메뉴 건너뛰기




Volumn 350, Issue 2, 2005, Pages 240-253

Long-range communications between DNA sites by the dimeric restriction endonuclease SgrAI

Author keywords

DNA synapsis; DNA topology; DNA protein interaction; Protein protein interaction; Restriction enzyme

Indexed keywords

CATENANE; DIMER; DNA; ENDONUCLEASE; TETRAMER;

EID: 20444368444     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.04.053     Document Type: Article
Times cited : (22)

References (53)
  • 1
    • 0034877122 scopus 로고    scopus 로고
    • Hopping, jumping and looping by restriction enzymes
    • S.E. Halford Hopping, jumping and looping by restriction enzymes Biochem. Soc. Trans. 29 2001 363 373
    • (2001) Biochem. Soc. Trans. , vol.29 , pp. 363-373
    • Halford, S.E.1
  • 2
    • 0035883723 scopus 로고    scopus 로고
    • Structure and function of type II restriction endonucleases
    • A. Pingoud, and A. Jeltsch Structure and function of type II restriction endonucleases Nucl. Acids Res. 29 2001 3707 3727
    • (2001) Nucl. Acids Res. , vol.29 , pp. 3707-3727
    • Pingoud, A.1    Jeltsch, A.2
  • 4
    • 0022381905 scopus 로고
    • Facilitated diffusion during catalysis by EcoRI endonuclease: Nonspecific interactions in EcoRI catalysis
    • B.J. Terry, W.E. Jack, and P. Modrich Facilitated diffusion during catalysis by EcoRI endonuclease: nonspecific interactions in EcoRI catalysis J. Biol. Chem. 260 1985 13130 13137
    • (1985) J. Biol. Chem. , vol.260 , pp. 13130-13137
    • Terry, B.J.1    Jack, W.E.2    Modrich, P.3
  • 5
    • 0034387984 scopus 로고    scopus 로고
    • One- and three-dimensional pathways for proteins to reach specific DNA sites
    • N.P. Stanford, M.D. Szczelkun, J.F. Marko, and S.E. Halford One- and three-dimensional pathways for proteins to reach specific DNA sites EMBO J. 19 2000 6546 6557
    • (2000) EMBO J. , vol.19 , pp. 6546-6557
    • Stanford, N.P.1    Szczelkun, M.D.2    Marko, J.F.3    Halford, S.E.4
  • 6
    • 0344011130 scopus 로고    scopus 로고
    • Diversity of type II restriction endonucleases that require two DNA recognition sites
    • M. Mucke, D.H. Kruger, and M. Reuter Diversity of type II restriction endonucleases that require two DNA recognition sites Nucl. Acids Res. 31 2003 6079 6084
    • (2003) Nucl. Acids Res. , vol.31 , pp. 6079-6084
    • Mucke, M.1    Kruger, D.H.2    Reuter, M.3
  • 8
    • 3042785825 scopus 로고    scopus 로고
    • One recognition sequence, seven restriction enzymes, five reaction mechanisms
    • D.M. Gowers, S.R.W. Bellamy, and S.E. Halford One recognition sequence, seven restriction enzymes, five reaction mechanisms Nucl. Acids Res. 32 2004 3469 3479
    • (2004) Nucl. Acids Res. , vol.32 , pp. 3469-3479
    • Gowers, D.M.1    Bellamy, S.R.W.2    Halford, S.E.3
  • 9
    • 16644399511 scopus 로고    scopus 로고
    • Type IIE and IIF restriction endonucleases interacting with two recognition sites on DNA
    • O.V. Kirsanova, V.B. Baskunov, and E.S. Gromova Type IIE and IIF restriction endonucleases interacting with two recognition sites on DNA Mol. Biol. 38 2004 886 900
    • (2004) Mol. Biol. , vol.38 , pp. 886-900
    • Kirsanova, O.V.1    Baskunov, V.B.2    Gromova, E.S.3
  • 10
    • 0037389511 scopus 로고    scopus 로고
    • A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
    • R.J. Roberts, M. Belfort, T. Bestor, A.S. Bhagwat, T.A. Bickle, and J. Bitinaite A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes Nucl. Acids Res. 31 2003 1805 1812
    • (2003) Nucl. Acids Res. , vol.31 , pp. 1805-1812
    • Roberts, R.J.1    Belfort, M.2    Bestor, T.3    Bhagwat, A.S.4    Bickle, T.A.5    Bitinaite, J.6
  • 11
    • 0034885432 scopus 로고    scopus 로고
    • Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement
    • Q. Huai, J.D. Colandene, M.D. Topal, and H. Ke Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement Nature Struct. Biol. 8 2001 665 669
    • (2001) Nature Struct. Biol. , vol.8 , pp. 665-669
    • Huai, Q.1    Colandene, J.D.2    Topal, M.D.3    Ke, H.4
  • 12
    • 0035902832 scopus 로고    scopus 로고
    • DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites
    • M.L. Embleton, V. Siksnys, and S.E. Halford DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites J. Mol. Biol. 311 2001 503 514
    • (2001) J. Mol. Biol. , vol.311 , pp. 503-514
    • Embleton, M.L.1    Siksnys, V.2    Halford, S.E.3
  • 13
    • 0035968257 scopus 로고    scopus 로고
    • Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loops
    • P. Friedhoff, R. Lurz, G. Lueder, and A. Pingoud Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loops J. Biol. Chem. 276 2001 23581 23588
    • (2001) J. Biol. Chem. , vol.276 , pp. 23581-23588
    • Friedhoff, P.1    Lurz, R.2    Lueder, G.3    Pingoud, A.4
  • 14
    • 0037040271 scopus 로고    scopus 로고
    • Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA
    • A.J. Bath, S.E. Milsom, N.A. Gormley, and S.E. Halford Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA J. Biol. Chem. 277 2002 4024 4033
    • (2002) J. Biol. Chem. , vol.277 , pp. 4024-4033
    • Bath, A.J.1    Milsom, S.E.2    Gormley, N.A.3    Halford, S.E.4
  • 15
    • 0028988946 scopus 로고
    • The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence
    • L.M. Wentzell, T.J. Nobbs, and S.E. Halford The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence J. Mol. Biol. 248 1995 581 595
    • (1995) J. Mol. Biol. , vol.248 , pp. 581-595
    • Wentzell, L.M.1    Nobbs, T.J.2    Halford, S.E.3
  • 17
    • 0033818703 scopus 로고    scopus 로고
    • Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA
    • M. Deibert, S. Grazulis, G. Sasnauskas, V. Siksnys, and R. Huber Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA Nature Struct. Biol. 7 2000 792 799
    • (2000) Nature Struct. Biol. , vol.7 , pp. 792-799
    • Deibert, M.1    Grazulis, S.2    Sasnauskas, G.3    Siksnys, V.4    Huber, R.5
  • 18
    • 0037040190 scopus 로고    scopus 로고
    • The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence
    • N.A. Gormley, A.L. Hillberg, and S.E. Halford The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence J. Biol. Chem. 277 2002 4034 4041
    • (2002) J. Biol. Chem. , vol.277 , pp. 4034-4041
    • Gormley, N.A.1    Hillberg, A.L.2    Halford, S.E.3
  • 20
    • 0029091376 scopus 로고
    • DNA cleavage at two recognition sites by the SfiI restriction endonuclease: Salt dependence of cis and trans interactions between distant DNA sites
    • T.J. Nobbs, and S.E. Halford DNA cleavage at two recognition sites by the SfiI restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sites J. Mol. Biol. 252 1995 399 411
    • (1995) J. Mol. Biol. , vol.252 , pp. 399-411
    • Nobbs, T.J.1    Halford, S.E.2
  • 21
    • 0029978713 scopus 로고    scopus 로고
    • Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease
    • M.D. Szczelkun, and S.E. Halford Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease EMBO J. 15 1996 1460 1469
    • (1996) EMBO J. , vol.15 , pp. 1460-1469
    • Szczelkun, M.D.1    Halford, S.E.2
  • 22
    • 0024582917 scopus 로고
    • Interaction of proteins located at a distance along DNA: Mechanism of target immunity in the Mu DNA strand transfer reaction
    • K. Adzuma, and K. Mizuuchi Interaction of proteins located at a distance along DNA: mechanism of target immunity in the Mu DNA strand transfer reaction Cell 57 1989 41 47
    • (1989) Cell , vol.57 , pp. 41-47
    • Adzuma, K.1    Mizuuchi, K.2
  • 23
    • 0036656143 scopus 로고    scopus 로고
    • How to get from a to B: Strategies for analysing protein motion on DNA
    • S.E. Halford, and M.D. Szczelkun How to get from A to B: strategies for analysing protein motion on DNA Eur. J. Biophys. 31 2002 257 267
    • (2002) Eur. J. Biophys. , vol.31 , pp. 257-267
    • Halford, S.E.1    Szczelkun, M.D.2
  • 24
    • 0034607553 scopus 로고    scopus 로고
    • Alternative geometries of DNA looping: An analysis using the SfiI endonuclease
    • M.A. Watson, D.M. Gowers, and S.E. Halford Alternative geometries of DNA looping: an analysis using the SfiI endonuclease J. Mol. Biol. 298 2000 461 475
    • (2000) J. Mol. Biol. , vol.298 , pp. 461-475
    • Watson, M.A.1    Gowers, D.M.2    Halford, S.E.3
  • 25
    • 16244422033 scopus 로고    scopus 로고
    • Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: Oligomeric structure-stability-function correlations
    • M. Zaremba, G. Sasnauskas, C. Urbanke, and V. Siksnys Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: oligomeric structure-stability-function correlations J. Mol. Biol. 348 2005 459 478
    • (2005) J. Mol. Biol. , vol.348 , pp. 459-478
    • Zaremba, M.1    Sasnauskas, G.2    Urbanke, C.3    Siksnys, V.4
  • 26
    • 0032983155 scopus 로고    scopus 로고
    • Specificity from the synapsis of DNA elements by the SfiI endonuclease
    • M.L. Embleton, S.A. Williams, M.A. Watson, and S.E. Halford Specificity from the synapsis of DNA elements by the SfiI endonuclease J. Mol. Biol. 289 1999 785 797
    • (1999) J. Mol. Biol. , vol.289 , pp. 785-797
    • Embleton, M.L.1    Williams, S.A.2    Watson, M.A.3    Halford, S.E.4
  • 27
    • 0025375042 scopus 로고
    • SgrAI, a novel class-II restriction endonuclease from Streptomyces griseus recognizing the octanucleotide sequence 5′-CR/CCGGYG-3′
    • N. Tautz, K. Kaluza, B. Frey, M. Jarsch, G.G. Schmitz, and C. Kessler SgrAI, a novel class-II restriction endonuclease from Streptomyces griseus recognizing the octanucleotide sequence 5′-CR/CCGGYG-3′ Nucl. Acids Res. 18 1990 3087
    • (1990) Nucl. Acids Res. , vol.18 , pp. 3087
    • Tautz, N.1    Kaluza, K.2    Frey, B.3    Jarsch, M.4    Schmitz, G.G.5    Kessler, C.6
  • 28
    • 0033579567 scopus 로고    scopus 로고
    • Reactions of type II restriction endonucleases with 8-base pair recognition sites
    • D.T. Bilcock, L.E. Daniels, A.J. Bath, and S.E. Halford Reactions of type II restriction endonucleases with 8-base pair recognition sites J. Biol. Chem. 274 1999 36379 36386
    • (1999) J. Biol. Chem. , vol.274 , pp. 36379-36386
    • Bilcock, D.T.1    Daniels, L.E.2    Bath, A.J.3    Halford, S.E.4
  • 29
    • 0037470637 scopus 로고    scopus 로고
    • Subunit assembly for DNA cleavage by restriction endonuclease SgrAI
    • L.E. Daniels, K.M. Wood, D.J. Scott, and S.E. Halford Subunit assembly for DNA cleavage by restriction endonuclease SgrAI J. Mol. Biol. 327 2003 579 591
    • (2003) J. Mol. Biol. , vol.327 , pp. 579-591
    • Daniels, L.E.1    Wood, K.M.2    Scott, D.J.3    Halford, S.E.4
  • 30
    • 0037022273 scopus 로고    scopus 로고
    • Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease
    • J. Bitinaite, and I. Schildkraut Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease Proc. Natl Acad. Sci. USA 99 2002 1164 1169
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 1164-1169
    • Bitinaite, J.1    Schildkraut, I.2
  • 31
    • 0141959260 scopus 로고    scopus 로고
    • Kinetic analysis of the coordinated interaction of SgrAI restriction endonuclease with different DNA targets
    • K. Hingorani-Varma, and J. Bitinaite Kinetic analysis of the coordinated interaction of SgrAI restriction endonuclease with different DNA targets J. Biol. Chem. 278 2003 40392 40399
    • (2003) J. Biol. Chem. , vol.278 , pp. 40392-40399
    • Hingorani-Varma, K.1    Bitinaite, J.2
  • 33
    • 0022504314 scopus 로고
    • Relaxed specificity of the EcoRV restriction endonuclease
    • S.E. Halford, B.M. Lovelady, and S.A. McCallum Relaxed specificity of the EcoRV restriction endonuclease Gene 41 1986 173 181
    • (1986) Gene , vol.41 , pp. 173-181
    • Halford, S.E.1    Lovelady, B.M.2    McCallum, S.A.3
  • 34
    • 0024322164 scopus 로고
    • Discrimination between DNA sequences by the EcoRV restriction endonuclease
    • J.D. Taylor, and S.E. Halford Discrimination between DNA sequences by the EcoRV restriction endonuclease Biochemistry 28 1989 6198 6207
    • (1989) Biochemistry , vol.28 , pp. 6198-6207
    • Taylor, J.D.1    Halford, S.E.2
  • 35
    • 0025203657 scopus 로고
    • The energetic basis of specificity in the EcoRI endonuclease-DNA interaction
    • D.R. Lesser, M.R. Kurpiewski, and L. Jen-Jacobson The energetic basis of specificity in the EcoRI endonuclease-DNA interaction Science 250 1990 776 786
    • (1990) Science , vol.250 , pp. 776-786
    • Lesser, D.R.1    Kurpiewski, M.R.2    Jen-Jacobson, L.3
  • 36
    • 0025367454 scopus 로고
    • Accuracy of the EcoRI restriction endonuclease: Binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences
    • V. Thielking, J. Alves, A. Fliess, G. Maass, and A. Pingoud Accuracy of the EcoRI restriction endonuclease: binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences Biochemistry 29 1990 4682 4691
    • (1990) Biochemistry , vol.29 , pp. 4682-4691
    • Thielking, V.1    Alves, J.2    Fliess, A.3    Maass, G.4    Pingoud, A.5
  • 37
    • 0029147180 scopus 로고
    • Analysis of the structure of dimeric DNA catenanes by electron microscopy
    • S.D. Levene, C. Donahue, T.C. Boles, and N.R. Cozzarelli Analysis of the structure of dimeric DNA catenanes by electron microscopy Biophys. J. 69 1995 1036 1045
    • (1995) Biophys. J. , vol.69 , pp. 1036-1045
    • Levene, S.D.1    Donahue, C.2    Boles, T.C.3    Cozzarelli, N.R.4
  • 38
    • 2342538957 scopus 로고    scopus 로고
    • Dynamics of DNA loop capture by the SfiI restriction endonuclease on supercoiled and relaxed DNA
    • M.L. Embleton, A.V. Vologodskii, and S.E. Halford Dynamics of DNA loop capture by the SfiI restriction endonuclease on supercoiled and relaxed DNA J. Mol. Biol. 339 2004 53 66
    • (2004) J. Mol. Biol. , vol.339 , pp. 53-66
    • Embleton, M.L.1    Vologodskii, A.V.2    Halford, S.E.3
  • 39
    • 0029910629 scopus 로고    scopus 로고
    • Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates
    • M.D. Szczelkun, M.S. Dillingham, P. Janscak, K. Firman, and S.E. Halford Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates EMBO J. 15 1996 6335 6347
    • (1996) EMBO J. , vol.15 , pp. 6335-6347
    • Szczelkun, M.D.1    Dillingham, M.S.2    Janscak, P.3    Firman, K.4    Halford, S.E.5
  • 40
    • 0025688138 scopus 로고
    • Site-specific recombination by mutants of Tn21 resolvase with DNA recognition functions from Tn3 resolvase
    • A.J. Ackroyd, P. Avila, C.N. Parker, and S.E. Halford Site-specific recombination by mutants of Tn21 resolvase with DNA recognition functions from Tn3 resolvase J. Mol. Biol. 216 1990 633 643
    • (1990) J. Mol. Biol. , vol.216 , pp. 633-643
    • Ackroyd, A.J.1    Avila, P.2    Parker, C.N.3    Halford, S.E.4
  • 41
    • 0030985132 scopus 로고    scopus 로고
    • Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease
    • S.G. Erskine, G.S. Baldwin, and S.E. Halford Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease Biochemistry 36 1997 7567 7576
    • (1997) Biochemistry , vol.36 , pp. 7567-7576
    • Erskine, S.G.1    Baldwin, G.S.2    Halford, S.E.3
  • 42
    • 0033527546 scopus 로고    scopus 로고
    • The kinetic mechanism of EcoRI endonuclease
    • D.J. Wright, W.E. Jack, and P. Modrich The kinetic mechanism of EcoRI endonuclease J. Biol. Chem. 274 1999 31896 31902
    • (1999) J. Biol. Chem. , vol.274 , pp. 31896-31902
    • Wright, D.J.1    Jack, W.E.2    Modrich, P.3
  • 43
    • 0033616705 scopus 로고    scopus 로고
    • Plasmid DNA cleavage by MunI restriction enzyme: Single-turnover and steady-state kinetic analysis
    • G. Sasnauskas, A. Jeltsch, A. Pingoud, and V. Siksnys Plasmid DNA cleavage by MunI restriction enzyme: single-turnover and steady-state kinetic analysis Biochemistry 38 1999 4028 4036
    • (1999) Biochemistry , vol.38 , pp. 4028-4036
    • Sasnauskas, G.1    Jeltsch, A.2    Pingoud, A.3    Siksnys, V.4
  • 44
    • 17144383262 scopus 로고    scopus 로고
    • Cleavage of individual DNA strands by the different subunits of the heterodimeric restriction endonuclease BbvCI
    • S.R.W. Bellamy, S.E. Milsom, D.J. Scott, L.E. Daniels, G.G. Wilson, and S.E. Halford Cleavage of individual DNA strands by the different subunits of the heterodimeric restriction endonuclease BbvCI J. Mol. Biol 348 2005 641 653
    • (2005) J. Mol. Biol , vol.348 , pp. 641-653
    • Bellamy, S.R.W.1    Milsom, S.E.2    Scott, D.J.3    Daniels, L.E.4    Wilson, G.G.5    Halford, S.E.6
  • 46
    • 0026569359 scopus 로고
    • The activity of the EcoRV restriction endonuclease is influenced by flanking DNA sequences both inside and outside the DNA-protein complex
    • J.D. Taylor, and S.E. Halford The activity of the EcoRV restriction endonuclease is influenced by flanking DNA sequences both inside and outside the DNA-protein complex Biochemistry 31 1992 90 97
    • (1992) Biochemistry , vol.31 , pp. 90-97
    • Taylor, J.D.1    Halford, S.E.2
  • 49
    • 0037470599 scopus 로고    scopus 로고
    • The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre
    • A. Lagunavicius, G. Sasnauskas, S.E. Halford, and V. Siksnys The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre J. Mol. Biol. 326 2003 1051 1064
    • (2003) J. Mol. Biol. , vol.326 , pp. 1051-1064
    • Lagunavicius, A.1    Sasnauskas, G.2    Halford, S.E.3    Siksnys, V.4
  • 50
    • 0001268975 scopus 로고
    • Hydroxyl radical "footprinting": High-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein
    • T.D. Tullius, and B.A. Dombroski Hydroxyl radical " footprinting": high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein Proc. Natl Acad. Sci. USA 83 1986 5469 5473
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 5469-5473
    • Tullius, T.D.1    Dombroski, B.A.2
  • 52
    • 0029941285 scopus 로고    scopus 로고
    • Three-site synapsis during phage Mu DNA transposition: A critical intermediate preceding engagement of the active site
    • M.A. Watson, and G. Chaconas Three-site synapsis during phage Mu DNA transposition: a critical intermediate preceding engagement of the active site Cell 85 1996 435 445
    • (1996) Cell , vol.85 , pp. 435-445
    • Watson, M.A.1    Chaconas, G.2
  • 53
    • 0025376429 scopus 로고
    • Processive recombination by the phage Mu Gin system: Implications for the mechanism of DNA strand exchange, DNA site alignment, and enhancer action
    • R. Kanaar, A. Klippel, E. Shektman, J. Dungan, R. Kahman, and N.R. Cozzarelli Processive recombination by the phage Mu Gin system: implications for the mechanism of DNA strand exchange, DNA site alignment, and enhancer action Cell 62 1990 353 366
    • (1990) Cell , vol.62 , pp. 353-366
    • Kanaar, R.1    Klippel, A.2    Shektman, E.3    Dungan, J.4    Kahman, R.5    Cozzarelli, N.R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.