메뉴 건너뛰기




Volumn 409, Issue 2, 2011, Pages 163-174

Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120

Author keywords

Envelope; Genetic variation; HIV 1; Neutralization; Signature

Indexed keywords

GLYCOPROTEIN GP 120; NEUTRALIZING ANTIBODY; VIRUS ENVELOPE PROTEIN;

EID: 78650280214     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2010.09.031     Document Type: Article
Times cited : (18)

References (63)
  • 4
  • 6
    • 33645062958 scopus 로고    scopus 로고
    • Neutralization and infectivity characteristics of envelope glycoproteins from human immunodeficiency virus type 1 infected donors whose sera exhibit broadly cross-reactive neutralizing activity
    • Cham F., Zhang P.F., Heyndrickx L., Bouma P., Zhong P., Katinger H., Robinson J., van der Groen G., Quinnan G.V. Neutralization and infectivity characteristics of envelope glycoproteins from human immunodeficiency virus type 1 infected donors whose sera exhibit broadly cross-reactive neutralizing activity. Virology 2006, 347:36-51.
    • (2006) Virology , vol.347 , pp. 36-51
    • Cham, F.1    Zhang, P.F.2    Heyndrickx, L.3    Bouma, P.4    Zhong, P.5    Katinger, H.6    Robinson, J.7    van der Groen, G.8    Quinnan, G.V.9
  • 7
    • 0036091692 scopus 로고    scopus 로고
    • Envelope glycoprotein incorporation, not shedding of surface envelope glycoprotein (gp120/SU), is the primary determinant of SU content of purified human immunodeficiency virus type 1 and simian immunodeficiency virus
    • Chertova E., Bess J.W., Crise B.J., Sowder I.R., Schaden T.M., Hilburn J.M., Hoxie J.A., Benveniste R.E., Lifson J.D., Henderson L.E., Arthur L.O. Envelope glycoprotein incorporation, not shedding of surface envelope glycoprotein (gp120/SU), is the primary determinant of SU content of purified human immunodeficiency virus type 1 and simian immunodeficiency virus. J Virol 2002, 76:5315-5325.
    • (2002) J Virol , vol.76 , pp. 5315-5325
    • Chertova, E.1    Bess, J.W.2    Crise, B.J.3    Sowder, I.R.4    Schaden, T.M.5    Hilburn, J.M.6    Hoxie, J.A.7    Benveniste, R.E.8    Lifson, J.D.9    Henderson, L.E.10    Arthur, L.O.11
  • 8
    • 0024397095 scopus 로고
    • Single amino-acid changes in HIV envelope affect viral tropism and receptor binding
    • Cordonnier A., Montagnier L., Emerman M. Single amino-acid changes in HIV envelope affect viral tropism and receptor binding. Nature 1989, 340:571-574.
    • (1989) Nature , vol.340 , pp. 571-574
    • Cordonnier, A.1    Montagnier, L.2    Emerman, M.3
  • 10
    • 2342463654 scopus 로고    scopus 로고
    • Prospects for an AIDS vaccine
    • Desrosiers R.C. Prospects for an AIDS vaccine. Nat. Med. 2004, 10:221-223.
    • (2004) Nat. Med. , vol.10 , pp. 221-223
    • Desrosiers, R.C.1
  • 12
    • 77951939875 scopus 로고    scopus 로고
    • Structure of a clade C HIV-1 gp120 bound to CD4 and CD4-induced antibody reveals anti-CD4 polyreactivity
    • Diskin R., Marcovecchio P.M., Bjorkman P.J. Structure of a clade C HIV-1 gp120 bound to CD4 and CD4-induced antibody reveals anti-CD4 polyreactivity. Nat. Struct. Mol. Biol. 2010, 17:608-613.
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 608-613
    • Diskin, R.1    Marcovecchio, P.M.2    Bjorkman, P.J.3
  • 15
    • 34247595321 scopus 로고    scopus 로고
    • Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120
    • Gnanakaran S., Lang D., Daniels M., Bhattacharya T., Derdeyn C.A., Korber B. Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120. J. Virol. 2007, 81:4886-4891.
    • (2007) J. Virol. , vol.81 , pp. 4886-4891
    • Gnanakaran, S.1    Lang, D.2    Daniels, M.3    Bhattacharya, T.4    Derdeyn, C.A.5    Korber, B.6
  • 17
    • 33746763724 scopus 로고    scopus 로고
    • Aiming to induce broadly reactive neutralizing antibody responses with HIV-1 vaccine candidates
    • Haynes B.F., Montefiori D.C. Aiming to induce broadly reactive neutralizing antibody responses with HIV-1 vaccine candidates. Expert Rev. Vaccin. 2006, 5:347-363.
    • (2006) Expert Rev. Vaccin. , vol.5 , pp. 347-363
    • Haynes, B.F.1    Montefiori, D.C.2
  • 18
    • 33750253231 scopus 로고    scopus 로고
    • Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004
    • Hemelaar J., Gouws E., Ghys P.D., Osmanov S. Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004. AIDS 2006, 20:W13-W23.
    • (2006) AIDS , vol.20
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 20
    • 43949118440 scopus 로고    scopus 로고
    • Coreceptor tropism can be influenced by amino acid substitutions in the gp41 transmembrane subunit of human immunodeficiency virus type 1 envelope protein
    • Huang W., Toma J., Fransen S., Stawiski E., Reeves J.D., Whitcomb J.M., Parkin N., Petropoulos C.J. Coreceptor tropism can be influenced by amino acid substitutions in the gp41 transmembrane subunit of human immunodeficiency virus type 1 envelope protein. J. Virol. 2008, 82:5584-5593.
    • (2008) J. Virol. , vol.82 , pp. 5584-5593
    • Huang, W.1    Toma, J.2    Fransen, S.3    Stawiski, E.4    Reeves, J.D.5    Whitcomb, J.M.6    Parkin, N.7    Petropoulos, C.J.8
  • 21
    • 0029878720 scopus 로고    scopus 로고
    • VMD: visual molecular dynamics
    • Humphrey W., Dalke A., Schulten K. VMD: visual molecular dynamics. J. Mol. Graph. 1996, 14(33-38):27-38.
    • (1996) J. Mol. Graph. , vol.14 , Issue.33-38 , pp. 27-38
    • Humphrey, W.1    Dalke, A.2    Schulten, K.3
  • 22
    • 48349109797 scopus 로고    scopus 로고
    • Comparison of HPLC/ESI-FTICR MS versus MALDI-TOF/TOF MS for glycopeptide analysis of a highly glycosylated HIV envelope glycoprotein
    • Irungu J., Go E.P., Zhang Y., Dalpathado D.S., Liao H.X., Haynes B.F., Desaire H. Comparison of HPLC/ESI-FTICR MS versus MALDI-TOF/TOF MS for glycopeptide analysis of a highly glycosylated HIV envelope glycoprotein. J. Am. Soc. Mass Spectrom. 2008, 19:1209-1220.
    • (2008) J. Am. Soc. Mass Spectrom. , vol.19 , pp. 1209-1220
    • Irungu, J.1    Go, E.P.2    Zhang, Y.3    Dalpathado, D.S.4    Liao, H.X.5    Haynes, B.F.6    Desaire, H.7
  • 23
    • 13444291135 scopus 로고    scopus 로고
    • Antibody neutralization escape mediated by point mutations in the intracytoplasmic tail of human immunodeficiency virus type 1 gp41
    • Kalia V., Sarkar S., Gupta P., Montelaro R.C. Antibody neutralization escape mediated by point mutations in the intracytoplasmic tail of human immunodeficiency virus type 1 gp41. J. Virol. 2005, 79:2097-2107.
    • (2005) J. Virol. , vol.79 , pp. 2097-2107
    • Kalia, V.1    Sarkar, S.2    Gupta, P.3    Montelaro, R.C.4
  • 25
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 27
    • 69549095803 scopus 로고    scopus 로고
    • The implications of patterns in HIV diversity for neutralizing antibody induction and susceptibility
    • Korber B., Gnanakaran S. The implications of patterns in HIV diversity for neutralizing antibody induction and susceptibility. Curr. Opin. HIV AIDS 2009, 4:408-417.
    • (2009) Curr. Opin. HIV AIDS , vol.4 , pp. 408-417
    • Korber, B.1    Gnanakaran, S.2
  • 28
    • 69249211230 scopus 로고    scopus 로고
    • T-cell vaccine strategies for human immunodeficiency virus, the virus with a thousand faces
    • Korber B.T., Letvin N.L., Haynes B.F. T-cell vaccine strategies for human immunodeficiency virus, the virus with a thousand faces. J. Virol. 2009, 83:8300-8314.
    • (2009) J. Virol. , vol.83 , pp. 8300-8314
    • Korber, B.T.1    Letvin, N.L.2    Haynes, B.F.3
  • 30
    • 0029127787 scopus 로고
    • A single amino acid change in the cytoplasmic domain of the simian immunodeficiency virus transmembrane molecule increases envelope glycoprotein expression on infected cells
    • LaBranche C.C., Sauter M.M., Haggarty B.S., Vance P.J., Romano J., Hart T.K., Bugelski P.J., Marsh M., Hoxie J.A. A single amino acid change in the cytoplasmic domain of the simian immunodeficiency virus transmembrane molecule increases envelope glycoprotein expression on infected cells. J. Virol. 1995, 69:5217-5227.
    • (1995) J. Virol. , vol.69 , pp. 5217-5227
    • LaBranche, C.C.1    Sauter, M.M.2    Haggarty, B.S.3    Vance, P.J.4    Romano, J.5    Hart, T.K.6    Bugelski, P.J.7    Marsh, M.8    Hoxie, J.A.9
  • 34
    • 38949122430 scopus 로고    scopus 로고
    • Designing immunogens to elicit broadly neutralizing antibodies to the HIV-1 envelope glycoprotein
    • Lin G., Nara P.L. Designing immunogens to elicit broadly neutralizing antibodies to the HIV-1 envelope glycoprotein. Curr. HIV Res. 2007, 5:514-541.
    • (2007) Curr. HIV Res. , vol.5 , pp. 514-541
    • Lin, G.1    Nara, P.L.2
  • 36
    • 0028073184 scopus 로고
    • Exploration of antigenic variation in gp120 from clades A through F of human immunodeficiency virus type 1 by using monoclonal antibodies
    • Moore J.P., McCutchan F.E., Poon S.W., Mascola J., Liu J., Cao Y., Ho D.D. Exploration of antigenic variation in gp120 from clades A through F of human immunodeficiency virus type 1 by using monoclonal antibodies. J. Virol. 1994, 68:8350-8364.
    • (1994) J. Virol. , vol.68 , pp. 8350-8364
    • Moore, J.P.1    McCutchan, F.E.2    Poon, S.W.3    Mascola, J.4    Liu, J.5    Cao, Y.6    Ho, D.D.7
  • 37
    • 38849090714 scopus 로고    scopus 로고
    • The c3-v4 region is a major target of autologous neutralizing antibodies in human immunodeficiency virus type 1 subtype C infection
    • Moore P.L., Gray E.S., Choge I.A., Ranchobe N., Mlisana K., Abdool Karim S.S., Williamson C., Morris L. The c3-v4 region is a major target of autologous neutralizing antibodies in human immunodeficiency virus type 1 subtype C infection. J. Virol. 2008, 82:1860-1869.
    • (2008) J. Virol. , vol.82 , pp. 1860-1869
    • Moore, P.L.1    Gray, E.S.2    Choge, I.A.3    Ranchobe, N.4    Mlisana, K.5    Abdool Karim, S.S.6    Williamson, C.7    Morris, L.8
  • 39
    • 0027940559 scopus 로고
    • Effect of a single amino acid substitution in the V3 domain of the human immunodeficiency virus type 1: generation of revertant viruses to overcome defects in infectivity in specific cell types
    • Morris J.F., Sternberg E.J., Gutshall L., Petteway S.R., Ivanoff L.A. Effect of a single amino acid substitution in the V3 domain of the human immunodeficiency virus type 1: generation of revertant viruses to overcome defects in infectivity in specific cell types. J. Virol. 1994, 68:8380-8385.
    • (1994) J. Virol. , vol.68 , pp. 8380-8385
    • Morris, J.F.1    Sternberg, E.J.2    Gutshall, L.3    Petteway, S.R.4    Ivanoff, L.A.5
  • 45
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 49
    • 0033526829 scopus 로고    scopus 로고
    • Changes in and discrepancies between cell tropisms and coreceptor uses of human immunodeficiency virus type 1 induced by single point mutations at the V3 tip of the env protein
    • Shimizu N., Haraguchi Y., Takeuchi Y., Soda Y., Kanbe K., Hoshino H. Changes in and discrepancies between cell tropisms and coreceptor uses of human immunodeficiency virus type 1 induced by single point mutations at the V3 tip of the env protein. Virology 1999, 259:324-333.
    • (1999) Virology , vol.259 , pp. 324-333
    • Shimizu, N.1    Haraguchi, Y.2    Takeuchi, Y.3    Soda, Y.4    Kanbe, K.5    Hoshino, H.6
  • 50
    • 21644440363 scopus 로고    scopus 로고
    • Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling
    • Shimodaira H. Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling. Ann. Stat. 2004, 32:2616-2641.
    • (2004) Ann. Stat. , vol.32 , pp. 2616-2641
    • Shimodaira, H.1
  • 51
    • 0028148476 scopus 로고
    • A naturally occurring single basic amino acid substitution in the V3 region of the human immunodeficiency virus type 1 env protein alters the cellular host range and antigenic structure of the virus
    • Shioda T., Oka S., Ida S., Nokihara K., Toriyoshi H., Mori S., Takebe Y., Kimura S., Shimada K., Nagai Y., et al. A naturally occurring single basic amino acid substitution in the V3 region of the human immunodeficiency virus type 1 env protein alters the cellular host range and antigenic structure of the virus. J. Virol. 1994, 68:7689-7696.
    • (1994) J. Virol. , vol.68 , pp. 7689-7696
    • Shioda, T.1    Oka, S.2    Ida, S.3    Nokihara, K.4    Toriyoshi, H.5    Mori, S.6    Takebe, Y.7    Kimura, S.8    Shimada, K.9    Nagai, Y.10
  • 52
    • 69149083668 scopus 로고    scopus 로고
    • Neutralizing antibodies generated during natural HIV-1 infection: good news for an HIV-1 vaccine?
    • Stamatatos L., Morris L., Burton D.R., Mascola J.R. Neutralizing antibodies generated during natural HIV-1 infection: good news for an HIV-1 vaccine?. Nat. Med. 2009, 15:866-870.
    • (2009) Nat. Med. , vol.15 , pp. 866-870
    • Stamatatos, L.1    Morris, L.2    Burton, D.R.3    Mascola, J.R.4
  • 53
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey J.D., Tibshirani R. Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA 2003, 100:9440-9445.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 54
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 55
    • 0028865465 scopus 로고
    • Cross-clade neutralization of primary isolates of human immunodeficiency virus type 1 by human monoclonal antibodies and tetrameric CD4-IgG
    • Trkola A., Pomales A.B., Yuan H., Korber B., Maddon P.J., Allaway G.P., Katinger H., Barbas C.F., Burton D.R., Ho D.D., et al. Cross-clade neutralization of primary isolates of human immunodeficiency virus type 1 by human monoclonal antibodies and tetrameric CD4-IgG. J. Virol. 1995, 69:6609-6617.
    • (1995) J. Virol. , vol.69 , pp. 6609-6617
    • Trkola, A.1    Pomales, A.B.2    Yuan, H.3    Korber, B.4    Maddon, P.J.5    Allaway, G.P.6    Katinger, H.7    Barbas, C.F.8    Burton, D.R.9    Ho, D.D.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.