-
2
-
-
0036108484
-
3D domain swapping: As domains continue to swap
-
Liu Y, Eisenberg D (2002) 3D domain swapping: as domains continue to swap. Protein Sci 11: 1285-1299.
-
(2002)
Protein Sci
, vol.11
, pp. 1285-1299
-
-
Liu, Y.1
Eisenberg, D.2
-
3
-
-
0031305240
-
Crystal structure of the complex of diphtheria toxin with an extracellular fragment of its receptor
-
Louie GV, Yang W, Bowman ME, Choe S (1997) Crystal structure of the complex of diphtheria toxin with an extracellular fragment of its receptor. Mol Cell 1: 67-78.
-
(1997)
Mol Cell
, vol.1
, pp. 67-78
-
-
Louie, G.V.1
Yang, W.2
Bowman, M.E.3
Choe, S.4
-
5
-
-
0025375042
-
SgrAI, a novel class-II restriction endonuclease from Streptomyces griseus recognizing the octanucleotide sequence 59-CR/CCGGYG-39 [corrected]
-
Tautz N, Kaluza K, Frey B, Jarsch M, Schmitz GG, et al. (1990) SgrAI, a novel class-II restriction endonuclease from Streptomyces griseus recognizing the octanucleotide sequence 59-CR/CCGGYG-39 [corrected]. Nucleic Acids Res 18: 3087.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 3087
-
-
Tautz, N.1
Kaluza, K.2
Frey, B.3
Jarsch, M.4
Schmitz, G.G.5
-
6
-
-
0033579567
-
Reactions of type II restriction endonucleases with 8-base pair recognition sites
-
Bilcock DT, Daniels LE, Bath AJ, Halford SE (1999) Reactions of type II restriction endonucleases with 8-base pair recognition sites. J Biol Chem 274: 36379-36386.
-
(1999)
J Biol Chem
, vol.274
, pp. 36379-36386
-
-
Bilcock, D.T.1
Daniels, L.E.2
Bath, A.J.3
Halford, S.E.4
-
7
-
-
0037470637
-
Subunit assembly for DNA cleavage by restriction endonuclease SgrAI
-
Daniels LE, Wood KM, Scott DJ, Halford SE (2003) Subunit assembly for DNA cleavage by restriction endonuclease SgrAI. J Mol Biol 327: 579-591.
-
(2003)
J Mol Biol
, vol.327
, pp. 579-591
-
-
Daniels, L.E.1
Wood, K.M.2
Scott, D.J.3
Halford, S.E.4
-
8
-
-
20444368444
-
Long-range communications between DNA sites by the dimeric restriction endonuclease SgrAI
-
Wood KM, Daniels LE, Halford SE (2005) Long-range communications between DNA sites by the dimeric restriction endonuclease SgrAI. J Mol Biol 350: 240-253.
-
(2005)
J Mol Biol
, vol.350
, pp. 240-253
-
-
Wood, K.M.1
Daniels, L.E.2
Halford, S.E.3
-
9
-
-
0037022273
-
Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease
-
Bitinaite J, Schildkraut I (2002) Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease. Proc Natl Acad Sci U S A 99: 1164-1169.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 1164-1169
-
-
Bitinaite, J.1
Schildkraut, I.2
-
10
-
-
0141959260
-
Kinetic analysis of the coordinated interaction of SgrAI restriction endonuclease with different DNA targets
-
Hingorani-Varma K, Bitinaite J (2003) Kinetic analysis of the coordinated interaction of SgrAI restriction endonuclease with different DNA targets. J Biol Chem 278: 40392-40399.
-
(2003)
J Biol Chem
, vol.278
, pp. 40392-40399
-
-
Hingorani-Varma, K.1
Bitinaite, J.2
-
11
-
-
0035883723
-
Structure and function of type II restriction endonucleases
-
Pingoud A, Jeltsch A (2001) Structure and function of type II restriction endonucleases. Nucleic Acids Res 29: 3705-3727.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3705-3727
-
-
Pingoud, A.1
Jeltsch, A.2
-
13
-
-
0035968257
-
Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loops
-
Friedhoff P, Lurz R, Luder G, Pingoud A (2001) Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loops. Journal of Biological Chemistry 276: 23581-23588.
-
(2001)
Journal of Biological Chemistry
, vol.276
, pp. 23581-23588
-
-
Friedhoff, P.1
Lurz, R.2
Luder, G.3
Pingoud, A.4
-
14
-
-
0033520420
-
The Cfr10I restriction enzyme is functional as a tetramer
-
Siksnys V, Skirgaila R, Sasnauskas G, Urbanke C, Cherny D, et al. (1999) The Cfr10I restriction enzyme is functional as a tetramer. Journal of Molecular Biology 291: 1105-1118.
-
(1999)
Journal of Molecular Biology
, vol.291
, pp. 1105-1118
-
-
Siksnys, V.1
Skirgaila, R.2
Sasnauskas, G.3
Urbanke, C.4
Cherny, D.5
-
15
-
-
0033818703
-
Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA
-
Deibert M, Grazulis S, Sasnauskas G, Siksnys V, Huber R (2000) Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA. Nature Structural Biology 7: 792-799.
-
(2000)
Nature Structural Biology
, vol.7
, pp. 792-799
-
-
Deibert, M.1
Grazulis, S.2
Sasnauskas, G.3
Siksnys, V.4
Huber, R.5
-
16
-
-
52649102578
-
The structure of SgrAI bound to DNA; recognition of an 8 base pair target
-
Dunten PW, Little EJ, Gregory MT, Manohar VM, Dalton M, et al. (2008) The structure of SgrAI bound to DNA; recognition of an 8 base pair target. Nucleic Acids Res 36: 5405-5416.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5405-5416
-
-
Dunten, P.W.1
Little, E.J.2
Gregory, M.T.3
Manohar, V.M.4
Dalton, M.5
-
17
-
-
77957915686
-
Activation of DNA cleavage by oligomerization of DNA bound SgrAI
-
Park CK, Stiteler A, Shah S, Ghare MI, Bitinaite J, et al. (2010) Activation of DNA cleavage by oligomerization of DNA bound SgrAI. Biochemistry 49: 8818-8830.
-
(2010)
Biochemistry
, vol.49
, pp. 8818-8830
-
-
Park, C.K.1
Stiteler, A.2
Shah, S.3
Ghare, M.I.4
Bitinaite, J.5
-
18
-
-
28644435380
-
A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA
-
Vanamee ES, Viadiu H, Kucera R, Dorner L, Picone S, et al. (2005) A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA. Embo J 24: 4198-4208.
-
(2005)
Embo J
, vol.24
, pp. 4198-4208
-
-
Vanamee, E.S.1
Viadiu, H.2
Kucera, R.3
Dorner, L.4
Picone, S.5
-
19
-
-
35148841533
-
A switch in the mechanism of communication between the two DNA-binding sites in the SfiI restriction endonuclease
-
Bellamy SR, Milsom SE, Kovacheva YS, Sessions RB, Halford SE (2007) A switch in the mechanism of communication between the two DNA-binding sites in the SfiI restriction endonuclease. J Mol Biol 373: 1169-1183.
-
(2007)
J Mol Biol
, vol.373
, pp. 1169-1183
-
-
Bellamy, S.R.1
Milsom, S.E.2
Kovacheva, Y.S.3
Sessions, R.B.4
Halford, S.E.5
-
20
-
-
2342538957
-
Dynamics of DNA loop capture by the SfiI restriction endonuclease on supercoiled and relaxed DNA
-
Embleton ML, Vologodskii AV, Halford SE (2004) Dynamics of DNA loop capture by the SfiI restriction endonuclease on supercoiled and relaxed DNA. J Mol Biol 339: 53-66.
-
(2004)
J Mol Biol
, vol.339
, pp. 53-66
-
-
Embleton, M.L.1
Vologodskii, A.V.2
Halford, S.E.3
-
21
-
-
16244422033
-
Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: Oligomeric structurestability- function correlations
-
Zaremba M, Sasnauskas G, Urbanke C, Siksnys V (2005) Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: oligomeric structurestability- function correlations. J Mol Biol 348: 459-478.
-
(2005)
J Mol Biol
, vol.348
, pp. 459-478
-
-
Zaremba, M.1
Sasnauskas, G.2
Urbanke, C.3
Siksnys, V.4
-
22
-
-
33749579918
-
Allosteric communication network in the tetrameric restriction endonuclease Bse634I
-
Zaremba M, Sasnauskas G, Urbanke C, Siksnys V (2006) Allosteric communication network in the tetrameric restriction endonuclease Bse634I. J Mol Biol 363: 800-812.
-
(2006)
J Mol Biol
, vol.363
, pp. 800-812
-
-
Zaremba, M.1
Sasnauskas, G.2
Urbanke, C.3
Siksnys, V.4
-
24
-
-
0001483424
-
Structural versatility of bovine ribonuclease A. Distinct conformers of trimeric and tetrameric aggregates of the enzyme
-
Gotte G, Bertoldi M, Libonati M (1999) Structural versatility of bovine ribonuclease A. Distinct conformers of trimeric and tetrameric aggregates of the enzyme. Eur J Biochem 265: 680-687.
-
(1999)
Eur J Biochem
, vol.265
, pp. 680-687
-
-
Gotte, G.1
Bertoldi, M.2
Libonati, M.3
-
25
-
-
0035127031
-
A domain-swapped RNase A dimer with implications for amyloid formation
-
Liu Y, Gotte G, Libonati M, Eisenberg D (2001) A domain-swapped RNase A dimer with implications for amyloid formation. Nat Struct Biol 8: 211-214.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 211-214
-
-
Liu, Y.1
Gotte, G.2
Libonati, M.3
Eisenberg, D.4
-
26
-
-
0036145653
-
Structures of the two 3D domain-swapped RNase A trimers
-
Liu Y, Gotte G, Libonati M, Eisenberg D (2002) Structures of the two 3D domain-swapped RNase A trimers. Protein Sci 11: 371-380.
-
(2002)
Protein Sci
, vol.11
, pp. 371-380
-
-
Liu, Y.1
Gotte, G.2
Libonati, M.3
Eisenberg, D.4
-
27
-
-
0032584210
-
The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-A resolution
-
Liu Y, Hart PJ, Schlunegger MP, Eisenberg D (1998) The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-A resolution. Proc Natl Acad Sci U S A 95: 3437-3442.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 3437-3442
-
-
Liu, Y.1
Hart, P.J.2
Schlunegger, M.P.3
Eisenberg, D.4
-
28
-
-
0033773675
-
Dimer formation by a ''monomeric'' protein
-
Park C, Raines RT (2000) Dimer formation by a ''monomeric'' protein. Protein Sci 9: 2026-2033.
-
(2000)
Protein Sci
, vol.9
, pp. 2026-2033
-
-
Park, C.1
Raines, R.T.2
-
29
-
-
0029833445
-
The activity on double-stranded RNA of aggregates of ribonuclease A higher than dimers increases as a function of the size of the aggregates?
-
Libonati M, Bertoldi M, Sorrentino S (1996) The activity on double-stranded RNA of aggregates of ribonuclease A higher than dimers increases as a function of the size of the aggregates. Biochem J 318(Pt 1): 287-290.
-
(1996)
Biochem J
, vol.318
, Issue.PART 1
, pp. 287-290
-
-
Libonati, M.1
Bertoldi, M.2
Sorrentino, S.3
-
30
-
-
0023802428
-
Co-operativity in seminal ribonuclease function. Kinetic studies
-
Piccoli R, Di Donato A, D'Alessio G (1988) Co-operativity in seminal ribonuclease function. Kinetic studies. Biochem J 253: 329-336.
-
(1988)
Biochem J
, vol.253
, pp. 329-336
-
-
Piccoli, R.1
Di Donato, A.2
D'Alessio, G.3
-
31
-
-
0028796335
-
The antitumor action of seminal ribonuclease and its quaternary conformations
-
Cafaro V, De Lorenzo C, Piccoli R, Bracale A, Mastronicola MR, et al. (1995) The antitumor action of seminal ribonuclease and its quaternary conformations. FEBS Lett 359: 31-34.
-
(1995)
FEBS Lett
, vol.359
, pp. 31-34
-
-
Cafaro, V.1
De Lorenzo, C.2
Piccoli, R.3
Bracale, A.4
Mastronicola, M.R.5
-
32
-
-
34247876216
-
USER friendly DNA engineering and cloning method by uracil excision
-
Bitinaite J, Rubino M, Varma KH, Schildkraut I, Vaisvila R, et al. (2007) USER friendly DNA engineering and cloning method by uracil excision. Nucleic Acids Res 35: 1992-2002.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 1992-2002
-
-
Bitinaite, J.1
Rubino, M.2
Varma, K.H.3
Schildkraut, I.4
Vaisvila, R.5
-
33
-
-
0036894880
-
Structural basis for uracil recognition by archaeal family B DNA polymerases
-
Fogg MJ, Pearl LH, Connolly BA (2002) Structural basis for uracil recognition by archaeal family B DNA polymerases. Nat Struct Biol 9: 922-927.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 922-927
-
-
Fogg, M.J.1
Pearl, L.H.2
Connolly, B.A.3
-
34
-
-
0024332378
-
Purification and characterization of 5-hydroxymethyluracil-DNA glycosylase from calf thymus. Its possible role in the maintenance of methylated cytosine residues
-
Cannon-Carlson SV, Gokhale H, Teebor GW (1989) Purification and characterization of 5-hydroxymethyluracil-DNA glycosylase from calf thymus. Its possible role in the maintenance of methylated cytosine residues. J Biol Chem 264: 13306-13312.
-
(1989)
J Biol Chem
, vol.264
, pp. 13306-13312
-
-
Cannon-Carlson, S.V.1
Gokhale, H.2
Teebor, G.W.3
-
35
-
-
44949289693
-
Crystallization of DNA binding proteins with oligodeoxynucleotides
-
Aggarwal AK (1990) Crystallization of DNA binding proteins with oligodeoxynucleotides. Methods: A Companion to Methods in Enzymology 1: 83-90.
-
(1990)
Methods: A Companion to Methods in Enzymology
, vol.1
, pp. 83-90
-
-
Aggarwal, A.K.1
-
38
-
-
0035788107
-
Pushing the boundaries of molecular replacement with maximum likelihood
-
Read RJ (2001) Pushing the boundaries of molecular replacement with maximum likelihood. Acta Crystallogr D Biol Crystallogr 57: 1373-1382.
-
(2001)
Acta Crystallogr D Biol Crystallogr
, vol.57
, pp. 1373-1382
-
-
Read, R.J.1
-
39
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, et al. (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallographica Section D: Biological Crystallography 54: 905-921.
-
(1998)
Acta Crystallographica Section D: Biological Crystallography
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
-
40
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams PD, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, et al. (2002) PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr 58: 1948-1954.
-
(2002)
Acta Crystallogr D Biol Crystallogr
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
-
41
-
-
0032897075
-
Efficient anisotropic refinement of macromolecular structures using FFT?
-
Murshudov GN, Vagin AA, Lebedev A, Wilson KS, Dodson EJ (1999) Efficient anisotropic refinement of macromolecular structures using FFT. Acta Crystallogr D Biol Crystallogr 55(Pt 1): 247-255.
-
(1999)
Acta Crystallogr D Biol Crystallogr
, vol.55
, Issue.PART 1
, pp. 247-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Lebedev, A.3
Wilson, K.S.4
Dodson, E.J.5
-
42
-
-
0032790081
-
XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density
-
McRee DE (1999) XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density. Journal of Structural Biology 125: 156-165.
-
(1999)
Journal of Structural Biology
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
43
-
-
84893482610
-
A solution for the best rotation to relate two sets of vectors
-
Kabsch W (1976) A solution for the best rotation to relate two sets of vectors. Acta Cryst A32: 922-923.
-
(1976)
Acta Cryst
, vol.A32
, pp. 922-923
-
-
Kabsch, W.1
-
46
-
-
0035957061
-
Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: A study using fluorescent oligonucleotides and fluorescence polarization
-
Reid SL, Parry D, Liu HH, Connolly BA (2001) Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: a study using fluorescent oligonucleotides and fluorescence polarization. Biochemistry 40: 2484-2494.
-
(2001)
Biochemistry
, vol.40
, pp. 2484-2494
-
-
Reid, S.L.1
Parry, D.2
Liu, H.H.3
Connolly, B.A.4
|