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Volumn 42, Issue 12, 2010, Pages 2137-2145

Selection of Variovorax paradoxus-like bacteria in the mycosphere and the role of fungal-released compounds

Author keywords

Bacterial survival; Lyophyllum sp. strain Karsten exudates; NMR; Variovorax paradoxus

Indexed keywords

BACTERIAL COMMUNITY; BACTERIAL GROWTH; BACTERIAL SURVIVAL; BEFORE AND AFTER; BULK SOILS; CARBON SOURCE; CARBONACEOUS COMPOUNDS; CULTURABLE; CULTURABLE BACTERIA; FIELD SOIL; IN-VITRO; LIQUID CULTURE; LYOPHYLLUM SP. STRAIN KARSTEN EXUDATES; NMR; PROTON NMR ANALYSIS; STERILIZED SOILS; VARIOVORAX PARADOXUS;

EID: 78650208067     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2010.08.009     Document Type: Article
Times cited : (53)

References (38)
  • 1
    • 33645053027 scopus 로고    scopus 로고
    • Metabolic profiling of Burkholderia cenocepacia, Burkholderia ambifaria, and Burkholderia pyrrocinia isolates from maize rhizosphere
    • Alice C., Lasinio G.J., Dalmastri C., Sprocati A., Tabacchioni S., Bevivino A., Chiarini L. Metabolic profiling of Burkholderia cenocepacia, Burkholderia ambifaria, and Burkholderia pyrrocinia isolates from maize rhizosphere. Microbial Ecology 2005, 50:385-395.
    • (2005) Microbial Ecology , vol.50 , pp. 385-395
    • Alice, C.1    Lasinio, G.J.2    Dalmastri, C.3    Sprocati, A.4    Tabacchioni, S.5    Bevivino, A.6    Chiarini, L.7
  • 3
    • 0036421611 scopus 로고    scopus 로고
    • Mycorrhizosphere interactions to improve plant fitness and soil quality
    • Barea J.M., Azcon R., Zcon-Aguilar C. Mycorrhizosphere interactions to improve plant fitness and soil quality. Antonie Van Leeuwenhoek 2002, 81:343-351.
    • (2002) Antonie Van Leeuwenhoek , vol.81 , pp. 343-351
    • Barea, J.M.1    Azcon, R.2    Zcon-Aguilar, C.3
  • 4
    • 0036251551 scopus 로고    scopus 로고
    • Characterisation of bacteria from Pinus sylvestris-Suillus luteus mycorrhizas and their effects on root-fungus interactions and plant growth
    • Bending G.D., Poole E.J., Whipps J.M., Read D.J. Characterisation of bacteria from Pinus sylvestris-Suillus luteus mycorrhizas and their effects on root-fungus interactions and plant growth. FEMS Microbiology Ecology 2002, 39:219-227.
    • (2002) FEMS Microbiology Ecology , vol.39 , pp. 219-227
    • Bending, G.D.1    Poole, E.J.2    Whipps, J.M.3    Read, D.J.4
  • 7
    • 58149242718 scopus 로고    scopus 로고
    • Genomics of pyrrolnitrin biosynthetic loci: evidence for conservation and whole-operon mobility within Gram-negative bacteria
    • Costa R., van Aarle I.M., Mendes R., van Elsas J.D. Genomics of pyrrolnitrin biosynthetic loci: evidence for conservation and whole-operon mobility within Gram-negative bacteria. Environmental Microbiology 2008, 11:159-175.
    • (2008) Environmental Microbiology , vol.11 , pp. 159-175
    • Costa, R.1    van Aarle, I.M.2    Mendes, R.3    van Elsas, J.D.4
  • 9
    • 0035163562 scopus 로고    scopus 로고
    • Analysis of the bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA
    • Duineveld B.M., Kowalchuk G.A., Keizer A., van Elsas J.D., van Veen J.A. Analysis of the bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA. Applied and Environmental Microbiology 2001, 67:172-178.
    • (2001) Applied and Environmental Microbiology , vol.67 , pp. 172-178
    • Duineveld, B.M.1    Kowalchuk, G.A.2    Keizer, A.3    van Elsas, J.D.4    van Veen, J.A.5
  • 10
    • 21844486573 scopus 로고
    • Glycerol production by two filamentous fungi grown at different ionic and nonionic osmotics and cheese whey
    • El-Kady I., Moubasher M., Eman Mostafa M. Glycerol production by two filamentous fungi grown at different ionic and nonionic osmotics and cheese whey. Folia Microbiologica 1994, 39:203-207.
    • (1994) Folia Microbiologica , vol.39 , pp. 203-207
    • El-Kady, I.1    Moubasher, M.2    Eman Mostafa, M.3
  • 11
    • 0030898617 scopus 로고    scopus 로고
    • Metabolic and genotypic fingerprinting of fluorescent pseudomonads associated with the Douglas fir Laccaria bicolor mycorrhizosphere
    • Frey P., Frey-Klett P., Garbaye J., Berge O., Heulin T. Metabolic and genotypic fingerprinting of fluorescent pseudomonads associated with the Douglas fir Laccaria bicolor mycorrhizosphere. Applied and Environmental Microbiology 1997, 63:1852-1860.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 1852-1860
    • Frey, P.1    Frey-Klett, P.2    Garbaye, J.3    Berge, O.4    Heulin, T.5
  • 13
    • 1642343260 scopus 로고    scopus 로고
    • Microbial interactions in the mycorrhizosphere and their significance for sustainable agriculture
    • Johansson J.F., Paul L.R., Finlay R.D. Microbial interactions in the mycorrhizosphere and their significance for sustainable agriculture. FEMS Microbiology Ecology 2004, 48:1-13.
    • (2004) FEMS Microbiology Ecology , vol.48 , pp. 1-13
    • Johansson, J.F.1    Paul, L.R.2    Finlay, R.D.3
  • 14
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Wiley, Chichester, E. Stackebrandt, M. Goodfellow (Eds.)
    • Lane J.D. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. Wiley, Chichester. E. Stackebrandt, M. Goodfellow (Eds.).
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, J.D.1
  • 15
    • 38949131843 scopus 로고    scopus 로고
    • Bacterial mycophagy: definition and diagnosis of a unique bacterial-fungal interaction
    • Leveau J.H., Preston G.M. Bacterial mycophagy: definition and diagnosis of a unique bacterial-fungal interaction. New Phytologist 2007, 177:859-876.
    • (2007) New Phytologist , vol.177 , pp. 859-876
    • Leveau, J.H.1    Preston, G.M.2
  • 17
    • 0007606020 scopus 로고
    • The establishment of vesicular-arbuscular mycorrhiza under aseptic conditions
    • Mosse B. The establishment of vesicular-arbuscular mycorrhiza under aseptic conditions. Journal of General Microbiology 1962, 27:509-520.
    • (1962) Journal of General Microbiology , vol.27 , pp. 509-520
    • Mosse, B.1
  • 19
    • 78650209209 scopus 로고    scopus 로고
    • Lyophyllum sp. strain Karsten alleviated pH pressure in acid soil and enhances the survival of Variovorax paradoxus HB44 and other bacteria in the mycosphere
    • doi: 10.1016/j.soilbio.2010.08.019
    • Nazir, R., Warmink, J.A., Boersma, F.G.H., Van Elsas, J.D., 2010b. Lyophyllum sp. strain Karsten alleviated pH pressure in acid soil and enhances the survival of Variovorax paradoxus HB44 and other bacteria in the mycosphere. Soil Biology and Biochemistry, doi: 10.1016/j.soilbio.2010.08.019.
    • (2010) Soil Biology and Biochemistry
    • Nazir, R.1    Warmink, J.A.2    Boersma, F.G.H.3    Van Elsas, J.D.4
  • 20
    • 34548624814 scopus 로고    scopus 로고
    • Mycorrhiza and soil bacteria influence extractable iron and manganese in soil and uptake by soybean
    • Nogueira M.A., Nehls U., Hampp R., Poralla K., Cardoso E.J.B.N. Mycorrhiza and soil bacteria influence extractable iron and manganese in soil and uptake by soybean. Plant and Soil 2007, 298:273-284.
    • (2007) Plant and Soil , vol.298 , pp. 273-284
    • Nogueira, M.A.1    Nehls, U.2    Hampp, R.3    Poralla, K.4    Cardoso, E.J.B.N.5
  • 21
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nübel U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. Journal of Bacteriology 1996, 178:5636-5643.
    • (1996) Journal of Bacteriology , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6
  • 22
    • 0002275272 scopus 로고    scopus 로고
    • Characterization of the diversity of ecologically important microbes by rep-PCR genomic fingerprinting
    • Kluwer Academic Publishers, G.A. Kowalchuk, F.J. De Bruijn, I.M. Head, A.D.L. Akkermans, J.D. van Elsas (Eds.)
    • Rademaker J.L.W., Louws F.J., Versalovic J., De Bruijn F.J. Characterization of the diversity of ecologically important microbes by rep-PCR genomic fingerprinting. Molecular Microbial Ecology Manual 2004, 611-644. Kluwer Academic Publishers. G.A. Kowalchuk, F.J. De Bruijn, I.M. Head, A.D.L. Akkermans, J.D. van Elsas (Eds.).
    • (2004) Molecular Microbial Ecology Manual , pp. 611-644
    • Rademaker, J.L.W.1    Louws, F.J.2    Versalovic, J.3    De Bruijn, F.J.4
  • 23
    • 0036433826 scopus 로고    scopus 로고
    • Physiological and genetic characterization of fluorescent Pseudomonas associated with Cantharellus cibarius
    • Rangel-Castro J.I., Levenfors J.J., Danell E. Physiological and genetic characterization of fluorescent Pseudomonas associated with Cantharellus cibarius. Canadian Journal of Microbiology 2002, 48:739-748.
    • (2002) Canadian Journal of Microbiology , vol.48 , pp. 739-748
    • Rangel-Castro, J.I.1    Levenfors, J.J.2    Danell, E.3
  • 24
    • 0036309339 scopus 로고    scopus 로고
    • 13C NMR study of exudation and storage of carbohydrates and amino acids in the ectomycorrhizal edible mushroom Cantharellus cibarius
    • 13C NMR study of exudation and storage of carbohydrates and amino acids in the ectomycorrhizal edible mushroom Cantharellus cibarius. Mycologia 2002, 94:190-199.
    • (2002) Mycologia , vol.94 , pp. 190-199
    • Rangel-Castro, J.I.1    Danell, E.2    Pfeffer, P.E.3
  • 25
    • 0042707939 scopus 로고    scopus 로고
    • Oxalotrophic bacteria
    • Sahin N. Oxalotrophic bacteria. Research in Microbiology 2003, 154:399-407.
    • (2003) Research in Microbiology , vol.154 , pp. 399-407
    • Sahin, N.1
  • 26
    • 33846120159 scopus 로고    scopus 로고
    • Desulfurization of aromatic sulfonates by rhizosphere bacteria: high diversity of the asfA gene
    • Schmalenberger A., Kertesz M.A. Desulfurization of aromatic sulfonates by rhizosphere bacteria: high diversity of the asfA gene. Environmental Microbiology 2007, 9:535-545.
    • (2007) Environmental Microbiology , vol.9 , pp. 535-545
    • Schmalenberger, A.1    Kertesz, M.A.2
  • 27
    • 0001947363 scopus 로고    scopus 로고
    • Rhizosphere as a habitat for soil microorganisms
    • Marcel Dekker, Inc, New York, J.D. Van Elsas, J.T. Trevors, E.M.H. Wellington (Eds.)
    • Sörensen J. Rhizosphere as a habitat for soil microorganisms. Modern Soil Microbiology 1997, 21-45. Marcel Dekker, Inc, New York. J.D. Van Elsas, J.T. Trevors, E.M.H. Wellington (Eds.).
    • (1997) Modern Soil Microbiology , pp. 21-45
    • Sörensen, J.1
  • 28
    • 85057419013 scopus 로고    scopus 로고
    • The soil environment
    • CRC Press, New York, J.D. Van Elsas, J.K. Jansson, J.T. Trevors (Eds.)
    • Standing D., Killöham K. The soil environment. Modern Soil Microbiology II 2007, 1-22. CRC Press, New York. J.D. Van Elsas, J.K. Jansson, J.T. Trevors (Eds.).
    • (2007) Modern Soil Microbiology II , pp. 1-22
    • Standing, D.1    Killöham, K.2
  • 29
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology Evolution 2007, 24:1596-1599.
    • (2007) Molecular Biology Evolution , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 30
    • 0031866080 scopus 로고    scopus 로고
    • Bacterial community structure at defined locations of Pinus sylvestris - Suillus bovinus and Pinus sylvestris - Paxillus involutus mycorrhizospheres in dry pine forest humus and nursery peat
    • Timonen S., Jorgensen K.S., Haahtela K., Sen R. Bacterial community structure at defined locations of Pinus sylvestris - Suillus bovinus and Pinus sylvestris - Paxillus involutus mycorrhizospheres in dry pine forest humus and nursery peat. Canadian Journal of Microbiology 1998, 44:499-513.
    • (1998) Canadian Journal of Microbiology , vol.44 , pp. 499-513
    • Timonen, S.1    Jorgensen, K.S.2    Haahtela, K.3    Sen, R.4
  • 31
    • 34447498691 scopus 로고    scopus 로고
    • Influence of arbuscular mycorrhizal mycelial exudates on soil bacterial growth and community structure
    • Toljander J.F., Lindahl B.D., Paul L.R., Elfstrand M., Finlay R.D. Influence of arbuscular mycorrhizal mycelial exudates on soil bacterial growth and community structure. FEMS Microbiology Ecology 2007, 61:295-304.
    • (2007) FEMS Microbiology Ecology , vol.61 , pp. 295-304
    • Toljander, J.F.1    Lindahl, B.D.2    Paul, L.R.3    Elfstrand, M.4    Finlay, R.D.5
  • 32
    • 36849029148 scopus 로고    scopus 로고
    • Orchid-associated bacteria produce indole-3-acetic acid, promote seed germination, and increase their microbial yield in response to exogenous auxin
    • Tsavkelova E.A., Cherdyntseva T.A., Klimova S.Y., Shestakov A.I., Botina S.G., Netrusov A.I. Orchid-associated bacteria produce indole-3-acetic acid, promote seed germination, and increase their microbial yield in response to exogenous auxin. Archives of Microbiology 2007, 188:655-664.
    • (2007) Archives of Microbiology , vol.188 , pp. 655-664
    • Tsavkelova, E.A.1    Cherdyntseva, T.A.2    Klimova, S.Y.3    Shestakov, A.I.4    Botina, S.G.5    Netrusov, A.I.6
  • 33
    • 49449089387 scopus 로고    scopus 로고
    • Selection of bacterial populations in the mycosphere of Laccaria proxima - is type III secretion involved?
    • Warmink J.A., van Elsas J.D. Selection of bacterial populations in the mycosphere of Laccaria proxima - is type III secretion involved?. The ISME Journal 2008, 2:887-900.
    • (2008) The ISME Journal , vol.2 , pp. 887-900
    • Warmink, J.A.1    van Elsas, J.D.2
  • 34
    • 58549085435 scopus 로고    scopus 로고
    • Universal and species-specific bacterial " fungiphiles" in the mycospheres of different basidiomycetous fungi
    • Warmink J.A., Nazir R., van Elsas J.D. Universal and species-specific bacterial " fungiphiles" in the mycospheres of different basidiomycetous fungi. Environmental Microbiology 2009, 11:300-312.
    • (2009) Environmental Microbiology , vol.11 , pp. 300-312
    • Warmink, J.A.1    Nazir, R.2    van Elsas, J.D.3
  • 35
    • 65549087397 scopus 로고    scopus 로고
    • Migratory response of soil bacteria to Lyophyllum sp. strain Karsten in soil microcosms
    • Warmink J.A., van Elsas J.D. Migratory response of soil bacteria to Lyophyllum sp. strain Karsten in soil microcosms. Applied and Environmental Microbiology 2009, 75:2820-2830.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 2820-2830
    • Warmink, J.A.1    van Elsas, J.D.2
  • 36
    • 0025832055 scopus 로고
    • Comamonadaceae, a new family encompassing the Acidovorans rRNA complex, including Variovorax paradoxus gen. nov., comb. nov., for Alcaligenes paradoxus (Davis 1969)
    • Willems A., De Ley J., Gillis M., Kersters K. Comamonadaceae, a new family encompassing the Acidovorans rRNA complex, including Variovorax paradoxus gen. nov., comb. nov., for Alcaligenes paradoxus (Davis 1969). International Journal of Systematic Bacteriology 1991, 41:445-450.
    • (1991) International Journal of Systematic Bacteriology , vol.41 , pp. 445-450
    • Willems, A.1    De Ley, J.2    Gillis, M.3    Kersters, K.4
  • 38


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