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands
    • D. Fass, C.E. Bogden, and J.M. Berger Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands Nat. Struct. Biol. 6 1999 322 326
    • (1999) Nat. Struct. Biol. , vol.6 , pp. 322-326
    • Fass, D.1    Bogden, C.E.2    Berger, J.M.3
  • 33
    • 0030767485 scopus 로고    scopus 로고
    • VERIFY3D: Assessment of protein models with three-dimensional profiles
    • D. Eisenberg, R. Luthy, and J.U. Bowie VERIFY3D: assessment of protein models with three-dimensional profiles Methods Enzymol. 277 1997 396 404
    • (1997) Methods Enzymol. , vol.277 , pp. 396-404
    • Eisenberg, D.1    Luthy, R.2    Bowie, J.U.3
  • 34
    • 0027172883 scopus 로고
    • Effects of topoisomerase II targeted drugs on enzyme-mediated DNA cleavage and ATP hydrolysis: Evidence for distinct drug interaction domains on topoisomerase II
    • M.J. Robinson, A.H. Corbett, and N. Osheroff Effects of topoisomerase II targeted drugs on enzyme-mediated DNA cleavage and ATP hydrolysis: evidence for distinct drug interaction domains on topoisomerase II Biochemistry 32 1993 3638 3643
    • (1993) Biochemistry , vol.32 , pp. 3638-3643
    • Robinson, M.J.1    Corbett, A.H.2    Osheroff, N.3
  • 35
    • 3142662140 scopus 로고    scopus 로고
    • Development of DNA topoisomeraserelated therapeutics: A short perspective of new challenges
    • G. Capranico, G. Zagotto, and M. Palumbo Development of DNA topoisomeraserelated therapeutics: a short perspective of new challenges Curr. Top. Med. Chem. 4 2004 335 345
    • (2004) Curr. Top. Med. Chem. , vol.4 , pp. 335-345
    • Capranico, G.1    Zagotto, G.2    Palumbo, M.3
  • 36
    • 78650516217 scopus 로고    scopus 로고
    • Schrodinger,Inc.,Portland,OR (accessed:24.04.2007)
    • Schrodinger LLC., http://www.schrodinger.com, Schrodinger, Inc., Portland, OR, 2000 (accessed: 24. 04.2007).
    • (2000)
  • 38
    • 0031226772 scopus 로고    scopus 로고
    • Empirical scoring functions: The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
    • M.D. Eldridge, C.W. Murray, T.R. Auton, G.V. Paolini, and R.P. Mee Empirical scoring functions: the development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes J. Comput-Aided Mol. Des. 11 1997 425 445
    • (1997) J. Comput-Aided Mol. Des. , vol.11 , pp. 425-445
    • Eldridge, M.D.1    Murray, C.W.2    Auton, T.R.3    Paolini, G.V.4    Mee, R.P.5
  • 39
    • 0037196341 scopus 로고    scopus 로고
    • Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy
    • O. Guvench, J. Weiser, P.S. Shenkin, I. Kolossváry, and W.C. Still Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy J. Comput. Chem. 23 2002 214 221
    • (2002) J. Comput. Chem. , vol.23 , pp. 214-221
    • Guvench, O.1    Weiser, J.2    Shenkin, P.S.3    Kolossváry, I.4    Still, W.C.5
  • 40
    • 0037285752 scopus 로고    scopus 로고
    • A core-weighted fitting method for docking atomic structures into low-resolution maps: Application to cryo-electron microscopy
    • X. Wu, J.L.S. Milne, M.J. Borgnia, A.V. Rostapshov, S. Subramaniam, and B.R. Brooks A core-weighted fitting method for docking atomic structures into low-resolution maps: application to cryo-electron microscopy J. Struct. Biol. 141 2003 63 76
    • (2003) J. Struct. Biol. , vol.141 , pp. 63-76
    • Wu, X.1    Milne, J.L.S.2    Borgnia, M.J.3    Rostapshov, A.V.4    Subramaniam, S.5    Brooks, B.R.6
  • 41
    • 0037450531 scopus 로고    scopus 로고
    • A new quantum stochastic tunneling optimisation method for protein-ligand docking
    • N.P. Todorov, R.L. Mancera, and P.H. Monthoux A new quantum stochastic tunneling optimisation method for protein-ligand docking Chem. Phys. Lett. 369 2003 257 263
    • (2003) Chem. Phys. Lett. , vol.369 , pp. 257-263
    • Todorov, N.P.1    Mancera, R.L.2    Monthoux, P.H.3
  • 42
    • 33751155400 scopus 로고
    • Estimating liphophilicity using GB/SA continuum solvation model: A direct method for computing partition coefficients
    • C.H. Reynolds Estimating liphophilicity using GB/SA continuum solvation model: a direct method for computing partition coefficients J. Chem. Inf. Comput. Sci. 35 1995 738 742
    • (1995) J. Chem. Inf. Comput. Sci. , vol.35 , pp. 738-742
    • Reynolds, C.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.