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Volumn 10, Issue 6, 2010, Pages 935-941

Exploiting formalin-preserved fish specimens for resources of DNA barcoding

Author keywords

DNA barcoding; DNA extraction; Formalin fixed specimens; Semi nested PCR

Indexed keywords


EID: 78650453296     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2010.2838.x     Document Type: Article
Times cited : (20)

References (27)
  • 1
    • 49749090737 scopus 로고    scopus 로고
    • Protocol: a high-throughput DNA extraction system suitable for conifers
    • Bashalkhanov S, Rajora OP (2008) Protocol: a high-throughput DNA extraction system suitable for conifers. Plant Methods, 4, 20.
    • (2008) Plant Methods , vol.4 , pp. 20
    • Bashalkhanov, S.1    Rajora, O.P.2
  • 3
    • 33745955199 scopus 로고    scopus 로고
    • Museum fish specimens and molecular taxonomy: a comparative study on DNA extraction protocols and preservation techniques
    • Chakraborty A, Sakai M, Iwatsuki Y (2006) Museum fish specimens and molecular taxonomy: a comparative study on DNA extraction protocols and preservation techniques. Journal of Applied Ichthyology, 22, 160-166.
    • (2006) Journal of Applied Ichthyology , vol.22 , pp. 160-166
    • Chakraborty, A.1    Sakai, M.2    Iwatsuki, Y.3
  • 4
    • 17944390807 scopus 로고    scopus 로고
    • Optimisation of DNA and RNA extraction from archival formalin fixed tissue
    • Coombs NJ, Gough AC, Primrose JN (1999) Optimisation of DNA and RNA extraction from archival formalin fixed tissue. Nucleic Acids Research, 27, e12.
    • (1999) Nucleic Acids Research , vol.27
    • Coombs, N.J.1    Gough, A.C.2    Primrose, J.N.3
  • 6
    • 77951631386 scopus 로고    scopus 로고
    • The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when?
    • Gilbert MT, Haselkorn T, Bunce M et al. (2007) The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when? PLoS ONE, 2, e537.
    • (2007) PLoS ONE , vol.2
    • Gilbert, M.T.1    Haselkorn, T.2    Bunce, M.3
  • 7
    • 33745631201 scopus 로고    scopus 로고
    • Genotyping of single Cryptosporidium oocysts in sewage by semi-nested PCR and direct sequencing
    • Hashimoto A, Sugimoto H, Morita S, Hirata T (2006) Genotyping of single Cryptosporidium oocysts in sewage by semi-nested PCR and direct sequencing. Water Research, 40, 2527-2532.
    • (2006) Water Research , vol.40 , pp. 2527-2532
    • Hashimoto, A.1    Sugimoto, H.2    Morita, S.3    Hirata, T.4
  • 9
    • 33847342073 scopus 로고    scopus 로고
    • A fast and inexpensive DNA extraction/purification protocol for brown macroalgae
    • Hoarau G, Coyer JA, Stam WT, Olsen JL (2006) A fast and inexpensive DNA extraction/purification protocol for brown macroalgae. Molecular Ecology notes, 7, 191-193.
    • (2006) Molecular Ecology notes , vol.7 , pp. 191-193
    • Hoarau, G.1    Coyer, J.A.2    Stam, W.T.3    Olsen, J.L.4
  • 10
    • 33751313616 scopus 로고    scopus 로고
    • An inexpensive, automation-friendly protocol for recovering high-quality DNA
    • Ivanova NV, DeWaard J, Hebert PDN (2006) An inexpensive, automation-friendly protocol for recovering high-quality DNA. Molecular Ecology Notes, 6, 998-1002.
    • (2006) Molecular Ecology Notes , vol.6 , pp. 998-1002
    • Ivanova, N.V.1    DeWaard, J.2    Hebert, P.D.N.3
  • 11
    • 0018040673 scopus 로고
    • Studies on histone organization in the nucleosome using formaldehyde as a reversible cross-linking agent
    • Jackson V (1978) Studies on histone organization in the nucleosome using formaldehyde as a reversible cross-linking agent. Cell, 15, 945-954.
    • (1978) Cell , vol.15 , pp. 945-954
    • Jackson, V.1
  • 12
    • 55549091037 scopus 로고    scopus 로고
    • Analysis of several methods for the extraction of high quality DNA from acetic acid bacteria in wine and vinegar for characterization by PCR-based methods
    • Jara C, Mateo E, Guillamón JM, Torija MJ, Mas A (2008) Analysis of several methods for the extraction of high quality DNA from acetic acid bacteria in wine and vinegar for characterization by PCR-based methods. International Journal of Food Microbiology, 128, 336-341.
    • (2008) International Journal of Food Microbiology , vol.128 , pp. 336-341
    • Jara, C.1    Mateo, E.2    Guillamón, J.M.3    Torija, M.J.4    Mas, A.5
  • 15
    • 19744383885 scopus 로고    scopus 로고
    • Taxonomy. Will DNA bar codes breathe life into claasification?
    • Marshall E (2005) Taxonomy. Will DNA bar codes breathe life into claasification? Science, 371, 1037.
    • (2005) Science , vol.371 , pp. 1037
    • Marshall, E.1
  • 17
    • 34248549305 scopus 로고    scopus 로고
    • Comparison and optimization of ancient DNA extraction
    • Rohland N, Hofreiter M (2007) Comparison and optimization of ancient DNA extraction. BioTechniques, 42, 343-352.
    • (2007) BioTechniques , vol.42 , pp. 343-352
    • Rohland, N.1    Hofreiter, M.2
  • 18
    • 49749125216 scopus 로고    scopus 로고
    • Extraction of genomic DNA from paraffin-embedded tissue sections of human fetuses fixed and stored in formalin for long periods
    • Santos MCLG, Saito-Cristiane PB, Line-Sergio RP (2008) Extraction of genomic DNA from paraffin-embedded tissue sections of human fetuses fixed and stored in formalin for long periods. Pathology research and practice, 204, 633-636.
    • (2008) Pathology research and practice , vol.204 , pp. 633-636
    • Santos, M.C.L.G.1    Saito-Cristiane, P.B.2    Line-Sergio, R.P.3
  • 19
    • 0141676438 scopus 로고    scopus 로고
    • DNA, PCR and formalinized animal tissue-A short review and protocols
    • Schander C, Halanych KM (2003) DNA, PCR and formalinized animal tissue-A short review and protocols. Organisms Diversity Evolution, 3, 195-205.
    • (2003) Organisms Diversity Evolution , vol.3 , pp. 195-205
    • Schander, C.1    Halanych, K.M.2
  • 20
    • 0036321629 scopus 로고    scopus 로고
    • DNA Extraction from Archival Formalin-fixed, Paraffin-embedded Tissue Sections Based on the Antigen Retrieval Principle: heating Under the Influence of PH
    • Shi SR, Cote RJ, Wu L et al. (2002) DNA Extraction from Archival Formalin-fixed, Paraffin-embedded Tissue Sections Based on the Antigen Retrieval Principle: heating Under the Influence of PH. The Journal of Histochemistry & Cytochemistry, 50, 1005-1011.
    • (2002) The Journal of Histochemistry & Cytochemistry , vol.50 , pp. 1005-1011
    • Shi, S.R.1    Cote, R.J.2    Wu, L.3
  • 21
    • 5644228885 scopus 로고    scopus 로고
    • DNA extraction from archival formalin-fixed, paraffin-embedded tissues: heat-induced retrieval in alkaline solution
    • Shi SR, Datar R, Liu C et al. (2004) DNA extraction from archival formalin-fixed, paraffin-embedded tissues: heat-induced retrieval in alkaline solution. Histochemistry and Cell Biology, 122, 211-218.
    • (2004) Histochemistry and Cell Biology , vol.122 , pp. 211-218
    • Shi, S.R.1    Datar, R.2    Liu, C.3
  • 22
    • 33644944519 scopus 로고    scopus 로고
    • A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities
    • Sichler MO, Gomes NCM, Neuber G, Smalla K (2006) A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities. Journal of Microbiological Methods, 65, 63-75.
    • (2006) Journal of Microbiological Methods , vol.65 , pp. 63-75
    • Sichler, M.O.1    Gomes, N.C.M.2    Neuber, G.3    Smalla, K.4
  • 23
    • 78650444023 scopus 로고    scopus 로고
    • Path to effective recovering of DNA from formalin-fixed biological samples in natural history collections, Workshop Summary, National Research Council of the National Academies
    • Tang EPY, ed National Academies Press, Washington, D.C.
    • Tang EPY, ed (2006) Path to effective recovering of DNA from formalin-fixed biological samples in natural history collections, Workshop Summary, National Research Council of the National Academies. National Academies Press, Washington, D.C.
    • (2006)
  • 24
    • 69649105772 scopus 로고    scopus 로고
    • Evaluation of DNA extraction procedures for traceability of various tomato products
    • Turci M, Sardaro MLS, Visioli G, Maestri E, Marmiroli M (2010) Evaluation of DNA extraction procedures for traceability of various tomato products. Food Control, 21, 143-149.
    • (2010) Food Control , vol.21 , pp. 143-149
    • Turci, M.1    Sardaro, M.L.S.2    Visioli, G.3    Maestri, E.4    Marmiroli, M.5
  • 26
    • 0032755991 scopus 로고    scopus 로고
    • A high frequency of sequence alterations is due to formalin fixation of archival specimens
    • Williams C, Pontén F, Moberg C et al. (1999) A high frequency of sequence alterations is due to formalin fixation of archival specimens. American Society for Investigative Pathology, 155, 1467-1471.
    • (1999) American Society for Investigative Pathology , vol.155 , pp. 1467-1471
    • Williams, C.1    Pontén, F.2    Moberg, C.3
  • 27
    • 0031260296 scopus 로고    scopus 로고
    • An evaluation of introgression of Atlantic coast striped bass mitochondrial DNA in a Gulf of Mexico population using formalin-preserved museum collections
    • Wirgin I, Maceda L, Stabile J, Mesing C (1997) An evaluation of introgression of Atlantic coast striped bass mitochondrial DNA in a Gulf of Mexico population using formalin-preserved museum collections. Molecular Ecology, 6, 907-916.
    • (1997) Molecular Ecology , vol.6 , pp. 907-916
    • Wirgin, I.1    Maceda, L.2    Stabile, J.3    Mesing, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.