Comparative characterization of deletion derivatives of the modular xylanase XynA of Thermotoga maritima

Extremophiles

Volumn 10, Issue 5, 2006, Pages 373-381

  Kleine, Jörg ^a   Liebl, Wolfgang ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

Carbohydrate binding domain; Thermotoga maritima; Xylan binding; Xylanase

Indexed keywords

BACTERIAL DNA; ENDO 1,4 BETA XYLANASE; RECOMBINANT PROTEIN; XYLAN;

ARTICLE; CHEMISTRY; COMPARATIVE STUDY; ENZYME SPECIFICITY; ENZYMOLOGY; ESCHERICHIA COLI; GENE DELETION; GENETICS; KINETICS; METABOLISM; NUCLEOTIDE SEQUENCE; SOLUBILITY; THERMOTOGA MARITIMA;

BASE SEQUENCE; DNA, BACTERIAL; ENDO-1,4-BETA XYLANASES; ESCHERICHIA COLI; KINETICS; RECOMBINANT PROTEINS; SEQUENCE DELETION; SOLUBILITY; SUBSTRATE SPECIFICITY; THERMOTOGA MARITIMA; XYLANS;

THERMOTOGA MARITIMA; TRITICUM AESTIVUM SUBSP. SPELTA;

EID: 33749854901     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-006-0509-0     Document Type: Article

References (44)

1. Ali MK, Hayashi H, Karita S, Goto M, Kimura T, Sakka K, Ohmiya K (2001) Importance of the carbohydrate-binding module of Clostridium stercorarium Xyn10B to xylan hydrolysis. Biosci Biotechnol Biochem 65:41-47
2. Ali E, Zhao G, Sakka M, Kimura T, Ohmiya K, Sakka K (2005) Functions of Family-22 Carbohydrate-binding Module in Clostridium thermocellum Xyn10C. Biosci Biotechnol Biochem 69:160-165
3. Araki R, Ali MK, Sakka M, Kimura T, Sakka K, Ohmiya K (2004) Essential role of the family-22 carbohydrate-binding modules for β-1, 3-1,4-glucanase activity of Clostridium stercorarium Xyn10B. FEBS Lett 561:155-158
4. Black GW, Rixon JE, Clarke JH, Hazlewood GP, Theodorou MK, Morris P, Gilbert HJ (1996) Evidence that linker sequences and cellulose-binding domains enhance the activity of hemicellulases against complex substrates. Biochem J 319:515-520
5. Black GW, Rixon JE, Clarke JH, Hazlewood GP, Ferreira LMA, Bolam DN, Gilbert HJ (1997) Cellulose binding domains and linker sequences potentiate the activity of hemicellulases against complex substrates. J Biotechnol 57:59-69
6. Bolam DN, Ciruela A, McQueen-Mason S, Simpson P, Williamson MP, Rixon JE, Boraston A, Hazlewood GP, Gilbert HJ (1998) Pseudomonas cellulose-binding domains mediate their effects by increasing enzyme substrate proximity. Biochem J 331:775-781
7. Boraston AB, Kwan E, Chiu P, Warren RAJ, Kilburn DG (2003) Recognition and hydrolysis of noncrystalline cellulose. J Biol Chem 278:6120-6127
8. Boraston AB, McLean BW, Kormos JM, Alam M, Gilkes NR, Haynes CA, Tomme P, Kilburn DG, Warren RAJ (1999) Carbohydrate binding modules: diversity of structure and function. In: Gilbert HJ, Davies GJ, Henrissat B, Svensson B (eds) Recent advances in carbohydrate bioengineering. The Royal Society of Chemistry, Cambridge, pp 202-211
9. Charnock SJ, Bolam DN,Turkenburg JP, Gilbert HJ, Ferreira LM, Davies GJ, Fontes CM (2000) The X6 thermostabilizing domain of xylanases are carbohydrate-binding modules: structure and biochemistry of the Clostridium thermocellum X6b domain. Biochemistry 39:5013-5021
10. Chhabra SR, Kelly RM (2002) Biochemical characterization of Thermotoga maritima endoglucanase Cel74 with and without a carbohydrate binding module (CBM). FEBS Lett 531:375-380
11. Clarke JH, Davidson K, Gilbert HJ, Fontes CMGA, Hazlewood GP (1996) A modular xylanase from mesophilic Cellulomonas fimi contains the same cellulose-binding and thermostabilizing domains as xylanases from thermophilic bacteria. FEMS Microbiol Lett 139:27-35
12. Coughlan MP, Hazlewood GP (1993) β-1,4-D-xylan-degrading enzyme systems: biochemistry, molecular biology and applications. Biotechnol Appl Biochem 17:259-289
13. Decelle B, Tsang A, Storm RK (2004) Cloning, functional expression and characterisation of three Phanerochaete chrysosporium endo-1,4-β-xylanases. Curr Genet 46:166-175
14. Devillard E, Bera-Maillet C, Flint HJ, Scott KP, Newbold CJ, Wallace RJ, Jounany JP, Forano E (2003) Characterization of XYN10B, a modular xylanase from the ruminl protozoan Polyplastron multivesiculatum, with a family 22 carbohydrate-binding module that binds to cellulose. Biochem J 373:495-503
15. Dias FMV, Goyal A, Gilbert HJ, Prates JAM, Ferreira LMA, Fontes CMGA (2004) The N-terminal family 22 carbohydrate-binding module of xylanase 10B of Clostridium thermocellum is not a thermostabilizing domain. FEMS Microbiol Lett 238:71-78
16. Fontes CMGA, Hazlewood GP, Morag E, Hall J, Hirst BA, Gilbert HJ (1995) Evidence for a general role for non-catalytic thermostabilizing domains in xylanases from thermophilic bacteria. Biochem J 307:151-158
17. Gilbert HJ, Bolam DN, Szabo L, Xie H, Williamson MP, Simpson PJ, Jamal S, Boraston AB, Kilburn DG, Warren RAJ (2002) An update on carbohydrate binding modules. In: Terri TT, Svensson B, Gilbert HJ, Feizi T (eds) Carbohydrate bioengineering interdisciplinay approches. The Royal Society of Chemistry, Cambridge, pp 89-98
18. Gilkes NR, Henrissat B, Kilburn DG, Miller RC Jr, Warren RAJ (1991) Domains in microbial β-1,4-glycanases: Sequence conservation, function, and enzyme families. Microbiol Rev 55:303-315
19. Gill J, Rixon JE, Bolam DN, McQueen-Mason S, Simpson PJ, Williamson MP, Hazlewood GP, Gilbert HJ (1999) Type II and X cellulose-binding domains of Pseudomonas xylanase A potentiate catalytic activity against complex substrates by a common mechanism. Biochem J 342:473-480
20. Kim H, Jung KH, Pack MY (2000) Molecular characterization of xynX, a gene encoding a multidomain xylanase with a thermostabilizing domain from Clostridium thermocellum. Appl Microbiol Biotechnol 54:521-527
21. Kittur FS, Mangala SL, Abu Rus'd A, Kitaoka M, Tsujibo H, Hayashi K (2003) Fusion of family 2b carbohydrate-binding module increases the catalytic activity of a xylanase from Thermotoga maritima to soluble xylan. FEBS Lett 549:147-151
22. Kulkarni N, Shendye A, Rao M (1999) Molecular and biotechnological aspects of xylanases. FEMS Microbiol Rev 23:411-456
23. Lee Y-E, Lowe SE, Henrissat B, Zeikus JG (1993) Characterization of the active site and thermostability regions of endoxylanase from Thermoanaerobacterium saccharolyticum B6A-RI. J Bacteriol 175:5890-5898
24. Liebl W, Feil R, Gabelsberger J, Kellermann J, Schleifer KH (1992) Purification and characterization of a novel thermostable 4-α- glucanotransferase of Thermotoga maritima cloned in Escheerichia coli. Eur J Biochem 207:81-88
25. Linder M, Teeri TT (1997) The roles and function of cellulose-binding domains. J Biotechnol 57:15-28
26. Mangala SL, Kittur FS, Nishimoto M, Sakka K, Ohmiya K, Kitaoka M, Hayashi K (2003) Fusion of family VI cellulose binding domains to Bacillus halodurans xylanase increases its catalytic activity and substrate-binding capacity to insoluble xylan. J Mol Catal B Enzym 21:221-230
27. Meissner K, Wassenberg D, Liebl W (2000) The thermostabilizing domain of the modular xylanase XynA of Thermotoga maritima represents a novel type of binding domain with affinity for soluble xylan and mixed-linkage β-1,3/β-1,4-glucan. Mol Microbiol 36:898-912
28. Millward-Sadler SJ, Poole DM, Henrissat B, Hazlewood GP, Clarke JH, Gilbert HJ (1994) Evidence for a general role for high-affinity non-catalytic cellulose binding domains in microbial plant cell wall hydrolases. Mol Microbiol 11:375-382
29. Notenboom V, Boraston AB, Kilburn DG, Rose DR (2001) Crystal structures of the family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A in native and ligand-bound forms. Biochemistry 40:6248-6256
30. Notenboom V, Boraston AB, Williams SJ, Kilburn DG, Rose DR (2002) High-resolution crystal structures of the lectin-like xylan binding domain from Streptomyces lividans xylanase 10A with bound substrates reveal a novel mode of xylan binding. Biochemistry 41:4246-4254
31. Ruile P, Winterhalter C, Liebl W (1997) Isolation and analysis of a gene encoding α-glucuronidase, an enzyme with a novel primary structure involved in the breakdown of xylan. Mol Microbiol. 23:2676-2279
32. Scharpf M, Connelly GP, Lee GM, Boraston AB, Warren RA, McIntosh LP (2002) Site-specific characterization of the association of xylooligosaccharides with the CBM13 lectin-like xylan binding domain from Streptomyces lividans xylanase 10A by NMR spectroscopy. Biochemistry 41:4255-4263
33. Srisodsuk M, Lethio J, Linder M, Margolles-Clark E, Reinikainen T, Teeri TT (1997) Trichoderma reesei cellobiohydrolase disrupts the structure of starch. FEBS Lett 447:58-60
34. Studier FW, Moffat BA (1986) Use of bacteriophage T7 RNA polymerase to directly selective high expression of cloned genes. J Mol Biol 189:113-130
35. Sunna A, Gibbs MD, Bergquist PL (2000) A novel thermostable multidomain 1,4-β-xylanase from Caldibacillus cellulovorans and effect of its xylan-binding domain on enzyme activity. Microbiology 146:2947-2955
36. Sunna A, Gibbs MD, Bergquist PL (2001) Identification of novel beta-mannan- and beta-glucan-binding modules: evidence for a superfamily of carbohydrate-binding modules. Biochem J 356:791-798
37. Tomme P, Warren RAJ, Miller RC Jr, Kilburn DG, Gilkes NR (1995) Cellulose-binding domains: classification and properties. In: Saddler JN, Penner MH (eds) Enzymatic degradation of insoluble carbohydrates. American chemical society symposium series 618. American Chemical Society Press, San Diego, CA, pp 142-163
38. Warren RAJ (1996) Microbial hydrolysis of polysaccharides. Annu Rev Microbiol 50:183-212
39. Wassenberg D, Schurig H, Liebl W, Jaenicke R (1997) Xylanase XynA from the hyperthermophilic bacterium Thermotoga maritima: structure and stability of the recombinant enzyme and its isolated cellulosebinding domain. Protein Sci 6:1718-1726
40. Winterhalter C, Heinrich P, Candussio A, Wich G, Liebl W (1995) Identification of a novel cellulose-binding domain within the multidomain 120 kDa xylanase XynA of the hyperthermophilic bacterium Thermotoga maritima. Mol Microbiol 15:431-444
41. Winterhalter C, Liebl W (1995) Two extremely thermostable xylanases of the hyperthermophilic bacterium Thermotoga maritima MSB8. Appl Environ Microbiol 61:1810-1815
42. Xie H, Gilbert HJ, Charnock SJ, Davies GJ, Williamson MP, Simpson PJ, Raghotaa S, Fontes CMGA, Dias FMV, Ferrera LMA, Bolam DN (2001) Clostridium thermocellum Xyn10B carbohydrate-binding module 22-2: the role of conserved amino acids in ligand binding. Biochemistry 40:9167-9176
43. Yanish-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of M13mp18 and pUC19 vectors. Gene 33:103-109
44. Zverlov V, Piotukh K, Dakhova O, Velikodvorskaya G, Borris R (1996) The multidomain xylanase A of the hyperthermophilic bacterium Thermotoga neapolitana is extremely thermoresistant. Appl Microbiol Biotechnol 45:245-247