Binding specificity and thermodynamics of a family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A

Biochemistry

Volumn 40, Issue 21, 2001, Pages 6240-6247

  Boraston, Alisdair B ^a   Creagh, A Louise ^a   Alam, Md Mustafa ^a,b   Kormos, Jeffery M ^a   Tomme, Peter ^a,c   Haynes, Charles A ^a   Warren, R Antony J ^a   Kilburn, Douglas G ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b UNIVERSITY OF ALBERTA   (Canada)

^c TIBOTEC BVBA   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SITE;

ADSORPTION; ENTHALPY; POLYSACCHARIDES; THERMODYNAMICS;

BIOCHEMISTRY;

ARABINOSE; BACTERIAL ENZYME; CARBOHYDRATE BINDING PROTEIN; CELLULOSE; GALACTOSE; GLUCOSE; LACTOSE; MALTOSE; OLIGOSACCHARIDE; XYLAN; XYLAN ENDO 1,3 BETA XYLOSIDASE; XYLOSE;

ARTICLE; BACTERIUM CULTURE; BINDING AFFINITY; BINDING SITE; ENTHALPY; ENTROPY; ENZYME BINDING; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; THERMODYNAMICS; THERMOTOGA MARITIMA;

AMINO ACID MOTIFS; BINDING, COMPETITIVE; CALORIMETRY; CARBOHYDRATE METABOLISM; CARBOHYDRATES; CELLULOSE; MOLECULAR WEIGHT; POLYSACCHARIDES; PROTEIN BINDING; SOLUBILITY; SUBSTRATE SPECIFICITY; THERMODYNAMICS; THERMOTOGA MARITIMA; XYLAN ENDO-1,3-BETA-XYLOSIDASE; XYLANS; XYLOSIDASES;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; HORDEUM VULGARE SUBSP. VULGARE; THERMOTOGA MARITIMA; TRITICUM AESTIVUM SUBSP. SPELTA;

EID: 0035967513     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0101695     Document Type: Article

References (42)

1. Gilkes, N. R., Henrissat, B., Kilburn, D. G., Miller, R. C. J., and Warren, R. A. (1991) Microbiol. Rev. 55, 303-315.
2. Tomme, P., Boraston, A., McLean, B., Kormos, J., Creagh, A, L., Sturch, K., Gilkes, N. R., Haynes, C. A., Warren, R. A. J., and Kilburn, D. G. (1998) J. Chromatogr. B 715, 283-296.
3. Tomme, P., Warren, R. A., Miller, R. C., Jr., Kilburn, D. G., and Gilkes, N. R. (1995) in Enzymatic Degradation of Insoluble Polysaccharides (Saddler, J. N., and Penner, M., Eds.) pp 142-163, American Chemical Society, Washington, DC.
4. Tomme, P., Creagh, A. L., Kilburn, D. G., and Haynes, C. A. (1996) Biochemistry 35, 13885-13894.
5. Coutinho, J. B., Gilkes, N. R., Warren, R. A., Kilburn, D. G., and Miller, R. C. J. (1992) Mol. Microbiol. 6, 1243-1252.
6. Gilkes, N. R., Jervis, E., Henrissat, B., Tekant, B., Miller, R. C. J., Warren, R. A., and Kilburn, D. G. (1992) J. Biol. Chem. 267, 6743-6749.
7. Ong, E., Gilkes, N. R., Miller, R. C., Jr., Warren, R. A., and Kilburn, D. G. (1993) Biotechnol. Bioeng. 42, 401-409.
8. Creagh, A. L., Ong, E., Jervis, E., Kilburn, D. G., and Haynes, C. A. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 12229-12234.
9. McLean, B. W., Bray, M. R., Boraston, A. B., Gilkes, N. R., Haynes, C. A., and Kilburn, D. G. (2000) Protein Eng. 13, 801-809.
10. Johnson, P. E., Joshi, M. D., Tomme, P., Kilburn, D. G., and McIntosh, L. P. (1996) Biochemistry 35, 14381-14394.
11. Xu, G. Y., Ong, E., Gilkes, N. R., Kilburn, D. G., Muhandiram, D. R., Harris-Brandts, M., Carver, J. P., Kay, L. E., and Harvey, T. S. (1995) Biochemistry 34, 6993-7009.
12. Goldstein, M. A., Takagi, M., Hashida, S., Shoseyov, O., Doi, R. H., and Segel, I. H. (1993) J. Bacteriol. 175, 5762-5768.
13. Winterhalter, C., Heinrich, P., Candussio, A., Wich, G., and Liebl, W. (1995) Mol. Microbiol. 15, 431-444.
14. Boraston, A. B., McLean, B. W., Kormos, J. M., Alam, M., Gilkes, N. R., Haynes, C. A., Tomme, P., Kilburn, D. G., and Warren, R. A. J. (1999) in Recent advances in carbohydrate bioengineering (Gilbert, H. J., Davies, G. J., Henrissat, B., and Svensson, B., Eds.) pp 202-211, Royal Society of Chemistry, Cambridge.
15. Notenboom, V., Boraston, A. B., Kilburn, D. G., and Rose, D. R. (2001) Biochemistry 40, 6248-6256.
16. Wood, T. M., and Garcia-Campayo, V. (1990) Biodegradation 1, 147-161.
17. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) in Molecular Cloning: a Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
18. Liebl, W., Gabelsberger, J., and Schleifer, K. H. (1994) Mol. Gen. Genet. 242, 111-115.
19. Chaplin, M. F. (1986) in Carbohydrate Analysis: a Practical Approach (Chaplin, M. F., and Kennedy. J. F., Eds.) pp 1-36, IRL Press, Oxford.
20. Lever, M. (1973) Biochem. Med. 7, 274-281.
21. Mach, H., Middaugh, C. R., and Lewis, R. V. (1992) Anal. Biochem. 200, 74-80.
22. Bolam, D. N., Ciruela, A., Mcqueen-Mason, S., Simpson, P., Williamson, M. P., Rixon, J. E., Boraston, A., Hazlewood, G. P., and Gilbert, H. J. (1998) Biochem. J. 331, 775-781.
23. Linder, M., and Teeri, T. T. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 12251-12255.
24. Takeo, K. (1985) Electrophoresis 5, 187-195.
25. Tomme, P., Boraston, A., Kormos, J. M., Warren, R. A., and Kilburn, D. G. (2000) Enzyme Microb. Technol. 27, 453-458.
26. Boraston, A. B., Chiu, P., Warren, R. A. J., and Kilburn, D. G. (2000) Biochemistry 39, 11129-11136.
27. Linder, M., Mattinen, M. L., Kontteli, M., Lindberg, G., Stσhlberg, J., Drakenberg, T., Reinikainen, T., Pettersson, G., and Annila, A. (1995) Protein Sci. 4, 1056-1064.
28. Brun, E., Johnson, P. E., Creagh, A. L., Tomme, P., Webster, P., Haynes, C. A., and Mcintosh, L. P. (2000) Biochemistry 39, 2445-2458.
29. Jervis, E. J., Haynes, C. A., and Kilburn, D. G. (1997) J. Biol. Chem. 272, 24016-24023.
30. Lis, H., and Sharon, N. (1998) Chem. Rev. 98, 637-674.
31. Johnson, P. E., Tomme, P., Joshi, M. D., and McIntosh, L. P. (1996) Biochemistry 35, 13895-13906.
32. Wassenberg, D., Schurig, H., Liebl, W., and Jaenicke, R. (1997) Protein Sci. 6, 1718-1726.
33. Sigurskjold, B. W., and Bundle, D. R. (1992) J. Biol. Chem. 267, 8371-8376.
34. Simpson, P. J., Bolam, D. N., Cooper, A., Ciruela, A., Hazlewood, G. P., Gilbert, H. J., and Williamson, M. P. (1999) Structure Fold. Des. 7, 853-864.
35. Mattinen, M. L., Linder, M., Drakenberg, T., and Annila, A. (1998) Eur. J. Biochem. 256, 279-286.
36. Tormo, J., Lamed, R., Chirino, A. J., Morag, E., Bayer, E. A., Shoham, Y., and Steitz, T. A. (1996) EMBO J. 15, 5739-5751.
37. Brun, E., Moriaud, F., Gans, P., Blackledge, M. J., Barras, F., and Marion, D. (1997) Biochemistry 36, 16074-16086.
38. Surolia, A., Sharon, N., and Schwarz, F. P. (1996) J. Biol. Chem. 271, 17697-17703.
39. Sturtevant, J. M. (1977) Proc. Natl. Acad. Sci U.S.A. 74, 2236-2240.
40. Murphy, K. P., and Gill, S. J. (1990) Thermochim. Acta 172, 11-20.
41. Meissner, K., Wassenberg, D., and Liebl, W. (2000) Mol. Microbiol. 36, 898-912.
42. Charnock, S. J., Bolam, D. N., Turkenburg, J. P., Gilbert, H. J., Ferreira, L. M., Davies, G. J., and Fontes, C. M. (2000) Biochemistry 39, 5013-5021.