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Volumn 33, Issue 3, 1998, Pages 211-219

Utility of 16S-23S rRNA spacer region methodology: How similar are interspace regions within a genome and between strains for closely related organisms?

Author keywords

16S 23S interspace; Bacillus; Ribosomal RNA

Indexed keywords

RIBOSOME RNA; RNA 16S;

EID: 0032143012     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7012(98)00054-2     Document Type: Article
Times cited : (66)

References (26)
  • 1
    • 0025875752 scopus 로고
    • Comparative analysis of Bacillus anthracis, Bacillus cereus, and related species on the basis of reverse transcriptase sequencing of 16S rRNA
    • Ash C., Farrow J., Dorsch M., Stackebrandt E., Collins M. Comparative analysis of Bacillus anthracis, Bacillus cereus, and related species on the basis of reverse transcriptase sequencing of 16S rRNA. Int. J. Syst. Bacteriol. 41:1991;343-346.
    • (1991) Int. J. Syst. Bacteriol. , vol.41 , pp. 343-346
    • Ash, C.1    Farrow, J.2    Dorsch, M.3    Stackebrandt, E.4    Collins, M.5
  • 2
    • 0000725686 scopus 로고    scopus 로고
    • The role of genetic exchange in bacterial evolution
    • Cohan F. The role of genetic exchange in bacterial evolution. ASM News. 62:1996;631-636.
    • (1996) ASM News , vol.62 , pp. 631-636
    • Cohan, F.1
  • 3
    • 0029027263 scopus 로고
    • Intraspecific variation in small-subunit rRNA sequences in Genbank: Why single sequences may not adequately represent prokaryotic taxa
    • Clayton R.A., Sutton G., Hinkle P.S. Jr., Bult C., Fields C. Intraspecific variation in small-subunit rRNA sequences in Genbank: why single sequences may not adequately represent prokaryotic taxa. Int. J. Syst. Bacteriol. 45:1995;595-599.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 595-599
    • Clayton, R.A.1    Sutton, G.2    Hinkle P.S., Jr.3    Bult, C.4    Fields, C.5
  • 4
    • 0010234188 scopus 로고    scopus 로고
    • Unpublished, Direct submission to Genebank, assession # Z82044. B. subtilis 25 kb genomic DNA segment (from sspE to katA)
    • Cummings, N.J. Unpublished, 1996. Direct submission to Genebank, assession # Z82044. B. subtilis 25 kb genomic DNA segment (from sspE to katA).
    • (1996)
    • Cummings, N.J.1
  • 5
    • 0029957951 scopus 로고    scopus 로고
    • Comparison of the small 16S to 23S intergenic spacer region (ISR) of the rRNA operons of some Escherichia coli strains of the ECOR collection and E. coli K-12
    • García-Martínez J., Martínez-Murcia A., Antón A.I., Rodríquez-Valera F. Comparison of the small 16S to 23S intergenic spacer region (ISR) of the rRNA operons of some Escherichia coli strains of the ECOR collection and E. coli K-12. J. Bacteriol. 178:1996;6374-6377.
    • (1996) J. Bacteriol. , vol.178 , pp. 6374-6377
    • García-Martínez, J.1    Martínez-Murcia, A.2    Antón, A.I.3    Rodríquez-Valera, F.4
  • 6
    • 0030743072 scopus 로고    scopus 로고
    • Inter- And intraspecies comparison of the 16S-23S rRNA operon intergenic spacer regions of six Listeria spp
    • Graham T.A., Golsteyn-Thomas E.J., Thomas J.E., Gannon V.P.J. Inter- and intraspecies comparison of the 16S-23S rRNA operon intergenic spacer regions of six Listeria spp. Int. J. Syst. Bacteriol. 47:1997;863-869.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 863-869
    • Graham, T.A.1    Golsteyn-Thomas, E.J.2    Thomas, J.E.3    Gannon, V.P.J.4
  • 7
    • 0022182564 scopus 로고
    • Nucleotide sequence of the Bacillus subtilis ribosomal RNA operon, rrnB
    • Green C.J., Stewart G.C., Hollis M.A., Vold B.S., Bott K.F. Nucleotide sequence of the Bacillus subtilis ribosomal RNA operon, rrnB. Gene. 37:1985;261-266.
    • (1985) Gene , vol.37 , pp. 261-266
    • Green, C.J.1    Stewart, G.C.2    Hollis, M.A.3    Vold, B.S.4    Bott, K.F.5
  • 8
    • 0031022625 scopus 로고    scopus 로고
    • Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers
    • Hain T., Ward-Rainey N., Kroppenstedt R.M., Stackebrandt E., Rainey F.A. Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers. Int. J. Syst. Bacteriol. 47:1997;202-206.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 202-206
    • Hain, T.1    Ward-Rainey, N.2    Kroppenstedt, R.M.3    Stackebrandt, E.4    Rainey, F.A.5
  • 9
    • 0029071647 scopus 로고
    • Genetic variability of Bacillus anthracis and related species
    • Harrell L.J., Andersen G.L., Wilson K.H. Genetic variability of Bacillus anthracis and related species. J. Clin. Microbiol. 33:1995;1847-1850.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 1847-1850
    • Harrell, L.J.1    Andersen, G.L.2    Wilson, K.H.3
  • 10
    • 0027461618 scopus 로고
    • Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms
    • Jenson M.A., Webster J.A., Straus N. Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Appl. Envir. Microbiol. 59:1993;945-952.
    • (1993) Appl. Envir. Microbiol. , vol.59 , pp. 945-952
    • Jenson, M.A.1    Webster, J.A.2    Straus, N.3
  • 11
    • 0018242685 scopus 로고
    • Deoxyribonucleic acid relatedness between Bacillus anthracis, Bacillus cereus and Bacillus thuringiensis.
    • Kaneko T., Nozaki R., Aizawa K. Deoxyribonucleic acid relatedness between Bacillus anthracis, Bacillus cereus and Bacillus thuringiensis. Microbiol. Immunol. 22:1978;639-641.
    • (1978) Microbiol. Immunol. , vol.22 , pp. 639-641
    • Kaneko, T.1    Nozaki, R.2    Aizawa, K.3
  • 12
    • 0030031126 scopus 로고    scopus 로고
    • 16S rRNA and 16S to 23S internal transcribed spacer sequence analysis reveal inter-and intraspecific Bifidobacterium phylogeny
    • Leblond-Bourget N., Philippe H., Mangin I., Decaris B. 16S rRNA and 16S to 23S internal transcribed spacer sequence analysis reveal inter-and intraspecific Bifidobacterium phylogeny. Int. J. Syst. Bacteriol. 46:1996;102-111.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 102-111
    • Leblond-Bourget, N.1    Philippe, H.2    Mangin, I.3    Decaris, B.4
  • 13
    • 0010230040 scopus 로고    scopus 로고
    • Unpublished, Direct submission to Genebank, assession #D84213. Sequence analysis of trnI-feuABC of Bacillus subtilis genome I
    • Liu, H., Yasumoto, K., Haga, K., Ohashi, Y., Yoshikawa, H., Takahashi, H. Unpublished, 1996. Direct submission to Genebank, assession #D84213. Sequence analysis of trnI-feuABC of Bacillus subtilis genome I.
    • (1996)
    • Liu, H.1    Yasumoto, K.2    Haga, K.3    Ohashi, Y.4    Yoshikawa, H.5    Takahashi, H.6
  • 14
    • 0020480196 scopus 로고
    • TRNA Genes are found between the 16S and 23S rRNA genes in Bacillus subtilis
    • Loughney K., Lund E., Dahlberg J.E. tRNA Genes are found between the 16S and 23S rRNA genes in Bacillus subtilis. Nucl. Acid. Res. 10:1982;1607-1624.
    • (1982) Nucl. Acid. Res. , vol.10 , pp. 1607-1624
    • Loughney, K.1    Lund, E.2    Dahlberg, J.E.3
  • 15
    • 0030294456 scopus 로고    scopus 로고
    • Characterization of PCR products from bacilli using electrospray ionization FTICR mass spectrometry
    • Muddiman D., Wunschel D., Liu C., Paša-Tolić L., Fox K., Fox A., Anderson G., Smith R. Characterization of PCR products from bacilli using electrospray ionization FTICR mass spectrometry. Anal. Chem. 68:1996;3705-3712.
    • (1996) Anal. Chem. , vol.68 , pp. 3705-3712
    • Muddiman, D.1    Wunschel, D.2    Liu, C.3    Paša-Tolić, L.4    Fox, K.5    Fox, A.6    Anderson, G.7    Smith, R.8
  • 16
    • 0024372883 scopus 로고
    • Taxonomic relationship of black-pigmented Bacillus subtilis strains and a proposal for Bacillus atrophaeus spec. nov
    • Nakamura L. Taxonomic relationship of black-pigmented Bacillus subtilis strains and a proposal for Bacillus atrophaeus spec. nov. Int J. System. Bacteriol. 39:1989;295-300.
    • (1989) Int J. System. Bacteriol. , vol.39 , pp. 295-300
    • Nakamura, L.1
  • 17
    • 0028700721 scopus 로고
    • Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin
    • Ogasawara N., Nakai S., Yoshikawa H. Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin. DNA Res. 1:1994;1-14.
    • (1994) DNA Res. , vol.1 , pp. 1-14
    • Ogasawara, N.1    Nakai, S.2    Yoshikawa, H.3
  • 18
    • 0028215622 scopus 로고
    • Bacillus mojavensis sp. nov. distinguishable from Bacillus subtilis by sexual isolation, divergence in DNA sequence and difference in fatty acid composition
    • Roberts M., Nakamura L., Cohan F. Bacillus mojavensis sp. nov. distinguishable from Bacillus subtilis by sexual isolation, divergence in DNA sequence and difference in fatty acid composition. Inter. J. System. Bacteriol. 44:1994;256-264.
    • (1994) Inter. J. System. Bacteriol. , vol.44 , pp. 256-264
    • Roberts, M.1    Nakamura, L.2    Cohan, F.3
  • 21
    • 0016713782 scopus 로고
    • Taxonomic study of Bacillus by deoxyribonucleic acid-deoxyribonucleic acid hybridization and interspecific transformation
    • Seki T., Oshima T., Oshima Y. Taxonomic study of Bacillus by deoxyribonucleic acid-deoxyribonucleic acid hybridization and interspecific transformation. Int. J. Syst. Bacteriol. 25:1975;258-270.
    • (1975) Int. J. Syst. Bacteriol. , vol.25 , pp. 258-270
    • Seki, T.1    Oshima, T.2    Oshima, Y.3
  • 22
    • 0018189658 scopus 로고
    • Deoxyribonucleic acid homology and taxonomy of the genus Bacillus
    • Seki T., Chung C.-K., Mikami H., Oshima Y. Deoxyribonucleic acid homology and taxonomy of the genus Bacillus. Int. J. Syst. Bacteriol. 28:1978;182-189.
    • (1978) Int. J. Syst. Bacteriol. , vol.28 , pp. 182-189
    • Seki, T.1    Chung, C.-K.2    Mikami, H.3    Oshima, Y.4
  • 23
    • 0028028182 scopus 로고
    • Taxonomic note. A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E., Goebel B. Taxonomic note. A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J. System. Bacteriol. 44:1994;846-849.
    • (1994) Int J. System. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.2
  • 24
    • 0028949286 scopus 로고
    • Discrimination among the B. cereus group, in comparison to B. subtilis, by structural carbohydrate profiles and ribosomal RNA spacer region PCR
    • Wunschel D., Fox K., Black G., Fox A. Discrimination among the B. cereus group, in comparison to B. subtilis, by structural carbohydrate profiles and ribosomal RNA spacer region PCR. System. Appl. Microbiol. 17:1994;625-635.
    • (1994) System. Appl. Microbiol. , vol.17 , pp. 625-635
    • Wunschel, D.1    Fox, K.2    Black, G.3    Fox, A.4
  • 26
    • 0030961036 scopus 로고    scopus 로고
    • Near-Zero background cloning of PCR Products
    • Zeng Q., Eidsness M.K., Summers A.O. Near-Zero background cloning of PCR Products. Biotechniques. 23:1997;412-417.
    • (1997) Biotechniques , vol.23 , pp. 412-417
    • Zeng, Q.1    Eidsness, M.K.2    Summers, A.O.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.