메뉴 건너뛰기




Volumn 4, Issue 12, 2010, Pages 1958-1970

A catalogue of validated single nucleotide polymorphisms in bovine orthologs of mammalian imprinted genes and associations with beef production traits

Author keywords

beef; cattle; imprinting; ortholog; SNP

Indexed keywords

BOS; BOS TAURUS; BOVINAE; MAMMALIA; MURINAE; OVIS ARIES; SUIDAE;

EID: 78650509698     PISSN: 17517311     EISSN: 1751732X     Source Type: Journal    
DOI: 10.1017/S1751731110001163     Document Type: Article
Times cited : (16)

References (65)
  • 1
    • 67349112823 scopus 로고    scopus 로고
    • Genome-wide association analysis in domestic animals: A powerful approach for genetic dissection of trait loci
    • Andersson L 2009. Genome-wide association analysis in domestic animals: a powerful approach for genetic dissection of trait loci. Genetica 136, 341-349.
    • (2009) Genetica , vol.136 , pp. 341-349
    • Andersson, L.1
  • 2
    • 0035514131 scopus 로고    scopus 로고
    • Genetic and phenotypic variance and covariance components for feed intake, feed efficiency, and other postweaning traits in Angus cattle
    • Arthur PF, Archer JA, Johnston DJ, Herd RM, Richardson EC and Parnell PF 2001. Genetic and phenotypic variance and covariance components for feed intake, feed efficiency, and other postweaning traits in Angus cattle. Journal of Animal Science 79, 2805-2811.
    • (2001) Journal of Animal Science , vol.79 , pp. 2805-2811
    • Arthur, P.F.1    Archer, J.A.2    Johnston, D.J.3    Herd, R.M.4    Richardson, E.C.5    Parnell, P.F.6
  • 3
    • 34547135987 scopus 로고    scopus 로고
    • A validated whole-genome association study of efficient food conversion in cattle
    • DOI 10.1534/genetics.107.072637
    • Barendse W, Reverter A, Bunch RJ, Harrison BE, Barris W and Thomas MB 2007. A validated whole-genome association study of efficient food conversion in cattle. Genetics 176, 1893-1905. (Pubitemid 47105241)
    • (2007) Genetics , vol.176 , Issue.3 , pp. 1893-1905
    • Barendse, W.1    Reverter, A.2    Bunch, R.J.3    Harrison, B.E.4    Barris, W.5    Thomas, M.B.6
  • 4
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • DOI 10.1093/bioinformatics/bth457
    • Barrett JC, Fry B, Maller J and Daly MJ 2005. Haploview: analysis and visualization of LD and haplotype map. Bioinformatics 21, 263-265. (Pubitemid 40202029)
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 5
    • 70749116136 scopus 로고    scopus 로고
    • Improving feed efficiency in cattle with residual feed intake
    • (ed. P Garnsworthy) University of Nottingham Press, Nottingham
    • Berry DP 2008. Improving feed efficiency in cattle with residual feed intake. In Recent advances in animal nutrition (ed. P Garnsworthy) University of Nottingham Press, Nottingham.
    • (2008) Recent Advances in Animal Nutrition
    • Berry, D.P.1
  • 6
    • 34748824368 scopus 로고    scopus 로고
    • Genetics and the origins of domestic cattle
    • (ed. MA Zeder, DG Bradley, E Emshwiller and BD Smith) University of California Press, Berkeley, CA, USA
    • Bradley DG and Magee DA 2006. Genetics and the origins of domestic cattle. In Documenting domestication: new genetic and archaeological paradigms (ed. MA Zeder, DG Bradley, E Emshwiller and BD Smith), pp. 317-328, University of California Press, Berkeley, CA, USA.
    • (2006) Documenting Domestication: New Genetic and Archaeological Paradigms , pp. 317-328
    • Bradley, D.G.1    Magee, D.A.2
  • 7
    • 0242354083 scopus 로고    scopus 로고
    • DNA markers reveal the complexity of livestock domestication
    • DOI 10.1038/nrg1203
    • Bruford MW, Bradley DG and Luikart G 2003. DNA markers reveal the complexity of livestock domestication. Nature Reviews Genetics 4, 900-910. (Pubitemid 37345616)
    • (2003) Nature Reviews Genetics , vol.4 , Issue.11 , pp. 900-910
    • Bruford, M.W.1    Bradley, D.G.2    Luikart, G.3
  • 10
    • 47249117982 scopus 로고    scopus 로고
    • Isolation and imprinting analysis of the porcine DLX5 gene and its association with carcass traits
    • DOI 10.1111/j.1365-2052.2008.01740.x
    • Cheng HC, Zhang FW, Jiang CD, Li FE, Xiong YZ and Deng CY 2008. Isolation and imprinting analysis of the porcine DLX5 gene and its association with carcass traits. Animal Genetics 39, 395-399. (Pubitemid 351989273)
    • (2008) Animal Genetics , vol.39 , Issue.4 , pp. 395-399
    • Cheng, H.C.1    Zhang, F.W.2    Jiang, C.D.3    Li, F.E.4    Xiong, Y.Z.5    Deng, C.Y.6
  • 11
    • 0041314075 scopus 로고    scopus 로고
    • Two ENU-induced mutations in Rasgrf1 and early mouse growth retardation
    • DOI 10.1007/s00335-002-2258-4
    • Clapcott SJ, Peters J, Orban PC, Brambilla R and Graham CF 2003. Two ENU-induced mutations in Rasgrf1and early mouse growth retardation. Mammalian Genome 14, 495-505. (Pubitemid 36898168)
    • (2003) Mammalian Genome , vol.14 , Issue.8 , pp. 495-505
    • Clapcott, S.J.1    Peters, J.2    Orban, P.C.3    Brambilla, R.4    Graham, C.F.5
  • 14
    • 77649094505 scopus 로고    scopus 로고
    • Phenotypic and genetic parameters for different measures of feed efficiency in different breeds of Irish performance-tested beef bulls
    • Crowley JJ, McGee M, Kenny DA, Crews Jr DH, Evans RD and Berry DP 2010. Phenotypic and genetic parameters for different measures of feed efficiency in different breeds of Irish performance-tested beef bulls. Journal of Animal Science 88, 885-894.
    • (2010) Journal of Animal Science , vol.88 , pp. 885-894
    • Crowley, J.J.1    McGee, M.2    Kenny, D.A.3    Crews Jr., D.H.4    Evans, R.D.5    Berry, D.P.6
  • 16
    • 0035989448 scopus 로고    scopus 로고
    • On the detection of imprinted quantitative trait loci in experimental crosses of outbred species
    • de Koning DJ, Bovenhuis H and van Arendonk JA 2002. On the detection of imprinted quantitative trait loci in experimental crosses of outbred species. Genetics 161, 931-938. (Pubitemid 34705430)
    • (2002) Genetics , vol.161 , Issue.2 , pp. 931-938
    • De Koning, D.-J.1    Bovenhuis, H.2    Van Arendonk, J.A.M.3
  • 18
    • 72849114125 scopus 로고    scopus 로고
    • Imprint switch mutations at Rasgrf1 support conflict hypothesis of imprinting and define a growth control mechanism upstream of IGF1
    • Drake NM, Park YJ, Shirali AS, Cleland TA and Soloway PD 2009. Imprint switch mutations at Rasgrf1 support conflict hypothesis of imprinting and define a growth control mechanism upstream of IGF1. Mammalian Genome 20, 654-663.
    • (2009) Mammalian Genome , vol.20 , pp. 654-663
    • Drake, N.M.1    Park, Y.J.2    Shirali, A.S.3    Cleland, T.A.4    Soloway, P.D.5
  • 19
    • 77949820071 scopus 로고    scopus 로고
    • Genomic scan for quantitative trait loci of chemical and physical body composition and deposition on pig chromosome X including the pseudoautosomal region of males
    • Duthie CA, Simm G, Perez-Enciso M, Doeschl-Wilson A, Kalm E, Knap PW and Roehe R 2009. Genomic scan for quantitative trait loci of chemical and physical body composition and deposition on pig chromosome X including the pseudoautosomal region of males. Genetics Selection Evolution 41, 27.
    • (2009) Genetics Selection Evolution , vol.41 , pp. 27
    • Duthie, C.A.1    Simm, G.2    Perez-Enciso, M.3    Doeschl-Wilson, A.4    Kalm, E.5    Knap, P.W.6    Roehe, R.7
  • 20
  • 21
    • 0029245313 scopus 로고
    • Genetic parameter estimation of postweaning gain, feed intake and feed efficiency for Hereford and Angus bulls fed two different diets
    • Fan LQ, Bailey DRC and Shannon NH 1995. Genetic parameter estimation of postweaning gain, feed intake and feed efficiency for Hereford and Angus bulls fed two different diets. Journal of Animal Science 73, 365-372.
    • (1995) Journal of Animal Science , vol.73 , pp. 365-372
    • Fan, L.Q.1    Drc, B.2    Shannon, N.H.3
  • 22
    • 70349329406 scopus 로고    scopus 로고
    • Epigenetic asymmetry in the zygote and mammalian development
    • Feil R 2009. Epigenetic asymmetry in the zygote and mammalian development. International Journal of Developmental Biology 53, 191-201.
    • (2009) International Journal of Developmental Biology , vol.53 , pp. 191-201
    • Feil, R.1
  • 24
    • 0036799595 scopus 로고    scopus 로고
    • Identification of the single base change causing the callipyge muscle hypertrophy phenotype, the only known example of polar overdominance in mammals
    • Freking BA, Murphy SK, Wylie AA, Rhodes SJ, Keele JW, Leymaster KA, Jirtle RL and Smith TP 2002. Identification of the single base change causing the callipyge muscle hypertrophy phenotype, the only known example of polar overdominance in mammals. Genome Research 12, 1496-1506.
    • (2002) Genome Research , vol.12 , pp. 1496-1506
    • Freking, B.A.1    Murphy, S.K.2    Wylie, A.A.3    Rhodes, S.J.4    Keele, J.W.5    Leymaster, K.A.6    Jirtle, R.L.7    Smith, T.P.8
  • 25
    • 0037406999 scopus 로고    scopus 로고
    • The callipyge locus: Evidence for the trans interaction of reciprocally imprinted genes
    • DOI 10.1016/S0168-9525(03)00082-9
    • Georges M, Charlier C and Cockett N 2003. The callipyge locus: evidence for the trans interaction of reciprocally imprinted genes. Trends in Genetics 19, 248-252. (Pubitemid 36507005)
    • (2003) Trends in Genetics , vol.19 , Issue.5 , pp. 248-252
    • Georges, M.1    Charlier, C.2    Cockett, N.3
  • 27
    • 0034788432 scopus 로고    scopus 로고
    • Hippocampus-dependent learning and memory is impaired in mice lacking the Ras-guanine-nucleotide releasing factor 1 (Ras-GRF1)
    • DOI 10.1016/S0028-3908(01)00096-X, PII S002839080100096X
    • Giese KP, Friedman E, Telliez JB, Fedorov NB, Wines M, Feig LA and Silva AJ 2001. Hippocampus-dependent learning and memory is impaired in mice lacking the Ras-guanine-nucleotide releasing factor 1 (Ras-GRF1). Neurophar-macology 41, 791-800. (Pubitemid 32972197)
    • (2001) Neuropharmacology , vol.41 , Issue.6 , pp. 791-800
    • Giese, K.P.1    Friedman, E.2    Telliez, J.-B.3    Fedorov, N.B.4    Wines, M.5    Feig, L.A.6    Silva, A.J.7
  • 29
    • 66249122107 scopus 로고    scopus 로고
    • Mapping genes for complex traits in domestic animals and their use in breeding programmes
    • Goddard ME and Hayes BJ 2009. Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nature Reviews. Genetics 10, 381-391.
    • (2009) Nature Reviews. Genetics , vol.10 , pp. 381-391
    • Goddard, M.E.1    Hayes, B.J.2
  • 31
    • 34249857891 scopus 로고    scopus 로고
    • Cattle selected for lower residual feed intake have reduced daily methane production
    • DOI 10.2527/jas.2006-236
    • Hegarty RS, Goopy JP, Herd RM and McCorkell B 2007. Cattle selected for lower residual feed intake have reduced daily methane production. Journal of Animal Science 85, 1479-1486. (Pubitemid 46861494)
    • (2007) Journal of Animal Science , vol.85 , Issue.6 , pp. 1479-1486
    • Hegarty, R.S.1    Goopy, J.P.2    Herd, R.M.3    McCorkell, B.4
  • 33
    • 9744271816 scopus 로고    scopus 로고
    • A genome scan for quantitative trait loci and imprinted regions affecting reproduction in pigs
    • Holl JW, Cassady JP, Pomp D and Johnson RK 2004. A genome scan for quantitative trait loci and imprinted regions affecting reproduction in pigs. Journal of Animal Science 82, 3421-3429. (Pubitemid 39584163)
    • (2004) Journal of Animal Science , vol.82 , Issue.12 , pp. 3421-3429
    • Holl, J.W.1    Cassady, J.P.2    Pomp, D.3    Johnson, R.K.4
  • 35
    • 3943073683 scopus 로고    scopus 로고
    • Imprinting of Nesp55gene in cattle
    • Khatib H 2004. Imprinting of Nesp55gene in cattle. Mammalian Genome 15, 663-667.
    • (2004) Mammalian Genome , vol.15 , pp. 663-667
    • Khatib, H.1
  • 36
    • 2942560671 scopus 로고    scopus 로고
    • Lineage-specific imprinting and evolution of the zinc-finger gene ZIM2
    • DOI 10.1016/j.ygeno.2004.02.007, PII S088875430400059X
    • Kim J, Bergmann A, Lucas S, Stone R and Stubbs L 2004a. Lineage-specific imprinting and evolution of the zinc-finger gene ZIM2. Genomics 84, 47-58. (Pubitemid 38760129)
    • (2004) Genomics , vol.84 , Issue.1 , pp. 47-58
    • Kim, J.1    Bergmann, A.2    Lucas, S.3    Stone, R.4    Stubbs, L.5
  • 37
    • 2942718759 scopus 로고    scopus 로고
    • Polar overdominant inheritance of a DLK1polymorphism is associated with growth and fatness in pigs
    • Kim KS, Kim JJ, Dekkers JC and Rothschild MF 2004b. Polar overdominant inheritance of a DLK1polymorphism is associated with growth and fatness in pigs. Mammalian Genome 15, 552-559.
    • (2004) Mammalian Genome , vol.15 , pp. 552-559
    • Kim, K.S.1    Kim, J.J.2    Dekkers, J.C.3    Rothschild, M.F.4
  • 39
    • 0035094764 scopus 로고    scopus 로고
    • Variation is the spice of life
    • DOI 10.1038/85776
    • Kruglyak L and Nickerson DA 2001. Variation is the spice of life. Nature Genetics 27, 234-236. (Pubitemid 32201838)
    • (2001) Nature Genetics , vol.27 , Issue.3 , pp. 234-236
    • Kruglyak, L.1    Nickerson, D.A.2
  • 40
    • 67651108806 scopus 로고    scopus 로고
    • The genetics of quantitative traits: Challenges and prospects
    • Mackay TF, Stone EA and Ayroles JF 2009. The genetics of quantitative traits: challenges and prospects. Nature Reviews. Genetics 10, 565-577.
    • (2009) Nature Reviews. Genetics , vol.10 , pp. 565-577
    • MacKay, T.F.1    Stone, E.A.2    Ayroles, J.F.3
  • 43
    • 0021139084 scopus 로고
    • Completion of mouse embryogenesis requires both the maternal and paternal genomes
    • McGrath J and Solter D 1984. Completion of mouse embryogenesis requires both the maternal and paternal genomes. Cell 37, 179-183. (Pubitemid 14079849)
    • (1984) Cell , vol.37 , Issue.1 , pp. 179-183
    • McGrath, J.1    Solter, D.2
  • 46
    • 0035983155 scopus 로고    scopus 로고
    • Results of a whole genome scan targeting QTL for growth and carcass traits in a Piétrain x Large White intercross
    • Nezer C, Moreau L, Wagenaar D and Georges M 2002. Results of a whole genome scan targeting QTL for growth and carcass traits in a Pietrain x Large White intercross. Genetics Selection Evolution 34, 371-387. (Pubitemid 34774111)
    • (2002) Genetics Selection Evolution , vol.34 , Issue.3 , pp. 371-387
    • Nezer, C.1    Moreau, L.2    Wagenaar, D.3    Georges, M.4
  • 49
    • 52049107806 scopus 로고    scopus 로고
    • Reciprocally imprinted genes and the response to selection on one sex
    • Patten MM and Haig D 2008. Reciprocally imprinted genes and the response to selection on one sex. Genetics 179, 1389-1394.
    • (2008) Genetics , vol.179 , pp. 1389-1394
    • Patten, M.M.1    Haig, D.2
  • 52
    • 0035234557 scopus 로고    scopus 로고
    • Genomic imprinting: Parental influence on the genome
    • DOI 10.1038/35047554
    • Reik W and Walter J 2001. Genomic imprinting: parental influence on the genome. Nature Reviews. Genetics 2, 21-32. (Pubitemid 33674766)
    • (2001) Nature Reviews Genetics , vol.2 , Issue.1 , pp. 21-32
    • Reik, W.1    Walter, J.2
  • 53
    • 34447286178 scopus 로고    scopus 로고
    • From QTL to QTN identification in livestock - Winning by points rather than knock-out: A review
    • DOI 10.1111/j.1365-2052.2007.01640.x
    • Ron M and Weller JI 2007. From QTL to QTN identification in livestock-winning by points rather than knock-out: a review. Animal Genetics 38, 429-439. (Pubitemid 47480951)
    • (2007) Animal Genetics , vol.38 , Issue.5 , pp. 429-439
    • Ron, M.1    Weller, J.I.2
  • 54
    • 0005136514 scopus 로고    scopus 로고
    • Basics of gametic imprinting
    • Ruvinsky A 1999. Basics of gametic imprinting. Journal of Animal Science 77 (suppl. 2), 228-237. (Pubitemid 129269749)
    • (1998) Journal of dairy science , vol.82 , Issue.SUPPL. 2 , pp. 228-237
    • Ruvinsky, A.1
  • 55
    • 4344668732 scopus 로고    scopus 로고
    • Genetic parameters and breed differences for feed efficiency, growth and body composition traits of young beef bulls
    • Schnekel FS, Miller SP and Wilton JW 2004. Genetic parameters and breed differences for feed efficiency, growth and body composition traits of young beef bulls. Canadian Journal of Animal Science 84, 177-185.
    • (2004) Canadian Journal of Animal Science , vol.84 , pp. 177-185
    • Schnekel, F.S.1    Miller, S.P.2    Wilton, J.W.3
  • 57
    • 44049087025 scopus 로고    scopus 로고
    • Identification of polymorphisms influencing feed intake and efficiency in beef cattle
    • Sherman EL, Nkrumah JD, Murdoch BM and Moore SS 2008. Identification of polymorphisms influencing feed intake and efficiency in beef cattle. Animal Genetics 39, 225-231.
    • (2008) Animal Genetics , vol.39 , pp. 225-231
    • Sherman, E.L.1    Nkrumah, J.D.2    Murdoch, B.M.3    Moore, S.S.4
  • 58
    • 0037274704 scopus 로고    scopus 로고
    • Mosaicism of solid gold supports the causality of a noncoding A-to-G transition in the determinism of the callipyge phenotype
    • Smit M, Segers K, Carrascosa LG, Shay T, Baraldi F, Gyapay G, Snowder G, Georges M, Cockett N and Charlier C 2003. Mosaicism of Solid Gold supports the causality of a noncoding A-to-G transition in the determinism of the callipyge phenotype. Genetics 163, 453-456. (Pubitemid 36222687)
    • (2003) Genetics , vol.163 , Issue.1 , pp. 453-456
    • Smit, M.1    Segers, K.2    Carrascosa, L.G.3    Shay, T.4    Baraldi, F.5    Gyapay, G.6    Snowder, G.7    Georges, M.8    Cockett, N.9    Charlier, C.10
  • 59
    • 0021237658 scopus 로고
    • Development of reconstituted mouse eggs suggests imprinting of the genome during gametogenesis
    • Surani MA, Barton SC and Norris ML 1984. Development of reconstituted mouse eggs suggests imprinting of the genome during gametogenesis. Nature 308, 548-550.
    • (1984) Nature , vol.308 , pp. 548-550
    • Surani, M.A.1    Barton, S.C.2    Norris, M.L.3
  • 60
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M and Kumar S 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology Evolution 24, 1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 61
    • 70350274628 scopus 로고    scopus 로고
    • The effects of single and epistatic quantitative trait loci for fatty acid composition in a Meishan x Duroc crossbred population
    • Uemoto Y, Sato S, Ohnishi C, Terai S, Komatsuda A and Kobayashi E 2009. The effects of single and epistatic quantitative trait loci for fatty acid composition in a Meishan x Duroc crossbred population. Journal of Animal Science 87, 3470-3476.
    • (2009) Journal of Animal Science , vol.87 , pp. 3470-3476
    • Uemoto, Y.1    Sato, S.2    Ohnishi, C.3    Terai, S.4    Komatsuda, A.5    Kobayashi, E.6
  • 62
    • 0035839754 scopus 로고    scopus 로고
    • The human homologue (PEG3) of the mouse paternally expressed gene 3 (Peg3) is maternally imprinted but not mutated in women with familial recurrent hydatidiform molar pregnancies
    • DOI 10.1016/S1071-5576(01)00129-0, PII S1071557601001290
    • Van den Veyver IB, Norman B, Tran CQ, Bourjac J and Slim R 2001. The human homologue (PEG3) of the mouse paternally expressed gene 3 (Peg3) is maternally imprinted but not mutated in women with familial recurrent hydatidiform molar pregnancies. Journal of Society for Gynecologic and Investigation 8, 305-313. (Pubitemid 33035932)
    • (2001) Journal of the Society for Gynecologic Investigation , vol.8 , Issue.5 , pp. 305-313
    • Van Den Veyver, I.B.1    Norman, B.2    Tran, C.Q.3    Bourjac, J.4    Slim, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.