Metabolic and genotypic fingerprinting of fluorescent Pseudomonads associated with the douglas fir-Laccaria bicolor mycorrhizosphere

Applied and Environmental Microbiology

Volumn 63, Issue 5, 1997, Pages 1852-1860

  Frey, Pascal ^a,b   Frey Klett, Pascale ^a   Garbaye, Jean ^a   Berge, Odile ^b,c   Heulin, Thierry ^b,c  

^a CEMAGREF   (France)

^b CNRS   (France)

^c IRFM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; DNA FINGERPRINTING; GENETIC POLYMORPHISM; GENOTYPE; MYCORRHIZA; NONHUMAN; PHENOTYPE; POLYMERASE CHAIN REACTION; PSEUDOMONADACEAE; PSEUDOMONAS FLUORESCENS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SOIL MICROFLORA; TAXONOMY;

EID: 0030898617     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.5.1852-1860.1997     Document Type: Article

References (52)

1. 13C NMR and HPLC analyses. New Phytol. 118:547-552.
2. Berge, O., P. Mavingui, J. Balandreau, T. Heulin, and A. Lelu. Unpublished data.
3. Bochner, B. R. 1989. "Breathprints" at the microbial level. ASM News 55:536-539.
4. 13C-NMR study, p. 41. In Abstracts of the Ninth North American Conference on Mycorrhizae, Guelph, Ontario, Canada, 8-12 August 1993.
5. Danell, E., S. Alström, and A. Ternström. 1993. Pseudomonas fluorescens in association with fruit bodies of the ectomycorrhizal mushroom Cantharellus cibarius. Mycol. Res. 97:1148-1152.
6. de Bruijn, F. J. 1992. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergenic consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58:2180-2187.
7. Duponnois, R., and J. Garbaye. 1991. Mycorrhization helper bacteria associated with the Douglas fir-Laccaria laccata symbiosis: effects in aseptic and in glasshouse conditions. Ann. Sci. Forest. 48:239-251.
8. Duponnois, R., and J. Garbaye. 1992. Application des BAM (bactéries auxiliaires de la mycorhization) à l'inoculation du Douglas par Laccaria laccata S238 en pépinière forestière. Rev. Forest. Fr. 44:491-500.
9. Duponnois, R., J. Garbaye, D. Bouchard, and J. L. Churin. 1993. The fungus-specificity of mycorrhization helper bacteria (MHB) used as an alternative to soil fumigation for ectomycorrhizal inoculation of bare-root Douglas fir planting stocks with Laccaria laccata. Plant Soil 157:257-262.
10. Frey, P., J. J. Smith, L. Albar, P. Prior, G. S. Saddler, D. Trigalet-Demery, and A. Trigalet. 1996. Bacteriocin typing of Burkholderia (Pseudomonas) solanacearum race 1 of the French West Indies and correlation with genomic variation of the pathogen. Appl. Environ. Microbiol. 62:473-479.
11. Frey-Klett, P. 1996. Ecologie d'un Pseudomonas fluorescens auxiliaire de la mycorhization. Ph.D thesis. Université Paris XI - Orsay, Paris, France.
12. Garbaye, J. 1991. Biological interactions in the mycorrhizosphere. Experientia 47:370-375.
13. Garbaye, J. 1994. Helper bacteria: a new dimension to the mycorrhizal symbiosis. New Phytol. 128:197-210.
14. Garland, J. L. 1996. Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization. Soil Biol. Biochem. 28:213-221.
15. Garland, J. L. 1996. Patterns of potential C source utilization by rhizosphere communities. Soil Biol. Biochem. 28:223-230.
16. Grayston, S. J., and C. D. Campbell. 1996. Functional biodiversity of microbial communities in the rhizospheres of hybrid larch (Larix eurolepsis) and Sitka spruce (Picea sitchensis). Tree Physiol. 16:1031-1038.
17. Grayston, S. J., C. D. Campbell, and D. Vaughan. 1994. Microbial diversity in the rhizospheres of different tree species, p. 155-157. In C. E. Pankhurst (ed.), Soil biota: management in sustainable farming systems. CSIRO, Adelaide, Australia.
18. Gurtler, V., V. A. Wilson, and B. C. Mayall. 1991. Classification of medically important clostridia using restriction endonuclease site differences of PCR-amplified 16S-rDNA. J. Gen. Microbiol. 137:2673-2679.
19. 14C-glucose by asymbiotic and mycorrhizal orchid protocorms. New Phytol. 96:263-273.
20. Hulton, C. S. J., C. F. Higgins, and P. M. Sharp. 1991. ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5:825-834.
21. Ineichen, K., and V. Wiemken. 1992. Changes in the fungus-specific, soluble-carbohydrate pool during rapid and synchronous ectomycorrhiza formation of Picea abies with Pisolithus tinctorius. Mycorrhiza 2:1-7.
22. Jaunet, T., G. Laguerre, P. Lemanceau, R. Frutos, and J. L. Notteghem. 1995. Diversity of Pseudomonas fuscovaginae and other fluorescent pseudomonads isolated from diseased rice. Phytopathology 85:1534-1541.
23. King, E. O., M. K. Ward, and D. E. Raney. 1954. Two simple media for the demonstration of pyocyanine and fluorescein. J. Lab. Clin. Med. 44:301-307.
24. Laguerre, G., M. R. Allard, F. Revoy, and N. Amarger. 1994. Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S-rRNA genes. Appl. Environ. Microbiol. 60:56-63.
25. Laguerre, G., L. Rigottier-Gois, and P. Lemanceau. 1994. Fluorescent Pseudomonas species categorized by using polymerase chain reaction (PCR)/ restriction fragment analysis of 16S rDNA. Mol. Ecol. 3:479-487.
26. Latour, X., T. Corberand, G. Laguerre, F. Allard, and P. Lemanceau. 1996. The composition of fluorescent pseudomonad populations associated with roots is influenced by plant and soil type. Appl. Environ. Microbiol. 62:2449-2456.
27. Lelu, A. 1994. Clusters and factors: neural algorithms for a novel representation of huge and highly multidimensional data sets, p. 241-248. In E. Diday, Y. Lechevallier, M. Schader, P. Bertrand, and B. Burtchy (ed.), New approaches in classification and data analysis. Springer-Verlag KG, Berlin, Germany.
28. Lemanceau, P., T. Corberand, L. Gardan, X. Latour, G. Laguerre, J. M. Boeufgras, and C. Alabouvette. 1995. Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.), on the diversity of soilborne populations of fluorescent pseudomonads. Appl. Environ. Microbiol. 61:1004-1012.
29. Leyval, C., and J. Berthelin. 1993. Rhizodeposition and net release of soluble organic compounds by pine and beech seedlings inoculated with rhizobacteria and ectomycorrhizal fungi. Biol. Fertil. Soils 15:259-267.
30. Linderman, R. G. 1988. Mycorrhizal interactions with the rhizosphere microflora: the mycorrhizosphere effect. Phytopathology 78:366-371.
31. Louws, F. J., D. W. Fulbright, C. T. Stephens, and F. J. de Bruijn. 1994. Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR. Appl. Environ. Microbiol. 60:2286-2295.
32. Mamoun, M., and J. M. Olivier. 1989. Dynamique des populations fongiques et bactériennes de la rhizosphère des noisettiers truffiers. II. Chélation du fer et répartition taxonomique chez les Pseudomonas fluorescents. Agronomie 9:345-351.
33. 13C NMR studies of the carbohydrate storage in ectomycorrhizal fungi. Physiol. Veg. 22:733-743.
34. Mavingui, P., G. Laguerre, O. Berge, and T. Heulin. 1992. Genetic and phenotypic diversity of Bacillus polymyxa in soil and in the wheat rhizosphere. Appl. Environ. Microbiol. 58:1894-1903.
35. Meyer, J. R., and R. G. Linderman. 1986a. Response of subterranean clover to dual inoculation with vesicular-arbuscular mycorrhizal fungi and a plant growth-promoting bacterium, Pseudomonas putida. Soil Biol. Biochem. 18: 185-190.
36. Meyer, J. R., and R. G. Linderman. 1986b. Selective influence on populations of rhizosphere or rhizoplane bacteria and actinomycetes by mycorrhizas formed by Glomus fasciculatum. Soil Biol. Biochem. 18:191-196.
37. Müller, J., T. Boller, and A. Wiemken. 1995. Trehalose and trehalase in plants: recent developments. Plant Sci. 112:1-9.
38. Nick, G., and K. Lindström. 1994. Use of repetitive sequences and the polymerase chain reaction to fingerprint the genomic DNA of Rhizobium galegae strains and to identify the DNA obtained from sonicating the liquid cultures and root nodules. Syst. Appl. Microbiol. 17:265-273.
39. Niederer, M., W. Pankow, and A. Wiemken. 1989. Trehalose synthesis in mycorrhiza of Norway spruce: an indicator of vitality. Eur. J. Forest. Pathol. 19:14-20.
40. Olsson, P. A., M. Chalot, E. Bååth, R. D. Finlay, and B. Söderström. 1996. Ectomycorrhizal mycelia reduce bacterial activity in a sandy soil. FEMS Microbiol. Ecol. 21:77-86.
41. Palleroni, N. J. 1984. Genus I Pseudomonas, p. 141-199. In N. R. Krieg and J. G. Holt (ed.), Bergey's manual of determinative bacteriology, 3rd ed. The Williams & Wilkins Co., Baltimore.
42. Rovira, A. D. 1965. Interaction between plant roots and soil micro-organisms. Annu. Rev. Microbiol. 19:241-266.
43. Rygiewicz, P. T., and C. P. Andersen. 1994. Mycorrhizae alter quality and quantity of carbon allocated below ground. Nature 369:58-60.
44. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
45. Schneider, M., and F. J. de Bruijn. 1996. Rep-PCR mediated genomic fingerprinting of rhizobia and computer-assisted phylogenetic pattern analysis. World J. Microbiol. Biotechnol. 12:163-174.
46. Schubert, A., P. Wyss, and A. Wiemken. 1992. Occurrence of trehalose in vascular-arbuscular mycorrhizal fungi and in mycorrhizal roots. J. plant Physiol. 140:41-45.
47. Stanier, R. Y., N. J. Palleroni, and M. Doudoroff. 1966. The aerobic pseudomonads: a taxonomic study. J. Gen. Microbiol. 43:159-271.
48. Swofford, D. L. 1993. PAUP: phylogenetic analysis using parsimony, version 3-1.1. Illinois Natural History Survey, Champaign.
49. van Laere, A. 1989. Trehalose, reserve and/or stress metabolite? FEMS Microbiol. Rev. 63:201-210.
50. Waschkies, C., A. Schropp, and H. Marschner. 1994. Relations between grapevine replant disease and root colonization of grapevine (Vitis sp.) by fluorescent pseudomonads and endomycorrhizal fungi. Plant Soil. 162:219-227.
51. Weisburg, W. G., S. M. Barns, D. A. Pelletier, and D. J. Lane. 1991. 16S ribosomal DNA amplification for phylogenic study. J. Bacteriol. 173:697-703.
52. Wünsche, L., L. Brüggemann, and W. Babel. 1995. Determination of substrate utilization patterns of soil microbial communities: an approach to assess population changes after hydrocarbon pollution. FEMS Microbiol. Ecol. 17:295-306.