메뉴 건너뛰기




Volumn 33, Issue 4, 2010, Pages 359-372

Phylogenetic and evolutionary analysis of Vibrio parahaemolyticus and Vibrio alginolyticus isolates based on toxR gene sequence

Author keywords

16S rRNA gene; Phylogenetic analysis; toxR gene; V. alginolyticus; V. parahemolyticus

Indexed keywords

BACTERIAL PROTEIN; DNA BINDING PROTEIN; MEMBRANE PROTEIN; SEA WATER; TOXR PROTEIN, BACTERIA; TRANSCRIPTION FACTOR;

EID: 78650237629     PISSN: 11217138     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (24)

References (45)
  • 1
    • 0034897709 scopus 로고    scopus 로고
    • Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
    • ANISIMOVA M., BIELAWSKI J.P., YANG Z. (2001). Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol. Biol. Evol. 18, 1585-1592.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1585-1592
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 2
    • 0036272936 scopus 로고    scopus 로고
    • Accuracy and power of bayes prediction of amino acid sites under positive selection
    • ANISIMOVA M., BIELAWSKI J.P.YANG Z. (2002). Accuracy and power of bayes prediction of amino acid sites under positive selection. Mol. Biol. Evol. 19, 950-958.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 950-958
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 5
    • 0035987249 scopus 로고    scopus 로고
    • Evolutionary and functional analyses of variants of the toxin-coregulated pilus protein TcpA from toxigenic Vibrio cholerae non-O1/non-0139 serogroup isolates
    • BOYD E.F.WALDOR M.K. (2002). Evolutionary and functional analyses of variants of the toxin-coregulated pilus protein TcpA from toxigenic Vibrio cholerae non-O1/non-0139 serogroup isolates. Microbiol. 148, 1655-1666.
    • (2002) Microbiol. , vol.148 , pp. 1655-1666
    • Boyd, E.F.1    Waldor, M.K.2
  • 6
    • 0025737116 scopus 로고
    • Use of the polymerase chain reaction in detection of culturable and nonculturable Vibrio vulnificus cells
    • BRAUNS L.A., HUDSON M.C., OLIVER J.D. (1991). Use of the polymerase chain reaction in detection of culturable and nonculturable Vibrio vulnificus cells. Appl. Environ. Microbiol. 57, 2651-2655.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 2651-2655
    • Brauns, L.A.1    Hudson, M.C.2    Oliver, J.D.3
  • 7
    • 70349909729 scopus 로고    scopus 로고
    • Comparative evolutionary analysis of the major structural subunit of Vibrio vulnificus type IV pili
    • CHATTOPADHYAY S., PARANJPYE R.N., DYKHUIZEN D.E., SOKURENKO E.V., STROM M.S. (2009). Comparative evolutionary analysis of the major structural subunit of Vibrio vulnificus type IV pili. Mol. Biol. Evol 26, 2185-2196.
    • (2009) Mol. Biol. Evol , vol.26 , pp. 2185-2196
    • Chattopadhyay, S.1    Paranjpye, R.N.2    Dykhuizen, D.E.3    Sokurenko, E.V.4    Strom, M.S.5
  • 9
    • 12244280875 scopus 로고    scopus 로고
    • A collagenase-targeted multiplex PCR assay for identification of Vibrio alginolyticus, Vibrio cholerae, and Vibrio parahaemolyticus
    • DI PINTO A., CICCARESE G., TANTILLO G., CATALANO D., FORTE V.T. (2005). A collagenase-targeted multiplex PCR assay for identification of Vibrio alginolyticus, Vibrio cholerae, and Vibrio parahaemolyticus. J. Food Prot. 68, 150-153.
    • (2005) J. Food Prot. , vol.68 , pp. 150-153
    • Di Pinto, A.1    Ciccarese, G.2    Tantillo, G.3    Catalano, D.4    Forte, V.T.5
  • 10
    • 0026527415 scopus 로고
    • Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences
    • DORSCH M., LANE D., STACKEBRANDT E. (1992). Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences. Int. J. Syst. Bacteriol. 42, 58-63.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 58-63
    • Dorsch, M.1    Lane, D.2    Stackebrandt, E.3
  • 11
    • 49049108952 scopus 로고    scopus 로고
    • Proline-rich sequence recognition domains (PRD): Ligands, function and inhibition
    • FREUND C., SCHMALZ H.G., STICHT J., KUHNE R. (2008). Proline-rich sequence recognition domains (PRD): ligands, function and inhibition. Handb. Exp. Pharmacol. 407-429.
    • (2008) Handb. Exp. Pharmacol. , pp. 407-429
    • Freund, C.1    Schmalz, H.G.2    Sticht, J.3    Kuhne, R.4
  • 12
    • 33644839741 scopus 로고    scopus 로고
    • Vibrio parahaemolyticus in shellfish and clinical samples during two large epidemics of diarrhoea in southern Chile
    • FUENZALIDA L., HERNANDEZ C., TORO J., RIOSECO M.L., ROMERO J., ESPEJO R.T. (2006). Vibrio parahaemolyticus in shellfish and clinical samples during two large epidemics of diarrhoea in southern Chile. Environ. Microbiol. 8, 675-683.
    • (2006) Environ. Microbiol. , vol.8 , pp. 675-683
    • Fuenzalida, L.1    Hernandez, C.2    Toro, J.3    Rioseco, M.L.4    Romero, J.5    Espejo, R.T.6
  • 14
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • HALL T.A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series. 41, 95-98.
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 15
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • HASEGAWA M., KISHINO H., YANO T. (1985). Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22, 160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 16
    • 0031814928 scopus 로고    scopus 로고
    • Necrotizing fasciitis due to Vibrio alginolyticus following an injury inflicted by a stingray
    • Ho RL., TANG W.M., LO K.S., YUEN K.Y. (1998). Necrotizing fasciitis due to Vibrio alginolyticus following an injury inflicted by a stingray. Scand. J. Infect. Dis. 30, 192-193.
    • (1998) Scand. J. Infect. Dis. , vol.30 , pp. 192-193
    • Ho, R.L.1    Tang, W.M.2    Lo, K.S.3    Yuen, K.Y.4
  • 18
    • 0344959574 scopus 로고    scopus 로고
    • Identification of Vibrio parahaemolyticus strains at the species level by PCR targeted to the toxR gene
    • KIM YB., OKUDA J., MATSUMOTO C., TAKAHASHI N., HASHIMOTO S., NISHIBUCHI M. (1999). Identification of Vibrio parahaemolyticus strains at the species level by PCR targeted to the toxR gene. J. Clin. Microbiol. 37, 1173-1177.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 1173-1177
    • Kim, Y.B.1    Okuda, J.2    Matsumoto, C.3    Takahashi, N.4    Hashimoto, S.5    Nishibuchi, M.6
  • 19
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • KIMURA M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 21
    • 0027166658 scopus 로고
    • Vibrio parahaemolyticus has a homolog of the Vibrio cholerae toxRS operon that mediates environmentally induced regulation of the thermostable direct hemolysin gene
    • LIN Z., KUMAGAI K., BABA K., MEKALANOS J.J., NISHIBUCHI M. (1993). Vibrio parahaemolyticus has a homolog of the Vibrio cholerae toxRS operon that mediates environmentally induced regulation of the thermostable direct hemolysin gene. J. Bacteriol. 175, 3844-3855.
    • (1993) J. Bacteriol. , vol.175 , pp. 3844-3855
    • Lin, Z.1    Kumagai, K.2    Baba, K.3    Mekalanos, J.J.4    Nishibuchi, M.5
  • 23
    • 5444226303 scopus 로고    scopus 로고
    • Characterization of patfiogenic Vibrio parahaemolyticus isolates from clinical sources in Spain and comparison with Asian and North American pandemic isolates
    • MARTINEZ-URTAZA J., LOZANO-LEON A., DEPAOLA A., ISHIBASHI M., SHIMADA K., NISHIBUCHI M., LIEBANA E. (2004). Characterization of patfiogenic Vibrio parahaemolyticus isolates from clinical sources in Spain and comparison with Asian and North American pandemic isolates. J. Clin. Microbiol. 42, 4672-4678.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 4672-4678
    • Martinez-Urtaza, J.1    Lozano-Leon, A.2    Depaola, A.3    Ishibashi, M.4    Shimada, K.5    Nishibuchi, M.6    Liebana, E.7
  • 24
    • 0027217872 scopus 로고
    • Vibrio alginolyticus wound infection after exposure to sea water in an air crash
    • MATSIOTA-BERNARD P., NAUCIEL C (1993). Vibrio alginolyticus wound infection after exposure to sea water in an air crash. Eur. J. Clin. Microbiol. Infect. Dis. 12, 474-475.
    • (1993) Eur. J. Clin. Microbiol. Infect. Dis. , vol.12 , pp. 474-475
    • Matsiota-Bernard, P.1    Nauciel, C.2
  • 26
    • 0034118512 scopus 로고    scopus 로고
    • An unusual source of Vibrio alginolyticusassociated otitis: Prolonged colonization or freshwater exposure?
    • MUKHERJI A., SCHROEDER S., DEYLING C., PROCOP G.W. (2000). An unusual source of Vibrio alginolyticusassociated otitis: prolonged colonization or freshwater exposure? Arch. Otolaryngol. Head Neck Surg. 126, 790-791.
    • (2000) Arch. Otolaryngol. Head Neck Surg. , vol.126 , pp. 790-791
    • Mukherji, A.1    Schroeder, S.2    Deyling, C.3    Procop, G.W.4
  • 27
    • 0032143012 scopus 로고    scopus 로고
    • Utility of 16S-23S rRNA spacer region methodology: How similar are interspace regions within a genome and between strains for closely related organisms?
    • NAGPAL M.L., FOX K.F, Fox A. (1998). Utility of 16S-23S rRNA spacer region methodology: how similar are interspace regions within a genome and between strains for closely related organisms? J. Microbiol. Meth. 33, 211-219.
    • (1998) J. Microbiol. Meth. , vol.33 , pp. 211-219
    • Nagpal, M.L.1    Fox, K.F.2    Fox, A.3
  • 28
    • 0034458778 scopus 로고    scopus 로고
    • Rapid method for species-specific identification of Vibrio cholerae using primers targeted to the gene of outer membrane protein OmpW
    • NANDI B., NANDY R.K., MUKHOPADHYAY S., NAIR G.B., SHIMADA T., GHOSE A.C. (2000). Rapid method for species-specific identification of Vibrio cholerae using primers targeted to the gene of outer membrane protein OmpW. J. Clin. Microbiol. 38, 4145-4151.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 4145-4151
    • Nandi, B.1    Nandy, R.K.2    Mukhopadhyay, S.3    Nair, G.B.4    Shimada, T.5    Ghose, A.C.6
  • 29
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • NIELSEN R., YANG Z. (1998). Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics. 148, 929-936.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 30
    • 0344304712 scopus 로고    scopus 로고
    • The use of PCR to aid in the rapid identification of Vibrio harveyi isolates
    • DOI 10.1046/j.1365-2672.2003.02128.x
    • OAKEY H.J., LEVY N., BOURNE D.G., CULLEN B., THOMAS A. (2003). The use of PCR to aid in the rapid identification of Vibrio harveyi isolates. J. Appl. Microbiol. 95, 1293-1303. (Pubitemid 37506119)
    • (2003) Journal of Applied Microbiology , vol.95 , Issue.6 , pp. 1293-1303
    • Oakey, H.J.1    Levy, N.2    Bourne, D.G.3    Cullen, B.4    Thomas, A.5
  • 31
    • 0002142215 scopus 로고    scopus 로고
    • Vibrio species
    • M.P. Doyle, L.R. Beuchat, T.J. Montville, eds. ASM Press, Washington, D.C
    • OLIVER J.D., KAPER J.B. (1997). Vibrio Species. In: M.P. Doyle, L.R. Beuchat, T.J. Montville, eds. Food microbiology: fundamentals and frontiers. ASM Press, Washington, D.C 228-264.
    • (1997) Food Microbiology: Fundamentals and Frontiers , pp. 228-264
    • Oliver, J.D.1    Kaper, J.B.2
  • 32
    • 0033988967 scopus 로고    scopus 로고
    • A region of the transmembrane regulatory protein ToxR that tethers the transcriptional activation domain to the cytoplasmic membrane displays wide divergence among Vibrio species
    • OSORIO C.R., KLOSE K.E. (2000). A region of the transmembrane regulatory protein ToxR that tethers the transcriptional activation domain to the cytoplasmic membrane displays wide divergence among Vibrio species. J. Bacteriol. 182, 526-528.
    • (2000) J. Bacteriol. , vol.182 , pp. 526-528
    • Osorio, C.R.1    Klose, K.E.2
  • 33
    • 76849100045 scopus 로고    scopus 로고
    • Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes
    • PASCUAL J., MACIAN M.C., ARAHAL D.R., GARAY E., PUJALTE M.J. (2010). Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes. Int. J. Syst. Evol. Microbiol. 60, 154-165.
    • (2010) Int. J. Syst. Evol. Microbiol. , vol.60 , pp. 154-165
    • Pascual, J.1    Macian, M.C.2    Arahal, D.R.3    Garay, E.4    Pujalte, M.J.5
  • 34
    • 0028238190 scopus 로고
    • The light organ symbiont Vibrio fischeri possesses a homolog of the Vibrio cholerae transmembrane transcriptional activator ToxR
    • REICH K.A., SCHOOLNIK G.K. (1994). The light organ symbiont Vibrio fischeri possesses a homolog of the Vibrio cholerae transmembrane transcriptional activator ToxR. J. Bacteriol. 176, 3085-3088.
    • (1994) J. Bacteriol. , vol.176 , pp. 3085-3088
    • Reich, K.A.1    Schoolnik, G.K.2
  • 35
    • 3843122634 scopus 로고    scopus 로고
    • Procedure di isolamento e caratterizzazione di Vibrio spp. di importanza clinica
    • RIPABELLI G., GRASSO G.M., SAMMARCO M.L., LUZZI I. (1997). Procedure di isolamento e caratterizzazione di Vibrio spp. di importanza clinica. Rapporti ISTISAN. 31, 1-55.
    • (1997) Rapporti Istisan. , vol.31 , pp. 1-55
    • Ripabelli, G.1    Grasso, G.M.2    Sammarco, M.L.3    Luzzi, I.4
  • 36
    • 0028239563 scopus 로고
    • Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences
    • RUIMY R., BREITTMAYER V., ELBAZE P., LAFAY B., BOUSSEMART O., GAUTHIER M., CHRISTEN R. (1994). Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences. Int. J. Syst. Bacteriol. 44, 416-426.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 416-426
    • Ruimy, R.1    Breittmayer, V.2    Elbaze, P.3    Lafay, B.4    Boussemart, O.5    Gauthier, M.6    Christen, R.7
  • 40
    • 0036865611 scopus 로고    scopus 로고
    • Enterovibrio norvegicus gen. nov., sp. nov., isolated from the gut of turbot (Scophthalmus maximus) larvae: A new member of the family Vibrionaceae
    • THOMPSON F.L., HOSTE B., THOMPSON C.C., GORIS J., GOMEZ-GIL B., HUYS L., DE VOS P., SWINGS J. (2002). Enterovibrio norvegicus gen. nov., sp. nov., isolated from the gut of turbot (Scophthalmus maximus) larvae: a new member of the family Vibrionaceae. Int. J. Syst. Evol. Microbiol. 52, 2015-2022.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 2015-2022
    • Thompson, F.L.1    Hoste, B.2    Thompson, C.C.3    Goris, J.4    Gomez-Gil, B.5    Huys, L.6    De Vos, P.7    Swings, J.8
  • 41
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • THOMPSON J.D., GIBSON T.J., PLEWNIAK F., JEANMOUGIN F., HIGGINS D.G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 42
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • YANG Z. (1994). Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39, 306-314.
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-314
    • Yang, Z.1
  • 43
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • YANG Z. (1997). PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13, 555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 44
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • YANG Z., NIELSEN R., GOLDMAN N., PEDERSEN A.M. (2000). Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics. 155, 431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 45
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • DOI 10.1093/molbev/msi097
    • YANG Z., WONG W.S., NIELSEN R. (2005). Bayes empirical bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22, 1107-1118. (Pubitemid 40471423)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.4 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.W.2    Nielsen, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.