-
3
-
-
0002598414
-
Type II restriction enzymes
-
Linn S.M., Lloyd R.S., and Roberts R.J. (Eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor
-
Roberts R.J., and Halford S.E. Type II restriction enzymes. In: Linn S.M., Lloyd R.S., and Roberts R.J. (Eds). Nucleases (1993), Cold Spring Harbor Laboratory Press, Cold Spring Harbor 35-88
-
(1993)
Nucleases
, pp. 35-88
-
-
Roberts, R.J.1
Halford, S.E.2
-
4
-
-
0028932881
-
Structure and function of restriction endonucleases
-
Aggarwal A.K. Structure and function of restriction endonucleases. Curr. Opin. Struct. Biol. 5 (1995) 11-19
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 11-19
-
-
Aggarwal, A.K.1
-
5
-
-
0036440653
-
Type II restriction endonucleases
-
Perona J.J. Type II restriction endonucleases. Methods 28 (2002) 353-364
-
(2002)
Methods
, vol.28
, pp. 353-364
-
-
Perona, J.J.1
-
6
-
-
0033527546
-
The kinetic mechanism of EcoRI endonuclease
-
Wright D.J., Jack W.E., and Modrich P. The kinetic mechanism of EcoRI endonuclease. J. Biol. Chem. 274 (1999) 31896-31902
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 31896-31902
-
-
Wright, D.J.1
Jack, W.E.2
Modrich, P.3
-
7
-
-
0034629080
-
Reactions of BglI and other Type II restriction endonucleases with discontinuous recognition sites
-
Gormley N.A., Bath A.J., and Halford S.E. Reactions of BglI and other Type II restriction endonucleases with discontinuous recognition sites. J. Biol. Chem. 275 (2000) 6928-6936
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 6928-6936
-
-
Gormley, N.A.1
Bath, A.J.2
Halford, S.E.3
-
8
-
-
0030985132
-
Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease
-
Erskine S.G., Baldwin G.S., and Halford S.E. Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease. Biochemistry 36 (1997) 7567-7576
-
(1997)
Biochemistry
, vol.36
, pp. 7567-7576
-
-
Erskine, S.G.1
Baldwin, G.S.2
Halford, S.E.3
-
9
-
-
0027159254
-
The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments
-
Winkler F.K., Banner D.W., Oefner C., Tsernoglou D., Brown R.S., Heathman S.P., et al. The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments. EMBO J. 12 (1993) 1781-1795
-
(1993)
EMBO J.
, vol.12
, pp. 1781-1795
-
-
Winkler, F.K.1
Banner, D.W.2
Oefner, C.3
Tsernoglou, D.4
Brown, R.S.5
Heathman, S.P.6
-
10
-
-
0028934112
-
Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions
-
Vipond I.B., and Halford S.E. Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions. Biochemistry 34 (1995) 1113-1119
-
(1995)
Biochemistry
, vol.34
, pp. 1113-1119
-
-
Vipond, I.B.1
Halford, S.E.2
-
11
-
-
0033614808
-
Divalent metal dependence of site-specific DNA binding by EcoRV endonuclease
-
Martin A.M., Horton N.C., Luseti S., Reich N.O., and Perona J.J. Divalent metal dependence of site-specific DNA binding by EcoRV endonuclease. Biochemistry 38 (1999) 8430-8439
-
(1999)
Biochemistry
, vol.38
, pp. 8430-8439
-
-
Martin, A.M.1
Horton, N.C.2
Luseti, S.3
Reich, N.O.4
Perona, J.J.5
-
12
-
-
0035957061
-
Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: a study using fluorescent oligonucleotides and fluorescence polarization
-
Reid S.L., Parry D., Liu H.-H., and Connolly B.A. Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: a study using fluorescent oligonucleotides and fluorescence polarization. Biochemistry 40 (2001) 2484-2494
-
(2001)
Biochemistry
, vol.40
, pp. 2484-2494
-
-
Reid, S.L.1
Parry, D.2
Liu, H.-H.3
Connolly, B.A.4
-
13
-
-
0029048413
-
Structure of BamHI endonuclease bound to DNA: partial folding and unfolding on DNA binding
-
Newman M., Strzelecka T., Dorner L.F., Schildkraut I., and Aggarwal A.K. Structure of BamHI endonuclease bound to DNA: partial folding and unfolding on DNA binding. Science 269 (1995) 656-663
-
(1995)
Science
, vol.269
, pp. 656-663
-
-
Newman, M.1
Strzelecka, T.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
14
-
-
0035937250
-
The energetics of the interaction of BamHI endonuclease with its recognition site GGATCC
-
Engler L.E., Sapienza P., Dorner L.F., Kucera R., Schildkraut I., and Jen-Jacobson L. The energetics of the interaction of BamHI endonuclease with its recognition site GGATCC. J. Mol. Biol. 307 (2001) 619-636
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 619-636
-
-
Engler, L.E.1
Sapienza, P.2
Dorner, L.F.3
Kucera, R.4
Schildkraut, I.5
Jen-Jacobson, L.6
-
15
-
-
17844400537
-
How restriction enzymes became the workhorses of molecular biology
-
Roberts R.J. How restriction enzymes became the workhorses of molecular biology. Proc. Natl. Acad. Sci. USA 102 (2005) 5905-5908
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5905-5908
-
-
Roberts, R.J.1
-
16
-
-
0034877122
-
Hopping, jumping and looping by restriction enzymes
-
Halford S.E. Hopping, jumping and looping by restriction enzymes. Biochem. Soc. Trans. 29 (2001) 363-373
-
(2001)
Biochem. Soc. Trans.
, vol.29
, pp. 363-373
-
-
Halford, S.E.1
-
17
-
-
0344011130
-
Diversity of Type II restriction endonucleases that require two DNA recognition sites
-
Mucke M., Kruger D.H., and Reuter M. Diversity of Type II restriction endonucleases that require two DNA recognition sites. Nucleic Acids Res. 31 (2003) 6079-6084
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6079-6084
-
-
Mucke, M.1
Kruger, D.H.2
Reuter, M.3
-
18
-
-
0037040271
-
Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA
-
Bath A.J., Milsom S.E., Gormley N.A., and Halford S.E. Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA. J. Biol. Chem. 277 (2002) 4024-4033
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 4024-4033
-
-
Bath, A.J.1
Milsom, S.E.2
Gormley, N.A.3
Halford, S.E.4
-
19
-
-
3042785825
-
One recognition sequence, seven restriction enzymes, five reaction mechanisms
-
Gowers D.M., Bellamy S.R.W., and Halford S.E. One recognition sequence, seven restriction enzymes, five reaction mechanisms. Nucleic Acids Res. 32 (2004) 3469-3479
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3469-3479
-
-
Gowers, D.M.1
Bellamy, S.R.W.2
Halford, S.E.3
-
20
-
-
33847162746
-
Restriction endonucleases that bridge and excise two recognition sites from DNA
-
Marshall J.M., Gowers D.M., and Halford S.E. Restriction endonucleases that bridge and excise two recognition sites from DNA. J. Mol. Biol. 387 (2007) 419-431
-
(2007)
J. Mol. Biol.
, vol.387
, pp. 419-431
-
-
Marshall, J.M.1
Gowers, D.M.2
Halford, S.E.3
-
21
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
Roberts R.J., Belfort M., Bestor T., Bhagwat A.S., Bickle T.A., Bitinaite J., et al. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res. 31 (2003) 1805-1812
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1805-1812
-
-
Roberts, R.J.1
Belfort, M.2
Bestor, T.3
Bhagwat, A.S.4
Bickle, T.A.5
Bitinaite, J.6
-
22
-
-
33646119884
-
Simultaneous binding of three recognition sites is necessary for a concerted plasmid DNA cleavage by EcoRII restriction endonuclease
-
Tamulaitis G., Sasnauskas G., Mucke M., and Siksnys V. Simultaneous binding of three recognition sites is necessary for a concerted plasmid DNA cleavage by EcoRII restriction endonuclease. J. Mol. Biol. 358 (2006) 406-419
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 406-419
-
-
Tamulaitis, G.1
Sasnauskas, G.2
Mucke, M.3
Siksnys, V.4
-
23
-
-
0035902832
-
DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites
-
Embleton M.L., Siksnys V., and Halford S.E. DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites. J. Mol. Biol. 311 (2001) 503-514
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 503-514
-
-
Embleton, M.L.1
Siksnys, V.2
Halford, S.E.3
-
24
-
-
0033818703
-
Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA
-
Deibert M., Grazulis S., Sasnauskas G., Siksnys V., and Huber R. Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA. Nat. Struct. Biol. 7 (2000) 792-799
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 792-799
-
-
Deibert, M.1
Grazulis, S.2
Sasnauskas, G.3
Siksnys, V.4
Huber, R.5
-
25
-
-
28644435380
-
A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA
-
Vanamee E.S., Viadiu H., Kucera R., Dorner L., Picone S., Schildkraut I., and Aggarwal A.K. A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA. EMBO J. 24 (2005) 4198-4208
-
(2005)
EMBO J.
, vol.24
, pp. 4198-4208
-
-
Vanamee, E.S.1
Viadiu, H.2
Kucera, R.3
Dorner, L.4
Picone, S.5
Schildkraut, I.6
Aggarwal, A.K.7
-
26
-
-
0028988946
-
The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence
-
Wentzell L.M., Nobbs T.J., and Halford S.E. The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence. J. Mol. Biol. 248 (1995) 581-595
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 581-595
-
-
Wentzell, L.M.1
Nobbs, T.J.2
Halford, S.E.3
-
27
-
-
0029091376
-
DNA cleavage at two recognition sites by the SfiI restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sites
-
Nobbs T.J., and Halford S.E. DNA cleavage at two recognition sites by the SfiI restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sites. J. Mol. Biol. 252 (1995) 399-411
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 399-411
-
-
Nobbs, T.J.1
Halford, S.E.2
-
28
-
-
0033520420
-
The Cfr10I restriction enzyme is functional as a tetramer
-
Siksnys V., Skirgaila R., Sasnauskas G., Urbanke C., Cherny D., Grazulis S., and Huber R. The Cfr10I restriction enzyme is functional as a tetramer. J. Mol. Biol. 291 (1999) 1105-1118
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 1105-1118
-
-
Siksnys, V.1
Skirgaila, R.2
Sasnauskas, G.3
Urbanke, C.4
Cherny, D.5
Grazulis, S.6
Huber, R.7
-
29
-
-
0037040190
-
The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence
-
Gormley N.A., Hillberg A.L., and Halford S.E. The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence. J. Biol. Chem. 277 (2002) 4034-4041
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 4034-4041
-
-
Gormley, N.A.1
Hillberg, A.L.2
Halford, S.E.3
-
30
-
-
20444368444
-
Long-range communications between DNA sites by the dimeric restriction endonuclease SgrAl
-
Wood K.M., Daniels L.E., and Halford S.E. Long-range communications between DNA sites by the dimeric restriction endonuclease SgrAl. J. Mol. Biol. 350 (2005) 240-253
-
(2005)
J. Mol. Biol.
, vol.350
, pp. 240-253
-
-
Wood, K.M.1
Daniels, L.E.2
Halford, S.E.3
-
31
-
-
0021760476
-
A type II restriction endonuclease with an eight nucleotide specificity from Streptomyces fimbriatus
-
Qiang B.-Q., and Schildkraut I. A type II restriction endonuclease with an eight nucleotide specificity from Streptomyces fimbriatus. Nucleic Acids Res. 12 (1984) 4507-4515
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 4507-4515
-
-
Qiang, B.-Q.1
Schildkraut, I.2
-
33
-
-
0029978713
-
Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease
-
Szczelkun M.D., and Halford S.E. Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease. EMBO J. 15 (1996) 1460-1469
-
(1996)
EMBO J.
, vol.15
, pp. 1460-1469
-
-
Szczelkun, M.D.1
Halford, S.E.2
-
34
-
-
0032555293
-
DNA looping by the SfiI restriction endonuclease
-
Wentzell L.M., and Halford S.E. DNA looping by the SfiI restriction endonuclease. J. Mol. Biol. 281 (1998) 433-444
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 433-444
-
-
Wentzell, L.M.1
Halford, S.E.2
-
35
-
-
0035902776
-
Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites
-
Milsom S.E., Halford S.E., Embleton M.L., and Szczelkun M.D. Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites. J. Mol. Biol. 311 (2001) 515-527
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 515-527
-
-
Milsom, S.E.1
Halford, S.E.2
Embleton, M.L.3
Szczelkun, M.D.4
-
36
-
-
0032983155
-
Specificity from the synapsis of DNA elements by the SfiI endonuclease
-
Embleton M.L., Williams S.A., Watson M.A., and Halford S.E. Specificity from the synapsis of DNA elements by the SfiI endonuclease. J. Mol. Biol. 289 (1999) 785-797
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 785-797
-
-
Embleton, M.L.1
Williams, S.A.2
Watson, M.A.3
Halford, S.E.4
-
37
-
-
0034607553
-
Alternative geometries of DNA looping: an analysis using the Sfi I endonuclease
-
Watson M.A., Gowers D.M., and Halford S.E. Alternative geometries of DNA looping: an analysis using the Sfi I endonuclease. J. Mol. Biol. 298 (2000) 461-475
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 461-475
-
-
Watson, M.A.1
Gowers, D.M.2
Halford, S.E.3
-
38
-
-
0036302286
-
Communications between catalytic sites in the protein-DNA synapse by the SfiI endonuclease
-
Williams S.A., and Halford S.E. Communications between catalytic sites in the protein-DNA synapse by the SfiI endonuclease. J. Mol. Biol. 318 (2002) 387-394
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 387-394
-
-
Williams, S.A.1
Halford, S.E.2
-
40
-
-
0037082418
-
Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequence
-
Grazulis S., Deibert M., Rimseliene R., Skirgaila R., Sasnauskas G., Lagunavicius A., et al. Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequence. Nucleic Acids Res. 30 (2002) 876-885
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 876-885
-
-
Grazulis, S.1
Deibert, M.2
Rimseliene, R.3
Skirgaila, R.4
Sasnauskas, G.5
Lagunavicius, A.6
-
41
-
-
16244422033
-
Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: oligomeric structure-stability-function correlations
-
Zaremba M., Sasnauskas G., Urbanke C., and Siksnys V. Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: oligomeric structure-stability-function correlations. J. Mol. Biol. 348 (2005) 459-478
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 459-478
-
-
Zaremba, M.1
Sasnauskas, G.2
Urbanke, C.3
Siksnys, V.4
-
42
-
-
33749579918
-
Allosteric communication network in the tetrameric restriction endonuclease Bse634I
-
Zaremba M., Sasnauskas G., Urbanke C., and Siksnys V. Allosteric communication network in the tetrameric restriction endonuclease Bse634I. J. Mol. Biol. 363 (2006) 800-812
-
(2006)
J. Mol. Biol.
, vol.363
, pp. 800-812
-
-
Zaremba, M.1
Sasnauskas, G.2
Urbanke, C.3
Siksnys, V.4
-
43
-
-
0033579567
-
Reactions of type II restriction endonucleases with 8-base pair recognition sites
-
Bilcock D.T., Daniels L.E., Bath A.J., and Halford S.E. Reactions of type II restriction endonucleases with 8-base pair recognition sites. J. Biol. Chem. 274 (1999) 36379-36386
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 36379-36386
-
-
Bilcock, D.T.1
Daniels, L.E.2
Bath, A.J.3
Halford, S.E.4
-
44
-
-
0037470637
-
Subunit assembly for DNA cleavage by restriction endonuclease SgrAI
-
Daniels L.E., Wood K.M., Scott D.J., and Halford S.E. Subunit assembly for DNA cleavage by restriction endonuclease SgrAI. J. Mol. Biol. 327 (2003) 579-591
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 579-591
-
-
Daniels, L.E.1
Wood, K.M.2
Scott, D.J.3
Halford, S.E.4
-
45
-
-
33645275997
-
Loops in DNA: an overview of experimental and theoretical approaches
-
Allemand J.F., Cocco S., Douarche N., and Lia G. Loops in DNA: an overview of experimental and theoretical approaches. Eur. Phys. J. E 19 (2006) 293-302
-
(2006)
Eur. Phys. J. E
, vol.19
, pp. 293-302
-
-
Allemand, J.F.1
Cocco, S.2
Douarche, N.3
Lia, G.4
-
46
-
-
0032530311
-
Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence
-
Newman M., Lunnen K., Wilson G., Greci J., Schildkraut I., and Phillips S.E.V. Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence. EMBO J. 17 (1998) 5466-5476
-
(1998)
EMBO J.
, vol.17
, pp. 5466-5476
-
-
Newman, M.1
Lunnen, K.2
Wilson, G.3
Greci, J.4
Schildkraut, I.5
Phillips, S.E.V.6
-
47
-
-
21544433515
-
A homology model of restriction endonuclease SfiI in complex with DNA
-
Chmiel A.A., Bujnicki J.M., and Skowronek K.J. A homology model of restriction endonuclease SfiI in complex with DNA. BMC Struct. Biol. 5 (2005) 2
-
(2005)
BMC Struct. Biol.
, vol.5
, pp. 2
-
-
Chmiel, A.A.1
Bujnicki, J.M.2
Skowronek, K.J.3
-
48
-
-
0026319199
-
Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A., Sharp K.A., and Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins: Struct. Funct. Genet. 11 (1991) 281-296
-
(1991)
Proteins: Struct. Funct. Genet.
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
49
-
-
0003836410
-
-
Beckman Instruments, Inc., Palo Alta, CA
-
McRorie D.K., and Voelker P.J. Self-associating Systems in the Analytical Ultrcentrifuge (1993), Beckman Instruments, Inc., Palo Alta, CA
-
(1993)
Self-associating Systems in the Analytical Ultrcentrifuge
-
-
McRorie, D.K.1
Voelker, P.J.2
-
51
-
-
78651189765
-
On the nature of allosteric transitions: a plausible model
-
Monod J., Wyman J., and Changeux J.P. On the nature of allosteric transitions: a plausible model. J. Mol Biol. 12 (1965) 88-118
-
(1965)
J. Mol Biol.
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.P.3
-
52
-
-
0013863816
-
Comparison of experimental binding data and theoretical models in proteins containing subunits
-
Koshland Jr. D.E., Nemethy G., and Filmer D. Comparison of experimental binding data and theoretical models in proteins containing subunits. Biochemistry 5 (1966) 365-385
-
(1966)
Biochemistry
, vol.5
, pp. 365-385
-
-
Koshland Jr., D.E.1
Nemethy, G.2
Filmer, D.3
-
53
-
-
23844514076
-
Structure of a synaptic γδ resolvase tetramer covalently linked to two cleaved DNAs
-
Li W., Kamtekar S., Xiong Y., Sarkis G.J., Grindley N.D.F., and Steitz T.A. Structure of a synaptic γδ resolvase tetramer covalently linked to two cleaved DNAs. Science 309 (2005) 1210-1215
-
(2005)
Science
, vol.309
, pp. 1210-1215
-
-
Li, W.1
Kamtekar, S.2
Xiong, Y.3
Sarkis, G.J.4
Grindley, N.D.F.5
Steitz, T.A.6
|