-
1
-
-
33644870781
-
Prediction of membrane proteins in mycobacterium tuberculosis using a support vector machine algorithm
-
DOI 10.1089/cmb.2006.13.126
-
JI Yeh L Mao 2006 Prediction of membrane proteins in Mycobacterium tuberculosis using a support vector machine algorithm J Comput Biol 13 126 129 10.1089cmb.2006.13.126 1:CAS:528:DC%2BD28XhtlSqs7c%3D 10.1089/cmb.2006.13.126 16472026 (Pubitemid 43376494)
-
(2006)
Journal of Computational Biology
, vol.13
, Issue.1
, pp. 126-129
-
-
Yeh, J.I.1
Mao, L.2
-
2
-
-
34548606295
-
Recent progress in protein subcellular location prediction
-
DOI 10.1016/j.ab.2007.07.006, PII S0003269707004423
-
KC Chou HB Shen 2007 Review: recent progresses in protein subcellular location prediction Anal Biochem 370 1 16 10.1016/j.ab.2007.07.006 1:CAS:528:DC%2BD2sXhtVOmur%2FF 10.1016/j.ab.2007.07.006 17698024 (Pubitemid 47404494)
-
(2007)
Analytical Biochemistry
, vol.370
, Issue.1
, pp. 1-16
-
-
Chou, K.-C.1
Shen, H.-B.2
-
3
-
-
39449105071
-
Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms
-
DOI 10.1038/nprot.2007.494, PII NPROT.2007.494
-
KC Chou HB Shen 2008 Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms Nat Protoc 3 153 162 10.1038/nprot.2007.494 1:CAS:528:DC%2BD1cXhvVylsrs%3D 10.1038/nprot.2007.494 18274516 (Pubitemid 351266500)
-
(2008)
Nature Protocols
, vol.3
, Issue.2
, pp. 153-162
-
-
Chou, K.-C.1
Shen, H.-B.2
-
4
-
-
33847668306
-
Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
-
DOI 10.1016/j.bbrc.2007.02.071, PII S0006291X07003452
-
HB Shen KC Chou 2007 Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites Biochem Biophys Res Commun 355 1006 1011 10.1016/j.bbrc.2007.02. 071 1:CAS:528:DC%2BD2sXivVahur0%3D 10.1016/j.bbrc.2007.02.071 17346678 (Pubitemid 46366927)
-
(2007)
Biochemical and Biophysical Research Communications
, vol.355
, Issue.4
, pp. 1006-1011
-
-
Shen, H.-B.1
Chou, K.-C.2
-
5
-
-
33847080827
-
Gpos-Ploc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
-
10.1093/protein/gzl053 1:CAS:528:DC%2BD2sXhvFWmtr8%3D 10.1093/protein/gzl053 17244638
-
HB Shen KC Chou 2007 Gpos-Ploc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins Protein Eng Des Sel 20 39 46 10.1093/protein/gzl053 1:CAS:528:DC%2BD2sXhvFWmtr8%3D 10.1093/protein/gzl053 17244638
-
(2007)
Protein Eng des Sel
, vol.20
, pp. 39-46
-
-
Shen, H.B.1
Chou, K.C.2
-
6
-
-
33847260136
-
Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
-
10.1002/bip.20640 1:CAS:528:DC%2BD2sXhvFWhs70%3D 10.1002/bip.20640 17120237
-
HB Shen KC Chou 2007 Virus-PLoc: a fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells Biopolymers 85 233 240 10.1002/bip.20640 1:CAS:528:DC%2BD2sXhvFWhs70%3D 10.1002/bip.20640 17120237
-
(2007)
Biopolymers
, vol.85
, pp. 233-240
-
-
Shen, H.B.1
Chou, K.C.2
-
7
-
-
33847637338
-
Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction
-
DOI 10.1007/s00726-006-0478-8
-
HB Shen J Yang KC Chou 2007 Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction Amino Acids 33 57 61 10.1007/s00726-006-0478-8 1:CAS:528:DC%2BD2sXotVWru7Y%3D 10.1007/s00726-006-0478-8 17235453 (Pubitemid 47101466)
-
(2007)
Amino Acids
, vol.33
, Issue.1
, pp. 57-67
-
-
Shen, H.-B.1
Yang, J.2
Chou, K.-C.3
-
8
-
-
70349897637
-
Using the nonlinear dimensionality reduction method for the prediction of subcellular localization of Gram-negative bacterial proteins
-
doi: 10.1007/s11030-009-9134-z
-
Wang T, Yang J (2009) Using the nonlinear dimensionality reduction method for the prediction of subcellular localization of Gram-negative bacterial proteins. Mol Divers. doi: 10.1007/s11030-009-9134-z
-
(2009)
Mol Divers
-
-
Wang, T.1
Yang, J.2
-
9
-
-
46049083380
-
Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins
-
10.1007/s11030-008-9073-0 1:CAS:528:DC%2BD1cXnsFeiurc%3D 10.1007/s11030-008-9073-0 18506593
-
B Niu YH Jian KY Feng WC Lu YD Cai GZ Li 2008 Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins Mol Divers 12 41 45 10.1007/s11030-008-9073-0 1:CAS:528:DC%2BD1cXnsFeiurc%3D 10.1007/s11030-008-9073-0 18506593
-
(2008)
Mol Divers
, vol.12
, pp. 41-45
-
-
Niu, B.1
Jian, Y.H.2
Feng, K.Y.3
Lu, W.C.4
Cai, Y.D.5
Li, G.Z.6
-
10
-
-
0344081940
-
Artificial neural networks for prediction of mycobacterial promoter sequences
-
10.1016/j.compbiolchem.2003.09.004 1:CAS:528:DC%2BD3sXpvVWjsr0%3D 10.1016/j.compbiolchem.2003.09.004 14667783
-
RN Kalate SS Tambe BD Kulkarni 2003 Artificial neural networks for prediction of mycobacterial promoter sequences Comput Biol Chem 27 555 564 10.1016/j.compbiolchem.2003.09.004 1:CAS:528:DC%2BD3sXpvVWjsr0%3D 10.1016/j.compbiolchem.2003.09.004 14667783
-
(2003)
Comput Biol Chem
, vol.27
, pp. 555-564
-
-
Kalate, R.N.1
Tambe, S.S.2
Kulkarni, B.D.3
-
12
-
-
33645291006
-
Stochastic molecular descriptors for polymers. 3. Markov electrostatic moments as polymer 2D-folding descriptors: RNA-QSAR for mycobacterial promoters
-
DOI 10.1016/j.polymer.2005.04.104, PII S0032386105006373
-
H González-Díaz A Pérez-Bello E Uriarte 2005 Stochastic molecular descriptors for polymers. 3. Markov electrostatic moments as polymer 2D-folding descriptors: RNA-QSAR for mycobacterial promoters Polymer 46 6461 6473 10.1016/j.polymer.2005.04.104 10.1016/j.polymer.2005.04.104 (Pubitemid 41021703)
-
(2005)
Polymer
, vol.46
, Issue.17
, pp. 6461-6473
-
-
Gonzalez-Diaz, H.1
Perez-Bello, A.2
Uriarte, E.3
-
13
-
-
33845662803
-
Chemometrics for QSAR with low sequence homology: Mycobacterial promoter sequences recognition with 2D-RNA entropies
-
DOI 10.1016/j.chemolab.2006.03.005, PII S0169743906000645
-
H González-Díaz A Pérez-Bello M Cruz-Monteagudo Y González-Díaz L Santana E Uriarte 2007 Chemometrics for QSAR with low sequence homology: mycobacterial promoter sequences recognition with 2D-RNA entropies Chemom Intell Lab Syst 85 20 26 10.1016/j.chemolab.2006.03.005 10.1016/j.chemolab.2006.03.005 (Pubitemid 44940770)
-
(2007)
Chemometrics and Intelligent Laboratory Systems
, vol.85
, Issue.1
, pp. 20-26
-
-
Gonzalez-Diaz, H.1
Perez-Bello, A.2
Cruz-Monteagudo, M.3
Gonzalez-Diaz, Y.4
Santana, L.5
Uriarte, E.6
-
14
-
-
58149187912
-
Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices
-
10.1016/j.jtbi.2008.09.035 1:CAS:528:DC%2BD1MXjvFyhuw%3D%3D 10.1016/j.jtbi.2008.09.035 18992259
-
A Perez-Bello CR Munteanu FM Ubeira AL De Magalhães E Uriarte H González-Díaz 2009 Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices J Theor Biol 256 458 466 10.1016/j.jtbi.2008.09.035 1:CAS:528: DC%2BD1MXjvFyhuw%3D%3D 10.1016/j.jtbi.2008.09.035 18992259
-
(2009)
J Theor Biol
, vol.256
, pp. 458-466
-
-
Perez-Bello, A.1
Munteanu, C.R.2
Ubeira, F.M.3
De Magalhães, A.L.4
Uriarte, E.5
González-Díaz, H.6
-
15
-
-
59149084486
-
Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach
-
10.2174/156802608786786543 10.2174/156802608786786543 19075774
-
H González-Díaz F Prado-Prado FM Ubeira 2008 Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach Curr Top Med Chem 8 1676 1690 10.2174/156802608786786543 10.2174/156802608786786543 19075774
-
(2008)
Curr Top Med Chem
, vol.8
, pp. 1676-1690
-
-
González-Díaz, H.1
Prado-Prado, F.2
Ubeira, F.M.3
-
16
-
-
40549136471
-
Proteomics, networks and connectivity indices
-
DOI 10.1002/pmic.200700638
-
H González-Díaz Y González-Díaz L Santana FM Ubeira E Uriarte 2008 Proteomics, networks and connectivity indices Proteomics 8 750 778 10.1002/pmic.200700638 10.1002/pmic.200700638 18297652 (Pubitemid 351362934)
-
(2008)
Proteomics
, vol.8
, Issue.4
, pp. 750-778
-
-
Gonzalez-Diaz, H.1
Gonzalez-Diaz, Y.2
Santana, L.3
Ubeira, F.M.4
Uriarte, E.5
-
17
-
-
37249058502
-
Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs
-
DOI 10.1186/1471-2105-8-337
-
M Rashid S Saha GPS Raghava 2007 Support vector machine-based method for predicting subcellular localization of mycobacterial proteins using evolutional information and motifs BMC Bioinformatics 8 337 10.1186/1471-2105-8-337 10.1186/1471-2105-8-337 17854501 (Pubitemid 350278741)
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 337
-
-
Rashid, M.1
Saha, S.2
Raghava, G.P.S.3
-
18
-
-
0036891705
-
Sequence conserved for subcellular localization
-
DOI 10.1110/ps.0207402
-
R Nair B Rost 2002 Sequence conserved for subcellular localization Protein Sci 11 2836 2847 10.1110/ps.0207402 1:CAS:528:DC%2BD38XptVelu7c%3D 10.1110/ps.0207402 12441382 (Pubitemid 35365250)
-
(2002)
Protein Science
, vol.11
, Issue.12
, pp. 2836-2847
-
-
Nair, R.1
Rost, B.2
-
20
-
-
49449087313
-
Predicting subcellular localization of Mycobacterial proteins by using Chou's pseudo amino acid composition
-
10.2174/092986608785133681 1:CAS:528:DC%2BD1cXnsVygu7o%3D 10.2174/092986608785133681 18782071
-
H Lin H Ding FB Guo AY Zhang J Huang 2008 Predicting subcellular localization of Mycobacterial proteins by using Chou's pseudo amino acid composition Protein Pept Lett 15 739 744 10.2174/092986608785133681 1:CAS:528:DC%2BD1cXnsVygu7o%3D 10.2174/092986608785133681 18782071
-
(2008)
Protein Pept Lett
, vol.15
, pp. 739-744
-
-
Lin, H.1
Ding, H.2
Guo, F.B.3
Zhang, A.Y.4
Huang, J.5
-
21
-
-
28444448722
-
Discrimination of outer membrane proteins using support vector machines
-
DOI 10.1093/bioinformatics/bti697
-
KJ Park MM Gromiha P Horton M Suwa 2005 Discrimination of outer membrane proteins using support vector machines Bioinformatics 21 4223 4229 10.1093/bioinformatics/bti697 1:CAS:528:DC%2BD2MXht1Gltr7L 10.1093/ bioinformatics/bti697 16204348 (Pubitemid 41724301)
-
(2005)
Bioinformatics
, vol.21
, Issue.23
, pp. 4223-4229
-
-
Park, K.-J.1
Gromiha, M.M.2
Horton, P.3
Suwa, M.4
-
22
-
-
33947390931
-
Prediction of the subcellular location of apoptosis proteins
-
DOI 10.1016/j.jtbi.2006.11.010, PII S0022519306005522
-
YL Chen QZ Li 2007 Prediction of the subcellular location of apoptosis proteins J Theor Biol 245 775 783 10.1016/j.jtbi.2006.11.010 1:CAS:528:DC%2BD2sXjsVCjsLw%3D 10.1016/j.jtbi.2006.11.010 17189644 (Pubitemid 46452663)
-
(2007)
Journal of Theoretical Biology
, vol.245
, Issue.4
, pp. 775-783
-
-
Chen, Y.-L.1
Li, Q.-Z.2
-
23
-
-
34548009150
-
Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo-amino acid composition
-
DOI 10.1016/j.jtbi.2007.05.019, PII S0022519307002500
-
YL Chen QZ Li 2007 Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo-amino acid composition J Theor Biol 248 377 381 10.1016/j.jtbi.2007.05.019 1:CAS:528:DC%2BD2sXpsFWrsbs%3D 10.1016/j.jtbi.2007.05.019 17572445 (Pubitemid 47284174)
-
(2007)
Journal of Theoretical Biology
, vol.248
, Issue.2
, pp. 377-381
-
-
Chen, Y.-L.1
Li, Q.-Z.2
-
24
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
10.1006/jmbi.2000.3903 1:CAS:528:DC%2BD3cXks1OntrY%3D 10.1006/jmbi.2000.3903 10891285
-
O Emanuelsson H Nielsen S Brunak G Heijine 2000 Predicting subcellular localization of proteins based on their N-terminal amino acid sequence J Mol Biol 300 1005 1016 10.1006/jmbi.2000.3903 1:CAS:528:DC%2BD3cXks1OntrY%3D 10.1006/jmbi.2000.3903 10891285
-
(2000)
J Mol Biol
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Heijine, G.4
-
25
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
DOI 10.1093/bioinformatics/btl158
-
W Li A Godzik 2006 Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences Bioinformatics 22 1658 1659 10.1093/bioinformatics/btl158 1:CAS:528:DC%2BD28XmsVent7s%3D 10.1093/bioinformatics/btl158 16731699 (Pubitemid 43985301)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
26
-
-
10044235999
-
LIBSVM: A library for support vector machines
-
Chang CC, Lin CJ (2001) LIBSVM: a library for support vector machines. Software available at http://www.csie.ntu.edu.tw/-cjlin/libsvm
-
(2001)
Software
-
-
Chang, C.C.1
Lin, C.J.2
-
27
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo-amino acid composition
-
DOI 10.1002/prot.1035
-
KC Chou 2001 Prediction of protein cellular attributes using pseudo amino acid composition Proteins 43 246 255 10.1002/prot.1035 1:CAS:528: DC%2BD3MXjtFOls74%3D 10.1002/prot.1035 11288174 (Pubitemid 32367799)
-
(2001)
Proteins: Structure, Function and Genetics
, vol.43
, Issue.3
, pp. 246-255
-
-
Chou, K.-C.1
-
28
-
-
37549004451
-
PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition
-
10.1016/j.ab.2007.10.012 1:CAS:528:DC%2BD1cXivVGqsw%3D%3D 10.1016/j.ab.2007.10.012 17976365
-
HB Shen KC Chou 2008 PseAAC: a flexible web server for generating various kinds of protein pseudo amino acid composition Anal Biochem 373 386 388 10.1016/j.ab.2007.10.012 1:CAS:528:DC%2BD1cXivVGqsw%3D%3D 10.1016/j.ab.2007.10. 012 17976365
-
(2008)
Anal Biochem
, vol.373
, pp. 386-388
-
-
Shen, H.B.1
Chou, K.C.2
-
29
-
-
0031566432
-
Recognition of analogous and homologous protein folds: Analysis of sequence and structure conservation
-
DOI 10.1006/jmbi.1997.1019
-
RB Russell MA Saqi RA Sayle PA Bates MJ Sternberg 1997 Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation J Mol Biol 269 423 439 10.1006/jmbi.1997.1019 1:CAS:528: DyaK2sXktF2isL4%3D 10.1006/jmbi.1997.1019 9199410 (Pubitemid 27267763)
-
(1997)
Journal of Molecular Biology
, vol.269
, Issue.3
, pp. 423-439
-
-
Russell, R.B.1
Saqi, M.A.S.2
Sayle, R.A.3
Bates, P.A.4
Sternberg, M.J.E.5
-
30
-
-
13944250295
-
A new method for identification of protein (sub)families in a set of proteins based on hydropathy distribution in proteins
-
DOI 10.1002/prot.20356
-
J Pánek I Eidhammer R Aasland 2005 A new method for identification of protein (Sub)families in a set of proteins based on hydropathy distribution in proteins Proteins 58 923 934 10.1002/prot.20356 10.1002/prot.20356 15645428 (Pubitemid 40271257)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.58
, Issue.4
, pp. 923-934
-
-
Panek, J.1
Eidhammer, I.2
Aasland, R.3
-
31
-
-
31444455638
-
Novel 2D maps and coupling numbers for protein sequences. The first QSAR study of polygalacturonases; isolation and prediction of a novel sequence from Psidium guajava L.
-
DOI 10.1016/j.febslet.2005.12.072, PII S0014579305015590
-
G Agüero-Chapin H González-Díaz R Molina J Varona-Santos E Uriarte Y González-Díaz 2006 Novel 2D maps and coupling numbers for protein sequences. The first QSAR study of polygalacturonases; isolation and prediction of a novel sequence from Psidium guajava L FEBS Lett 580 723 730 10.1016/j.febslet.2005.12.072 10.1016/j.febslet.2005.12.072 16413021 (Pubitemid 43152288)
-
(2006)
FEBS Letters
, vol.580
, Issue.3
, pp. 723-730
-
-
Aguero-Chapin, G.1
Gonzalez-Diaz, H.2
Molina, R.3
Varona-Santos, J.4
Uriarte, E.5
Gonzalez-Diaz, Y.6
-
32
-
-
0029157083
-
Review: Prediction of protein structural classes
-
10.3109/10409239509083488 1:CAS:528:DyaK2MXosFentb8%3D 10.3109/10409239509083488 7587280
-
KC Chou CT Zhang 1995 Review: prediction of protein structural classes Crit Rev Biochem Mol Biol 30 275 349 10.3109/10409239509083488 1:CAS:528:DyaK2MXosFentb8%3D 10.3109/10409239509083488 7587280
-
(1995)
Crit Rev Biochem Mol Biol
, vol.30
, pp. 275-349
-
-
Chou, K.C.1
Zhang, C.T.2
-
33
-
-
0033554601
-
A key driving force in determination of protein structural classes
-
DOI 10.1006/bbrc.1999.1325
-
KC Chou 1999 A key driving force in determination of protein structural classes Biochem Biophys Res Commun 264 216 224 10.1006/bbrc.1999.1325 1:CAS:528:DyaK1MXms1ynt70%3D 10.1006/bbrc.1999.1325 10527868 (Pubitemid 29500491)
-
(1999)
Biochemical and Biophysical Research Communications
, vol.264
, Issue.1
, pp. 216-224
-
-
Chou, K.-C.1
|