Directed evolution of a mesophilic fungal xylanase by fusion of a thermophilic bacterial carbohydrate-binding module

Process Biochemistry

Volumn 46, Issue 1, 2011, Pages 395-398

  Liu, Liangwei ^a   Cheng, Jie ^a   Chen, Hongge ^a   Li, Xiangqian ^b   Wang, Suya ^c   Song, Andong ^a   Wang, Mingdao ^a   Wang, Bao ^a   Shen, Jinwen ^a  

^a HENAN AGRICULTURAL UNIVERSITY   (China)

^b School of Life Science   (China)

^c NANJING UNIVERSITY   (China)

Author keywords

Catalytic efficiency; CBM9; Domain fusion; GH11 xylanase; Thermo activity

Indexed keywords

CATALYTIC EFFICIENCIES; CBM9; DOMAIN FUSION; THERMO-ACTIVITY; XYLANASES;

BACTERIOLOGY; CARBOHYDRATES;

CATALYST ACTIVITY;

BACTERIA (MICROORGANISMS); FUNGI; THERMOTOGA MARITIMA; TRITICUM AESTIVUM SUBSP. SPELTA;

EID: 78650240316     PISSN: 13595113     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.procbio.2010.07.026     Document Type: Article

References (32)

1. M.F. Perutz, and H. Raidt Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2 Nature 255 1975 256 259
2. W. Li, X. Zhou, and P. Lu Structural features of thermozymes Biotechnol Adv 23 2005 271 281
3. S. Melchionna, R. Sinibaldi, and G. Briganti Explanation of the stability of thermophilic proteins based on unique micromorphology Biophys J 90 2006 4204 4212
4. A. Mozo-Villiarías, and E. Querol Theoretical analysis and computational predictions of protein thermostability Curr Bioinform 1 2006 25 32
5. G. Zhang, and W. Li Related dipeptide and characteristic dipeptide of optimal pH in α-amylase Biochem Biophys Res Commun 299 2002 647 651
6. L. Liu, M. Wang, W. Shao, and W. Li A novel model to calculate dipeptides responsible for optimum temperature in F/10 xylanase Process Biochem 40 2005 1389 1394
7. L. Liu, H. Dong, S. Wang, H. Chen, and W. Shao Computational analysis of di-peptides correlated with the optimal temperature in G/11 xylanase Process Biochem 41 2006 305 311
8. A. Boraston, D. Bolam, H. Gilbert, and G. Davies Carbohydrate-binding modules: fine-tuning polysaccharide recognition Biochem J 382 2004 769 781
9. B.L. Cantarel, P.M. Coutinho, C. Rancurel, T. Bernard, V. Lombard, and Henrissat B The carbohydrate-active enzymes database (CAZy): an expert resource for glycogenomics Nucleic Acids Res 37 2008 D233 238
10. R. Weiner, L. Taylor 2nd, B. Henrissat, L. Hauser, M. Land, and P. Coutinho Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40T PLoS Genet 4 2008 e1000087
11. S.L. Mangala, F.S. Kittur, M. Nishimoto, K. Sakka, K. Ohmiya, and M. Kitaoka Fusion of family VI cellulose binding domains to Bacillus halodurans xylanase increases its catalytic activity and substrate-binding capacity to insoluble xylan J Mol Catal B-Enzym 21 2003 221 230
12. G. Zhao, E. Ali, R. Araki, M. Sakka, T. Kimura, and K. Sakka Function of the family-9 and family-22 carbohydrate-binding modules in a modular beta-1,3-1,4-glucanase/xylanase derived from Clostridium stercorarium Xyn10B Biosci Biotechnol Biochem 69 2005 1562 1567
13. E. Shin, M. Yang, K. Jung, E. Kwon, J. Jung, and S. Park Influence of the transposition of the thermostabilizing domain of Clostridium thermocellum xylanase (xynx) on xylan binding and thermostabilization Appl Environ Microbiol 68 2002 3496 3501
14. G. Mamo, R. Hatti-Kaul, and B. Mattiasson Fusion of carbohydrate binding modules from Thermotoga neapolitana with a family 10 xylanase from Bacillus halodurans S7 Extremophiles 11 2007 169 177
15. H. Chen, X. Yan, X. Liu, M. Wang, H. Huang, and X. Jia Purification and characterization of a novel bifunctional xylanase, xyniii, isolated from Aspergillus niger A-25 J Microbiol Biotechnol 16 2006 1132 1138
16. J. Kleine, and W. Liebl Comparative characterization of deletion derivatives of the modular xylanase XynA of Thermotoga maritima Extremophiles 10 2006 373 381
17. A.B. Boraston, A.L. Creagh, M.M. Alam, J.M. Kormos, and P. Tomme Binding specificity and thermodynamics of a family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A Biochemistry 40 2001 6240 6247
18. E. Kaufmann, N. Geisler, and K. Weber SDS-PAGE strongly overestimates the molecular masses of the neurofilament proteins FEBS Lett 170 1984 81 84
19. S. Millward-Sadler, K. Davidson, G. Hazlewood, G. Black, H. Gilbert, and J. Clarke Novel cellulose-binding domains, NodB homologues and conserved modular architecture in xylanases from the aerobic soil bacteria Pseudomonas fluorescens subsp. cellulosa and Cellvibrio mixtus Biochem J 312 1995 39 48
20. D. Wassenberg, H. Schurig, W. Liebl, and R. Jaenicke Xylanase XynA from the hyperthermophilic bacterium Thermotoga maritima: structure and stability of the recombinant enzyme and its isolated cellulose-binding domain Protein Sci 6 1997 1718 1726
21. P. Beguin Molecular biology of cellulose degradation Ann Rev Microbiol 44 1990 219 248
22. N. Gilkes, B. Henrissat, D. Kilburnd, R. Millerr, and R. Warren Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families Microbiol Mol Biol Rev 55 1991 303 315
23. J. Zhang, and H. Flint A bifunctional xylanase encoded by the xynA gene of the rumen cellulolytic bacterium Ruminococcus flavefaciens 17 comprises two dissimilar domains linked by an asparagine/glutamine-rich sequence Mol Microbiol 6 1992 1013 1023
24. K. Meissner, D. Wassenberg, and W. Liebl The thermostabilizing domain of the modular xylanase XynA of Thermotoga maritima represents a novel type of binding domain with affinity for soluble xylan and mixed-linkage beta-1,3/beta-1,4-glucan Mol Microbiol 36 2000 898 912
25. A. Torronen, and J. Rouvinen Structural comparison of two major endo-1,4-xylanases from Trichoderma reesei Biochemistry 34 1995 847 856
26. G. Haris, J. Jenkins, I. Connerton, and R. Pickersgill Refined crystal structure of the catalytic domain of xylanase A from Pseudomonas fluorescens at 1.8- resolution Acta Crystallogr D 52 1996 393 401
27. P. Biely, M. Vrsanska, M. Tenkanen, and D. Kluepfel Endo-beta-xylanases families: differences in catalytic properties J Biotechnol 57 1997 151 166
28. M. Vardakou, C. Dumon, J. Murray, P. Christakopoulos, D. Weiner, and N. Juge Understanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases J Mol Biol 375 2008 1293 1305
29. P. Lu, and M. Feng Bifunctional enhancement of a beta-glucanase-xylanase fusion enzyme by optimization of peptide linkers Appl Microbiol Biotechnol 79 2008 579 587
30. D. Wassenberg, H. Schurig, W. Liebl, and R. Jaenicke Xylanase XynA from the hyperthermophilic bacterium Thermotoga maritima: structure and stability of the recombinant enzyme and its isolated cellulose-binding domain Protein Sci. 6 1997 1718 1726
31. V. Notenboom, A. Boraston, D. Kilburn, and D. Rose Crystal structures of the family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A in native and ligand-bound forms Biochemistry 40 2001 6248 6256
32. L. Liu, J. Cheng, and H. Chen Xylanase carbohydrate binding module: recent developments Chin J Biotech 26 2010 290 296