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Volumn 75, Issue 7, 2009, Pages 1979-1989

Selection of Sphingomonadaceae at the base of Laccaria proxima and Russula exalbicans fruiting bodies

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ACTIVITIES; BACTERIAL COMMUNITIES; BULK SOILS; CLONE LIBRARIES; COMMUNITY STRUCTURES; DENATURING GRADIENT GEL ELECTROPHORESIS; ECTOMYCORRHIZAL FUNGUS; FRUITING BODIES; HOT SPOTS;

EID: 63849090105     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02489-08     Document Type: Article
Times cited : (38)

References (44)
  • 1
    • 0033394169 scopus 로고    scopus 로고
    • Degradation of the phenoxy acid herbicide diclofop-methyl by Sphingomonas paucimobilis isolated from a Canadian prairie soil
    • Adkins, A. 1999. Degradation of the phenoxy acid herbicide diclofop-methyl by Sphingomonas paucimobilis isolated from a Canadian prairie soil. J. Ind. Microbiol. Biotechnol. 23:332-335.
    • (1999) J. Ind. Microbiol. Biotechnol , vol.23 , pp. 332-335
    • Adkins, A.1
  • 2
    • 33749532645 scopus 로고    scopus 로고
    • Effect of Tilemsi phosphate rock-solubilizing microorganisms on phosphorus uptake and yield of field-grown wheat (Triticum aestivum L.) in Mali
    • Babana, A. H., and H. Antoun. 2006. Effect of Tilemsi phosphate rock-solubilizing microorganisms on phosphorus uptake and yield of field-grown wheat (Triticum aestivum L.) in Mali. Plant Soil 287:51-58.
    • (2006) Plant Soil , vol.287 , pp. 51-58
    • Babana, A.H.1    Antoun, H.2
  • 3
    • 0036251551 scopus 로고    scopus 로고
    • Characterisation of bacteria from Pinus sylvestris-Suillus luteus mycorrhizas and their effects on root-fungus interactions and plant growth
    • Bending, G. D., E. J. Poole, J. M. Whipps, and D. J. Read. 2002. Characterisation of bacteria from Pinus sylvestris-Suillus luteus mycorrhizas and their effects on root-fungus interactions and plant growth. FEMS Microbiol. Ecol. 39:219-227.
    • (2002) FEMS Microbiol. Ecol , vol.39 , pp. 219-227
    • Bending, G.D.1    Poole, E.J.2    Whipps, J.M.3    Read, D.J.4
  • 5
    • 33747644154 scopus 로고    scopus 로고
    • Microbial degradation of nonylphenol and other alkylphenols - our evolving view
    • Corvini, P. F., A. Schaffer, and D. Schlosser. 2006. Microbial degradation of nonylphenol and other alkylphenols - our evolving view. Appl. Microbiol. Biotechnol. 72:223-243.
    • (2006) Appl. Microbiol. Biotechnol , vol.72 , pp. 223-243
    • Corvini, P.F.1    Schaffer, A.2    Schlosser, D.3
  • 6
    • 33746863682 scopus 로고    scopus 로고
    • Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm
    • Costa, R., N. C. M. Gomes, R. S. Peixoto, N. Rumjanek, G. Berg, L. C. S. Mendonca-Hagler, and K. Smalla. 2006. Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm. Soil Biol. Biochem. 38:2434-2447.
    • (2006) Soil Biol. Biochem , vol.38 , pp. 2434-2447
    • Costa, R.1    Gomes, N.C.M.2    Peixoto, R.S.3    Rumjanek, N.4    Berg, G.5    Mendonca-Hagler, L.C.S.6    Smalla, K.7
  • 7
    • 0035380609 scopus 로고    scopus 로고
    • Isolation and characterization of polycyclic aromatic hydrocarbon- degrading bacteria associated with the rhizosphere of salt marsh plants
    • Daane, L. L., I. Harjono, G. J. Zylstra, and M. M. Häggblom. 2001. Isolation and characterization of polycyclic aromatic hydrocarbon- degrading bacteria associated with the rhizosphere of salt marsh plants. Appl. Environ. Microbiol. 67:2683-2691.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 2683-2691
    • Daane, L.L.1    Harjono, I.2    Zylstra, G.J.3    Häggblom, M.M.4
  • 8
    • 23744460935 scopus 로고    scopus 로고
    • Living in a fungal world: Impact of fungi on soil bacterial niche development
    • de Boer, W., L. B. Folman, R. C. Summerbell, and L. Boddy. 2005. Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol. Rev. 29:795-811.
    • (2005) FEMS Microbiol. Rev , vol.29 , pp. 795-811
    • de Boer, W.1    Folman, L.B.2    Summerbell, R.C.3    Boddy, L.4
  • 9
    • 3843143718 scopus 로고    scopus 로고
    • Mycorrhizal fungi and their multifunctional roles
    • Finlay, R. D. 2004. Mycorrhizal fungi and their multifunctional roles. Mycologist 18:91-96.
    • (2004) Mycologist , vol.18 , pp. 91-96
    • Finlay, R.D.1
  • 11
    • 0030898617 scopus 로고    scopus 로고
    • Metabolic and genotypic fingerprinting of fluorescent pseudomonads associated with the Douglas fir-Laccaria bicolor mycorrhizosphere
    • Frey, P., P. Frey-Klett, J. Garbaye, O. Berge, and T. Heulin. 1997. Metabolic and genotypic fingerprinting of fluorescent pseudomonads associated with the Douglas fir-Laccaria bicolor mycorrhizosphere. Appl. Environ. Microbiol. 63:1852-1860.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 1852-1860
    • Frey, P.1    Frey-Klett, P.2    Garbaye, J.3    Berge, O.4    Heulin, T.5
  • 12
    • 34548405265 scopus 로고    scopus 로고
    • The mycorrhiza helper bacteria revisited
    • Frey-Klett, P., J. Garbaye, and M. Tarkka. 2007. The mycorrhiza helper bacteria revisited. New Phytol. 176:22-36.
    • (2007) New Phytol , vol.176 , pp. 22-36
    • Frey-Klett, P.1    Garbaye, J.2    Tarkka, M.3
  • 13
    • 23944525404 scopus 로고    scopus 로고
    • Computational improvements reveal great bacterial diversity and high metal toxicity in soil
    • Gans, J., M. Wolinsky, and J. Dunbar. 2005. Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309: 1387-1390.
    • (2005) Science , vol.309 , pp. 1387-1390
    • Gans, J.1    Wolinsky, M.2    Dunbar, J.3
  • 14
    • 0028590738 scopus 로고
    • Helper bacteria - a new dimension to the mycorrhizal symbiosis
    • Garbaye, J. 1994. Helper bacteria - a new dimension to the mycorrhizal symbiosis. New Phytol. 128:197-210.
    • (1994) New Phytol , vol.128 , pp. 197-210
    • Garbaye, J.1
  • 16
    • 1642343260 scopus 로고    scopus 로고
    • Microbial interactions in the mycorrhizosphere and their significance for sustainable agriculture
    • Johansson, J. F., L. R. Paul, and R. D. Finlay. 2004. Microbial interactions in the mycorrhizosphere and their significance for sustainable agriculture. FEMS Microbiol. Ecol. 48:1-13.
    • (2004) FEMS Microbiol. Ecol , vol.48 , pp. 1-13
    • Johansson, J.F.1    Paul, L.R.2    Finlay, R.D.3
  • 17
    • 33746052091 scopus 로고    scopus 로고
    • Identification and functional analysis of the genes for naphthalenesulfonate catabolism by Sphingomonas xenophaga BN6
    • Keck, A., D. Conradt, A. Mahler, A. Stolz, R. Mattes, and J. Klein. 2006. Identification and functional analysis of the genes for naphthalenesulfonate catabolism by Sphingomonas xenophaga BN6. Microbiology 152:1929-1940.
    • (2006) Microbiology , vol.152 , pp. 1929-1940
    • Keck, A.1    Conradt, D.2    Mahler, A.3    Stolz, A.4    Mattes, R.5    Klein, J.6
  • 18
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow ed, Wiley, Chichester, United Kingdom
    • Lane, J. D. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. Wiley, Chichester, United Kingdom.
    • (1991) Nucleic acid techniques in bacterial systematics , pp. 115-175
    • Lane, J.D.1
  • 19
    • 38949131843 scopus 로고    scopus 로고
    • Bacterial mycophagy: Definition and diagnosis of a unique bacterial-fungal interaction
    • Leveau, J. H., and G. M. Preston. 2008. Bacterial mycophagy: definition and diagnosis of a unique bacterial-fungal interaction. New Phytol. 177:859-876.
    • (2008) New Phytol , vol.177 , pp. 859-876
    • Leveau, J.H.1    Preston, G.M.2
  • 20
    • 6944247410 scopus 로고    scopus 로고
    • Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons
    • Leys, N. M., A. Ryngaert, L. Bastiaens, W. Verstraete, E. M. Top, and D. Springael. 2004. Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons. Appl. Environ. Microbiol. 70:1944-1955.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 1944-1955
    • Leys, N.M.1    Ryngaert, A.2    Bastiaens, L.3    Verstraete, W.4    Top, E.M.5    Springael, D.6
  • 21
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone, C, and R. Knight. 2005. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71:8228-8235.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 23
    • 21344459663 scopus 로고    scopus 로고
    • Biological costs and benefits to plant-microbe interactions in the rhizosphere
    • Morgan, J. A., G. D. Bending, and P. J. White. 2005. Biological costs and benefits to plant-microbe interactions in the rhizosphere. J. Exp. Bot. 56: 1729-1739.
    • (2005) J. Exp. Bot , vol.56 , pp. 1729-1739
    • Morgan, J.A.1    Bending, G.D.2    White, P.J.3
  • 24
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., E. C. de Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 25
    • 33748996193 scopus 로고    scopus 로고
    • Linear 3-hy-droxybutyrate tetramer (HB4) produced by Sphingomonas sp. is characterized as a growth promoting factor for some rhizomicrofloral composers
    • Ogita, N., Y. Hashidoko, S. H. Limin, and S. Tahara. 2006. Linear 3-hy-droxybutyrate tetramer (HB4) produced by Sphingomonas sp. is characterized as a growth promoting factor for some rhizomicrofloral composers. Biosci. Biotechnol. Biochem. 70:2325-2329.
    • (2006) Biosci. Biotechnol. Biochem , vol.70 , pp. 2325-2329
    • Ogita, N.1    Hashidoko, Y.2    Limin, S.H.3    Tahara, S.4
  • 26
    • 0038071684 scopus 로고    scopus 로고
    • The unique aromatic catabolic genes in sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs)
    • Pinyakong, O., H. Habe, and T. Omori. 2003. The unique aromatic catabolic genes in sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs). J. Gen. Appl. Microbiol. 49:1-19.
    • (2003) J. Gen. Appl. Microbiol , vol.49 , pp. 1-19
    • Pinyakong, O.1    Habe, H.2    Omori, T.3
  • 27
    • 0036433826 scopus 로고    scopus 로고
    • Physiological and genetic characterization of fluorescent Pseudomonas associated with Can-tharellus cibarius
    • Rangel-Castro, J. I., J. J. Levenfors, and E. Danell. 2002. Physiological and genetic characterization of fluorescent Pseudomonas associated with Can-tharellus cibarius. Can. J. Microbiol. 48:739-748.
    • (2002) Can. J. Microbiol , vol.48 , pp. 739-748
    • Rangel-Castro, J.I.1    Levenfors, J.J.2    Danell, E.3
  • 28
    • 0042707939 scopus 로고    scopus 로고
    • Oxalotrophic bacteria
    • Sahin, N. 2003. Oxalotrophic bacteria. Res. Microbiol. 154:399-407.
    • (2003) Res. Microbiol , vol.154 , pp. 399-407
    • Sahin, N.1
  • 29
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei, 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-25.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR. a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P. D., and J. Handelsman. 2005. Introducing DOTUR. a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71:1501-1506.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 31
    • 0031178951 scopus 로고    scopus 로고
    • The mathematical theory of communication. 1963
    • Shannon, C. E. 1997. The mathematical theory of communication. 1963. MD Comput. 14:306-317.
    • (1997) MD Comput , vol.14 , pp. 306-317
    • Shannon, C.E.1
  • 32
  • 33
    • 0035463837 scopus 로고    scopus 로고
    • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
    • Singleton, D. R., M. A. Furlong, S. L. Rathbun, and W. B. Whitman. 2001. Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl. Environ. Microbiol. 67:4374-4376.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 4374-4376
    • Singleton, D.R.1    Furlong, M.A.2    Rathbun, S.L.3    Whitman, W.B.4
  • 34
    • 0001947363 scopus 로고    scopus 로고
    • Rhizosphere as a habitat for soil microorganisms
    • J. D. van Elsas, J. T. Trevors, and E. M. H. Wellington ed, Marcel Dekker, Inc. New York, NY
    • Sorensen, J. 1997. Rhizosphere as a habitat for soil microorganisms, p. 21-45. In J. D. van Elsas, J. T. Trevors, and E. M. H. Wellington (ed.), Modern soil microbiology. Marcel Dekker, Inc. New York, NY.
    • (1997) Modern soil microbiology , pp. 21-45
    • Sorensen, J.1
  • 35
    • 85057419013 scopus 로고    scopus 로고
    • The soil environment
    • J. D. van Elsas, J. K. Jansson. and J. T. Trevors ed, CRC Press, New York, NY
    • Standing, D., and K. Killham. 2007. The soil environment, p. 1-22. In J. D. van Elsas, J. K. Jansson. and J. T. Trevors (ed.). Modern soil microbiology. CRC Press, New York, NY.
    • (2007) Modern soil microbiology , pp. 1-22
    • Standing, D.1    Killham, K.2
  • 36
    • 0032874462 scopus 로고    scopus 로고
    • Poly(aspartic acid) degradation by a Sphingomonas sp. isolated from freshwater
    • Tabata, K., K.-I. Kasuya, H. Abe, K. Masuda, and Y. Doi. 1999. Poly(aspartic acid) degradation by a Sphingomonas sp. isolated from freshwater. Appl. Environ. Microbiol. 65:4268-4270.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 4268-4270
    • Tabata, K.1    Kasuya, K.-I.2    Abe, H.3    Masuda, K.4    Doi, Y.5
  • 37
    • 34547781750 scopus 로고    scopus 로고
    • Tamura, K, J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599
    • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
  • 38
    • 0036135280 scopus 로고    scopus 로고
    • Isolation and characterization of Novosphingobium sp. strain MT1. a dominant polychlorophenol-degrading strain in a groundwater bioremediation system
    • Tiirola, M. A., M. K. Mannisto, J. A. Puhakka, and M. S. Kulomaa. 2002. Isolation and characterization of Novosphingobium sp. strain MT1. a dominant polychlorophenol-degrading strain in a groundwater bioremediation system. Appl. Environ. Microbiol. 68:173-180.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 173-180
    • Tiirola, M.A.1    Mannisto, M.K.2    Puhakka, J.A.3    Kulomaa, M.S.4
  • 39
    • 0037052493 scopus 로고    scopus 로고
    • Prokaryotic diversity-magnitude, dynamics, and controlling factors
    • Torsvik, V., L. Ovreas, and T. F. Thingstad. 2002. Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296:1064-1066.
    • (2002) Science , vol.296 , pp. 1064-1066
    • Torsvik, V.1    Ovreas, L.2    Thingstad, T.F.3
  • 40
    • 34248217955 scopus 로고    scopus 로고
    • Effect of the mycorrhizosphere on the genotypic and metabolic diversity of the bacterial communities involved in mineral weathering in a forest soil
    • Uroz, S., C. Calvaruso, M. P. Turpault, J. C. Pierrat, C. Mustin, and P. Frey-Klett. 2007. Effect of the mycorrhizosphere on the genotypic and metabolic diversity of the bacterial communities involved in mineral weathering in a forest soil. Appl. Environ. Microbiol. 73:3019-3027.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 3019-3027
    • Uroz, S.1    Calvaruso, C.2    Turpault, M.P.3    Pierrat, J.C.4    Mustin, C.5    Frey-Klett, P.6
  • 41
    • 85057421370 scopus 로고    scopus 로고
    • The Bacteria and Archaea in soil
    • J. D. van Elsas, J. K. Jansson, and J. T. Trevors ed, CRC Press. New York, NY
    • van Elsas, J. D., Y. Torsvik, A. Hartmann, L. Ovreas, and J. K. Jansson. 2007. The Bacteria and Archaea in soil, p. 83-104. In J. D. van Elsas, J. K. Jansson, and J. T. Trevors (ed.), Modern soil microbiology. CRC Press. New York, NY.
    • (2007) Modern soil microbiology , pp. 83-104
    • van Elsas, J.D.1    Torsvik, Y.2    Hartmann, A.3    Ovreas, L.4    Jansson, J.K.5
  • 42
    • 10044270939 scopus 로고    scopus 로고
    • Interactive effect of Brevibacillus brevis and Glomus mosseae, both isolated from Cd contaminated soil, on plant growth, physiological mycorrhizal fungal characteristics and soil enzymatic activities in Cd polluted soil
    • Vivas, A., J. M. Barea, and R. Azcon. 2005. Interactive effect of Brevibacillus brevis and Glomus mosseae, both isolated from Cd contaminated soil, on plant growth, physiological mycorrhizal fungal characteristics and soil enzymatic activities in Cd polluted soil. Environ. Pollut. 134:257-266.
    • (2005) Environ. Pollut , vol.134 , pp. 257-266
    • Vivas, A.1    Barea, J.M.2    Azcon, R.3
  • 44
    • 58549085435 scopus 로고    scopus 로고
    • Universal and species-specific bacterial 'fungiphiles' in the mycospheres of different basidiomyce-tous fungi
    • Warmink, J. A., R. Nazir, and J. D. van Elsas. 2009. Universal and species-specific bacterial 'fungiphiles' in the mycospheres of different basidiomyce-tous fungi. Environ. Microbiol. 11:300-312.
    • (2009) Environ. Microbiol , vol.11 , pp. 300-312
    • Warmink, J.A.1    Nazir, R.2    van Elsas, J.D.3


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