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Volumn 104, Issue 1, 2010, Pages 20-27

Standard machine learning algorithms applied to UPLC-TOF/MS metabolic fingerprinting for the discovery of wound biomarkers in Arabidopsis thaliana

Author keywords

Arabidopsis thaliana; Data mining; Machine learning; Mass spectrometry; Metabolomics; UPLC MS

Indexed keywords

BIOLOGICAL MARKER;

EID: 78650173485     PISSN: 01697439     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemolab.2010.03.003     Document Type: Article
Times cited : (29)

References (30)
  • 1
    • 0345270397 scopus 로고    scopus 로고
    • Plant metabolomics: large-scale phytochemistry in the functional genomics era
    • Sumner L.W., Mendes P., Dixon R.A. Plant metabolomics: large-scale phytochemistry in the functional genomics era. Phytochemistry 2003, 62:817.
    • (2003) Phytochemistry , vol.62 , pp. 817
    • Sumner, L.W.1    Mendes, P.2    Dixon, R.A.3
  • 2
    • 33645070537 scopus 로고    scopus 로고
    • Plant metabolomics: from holistic hope, to hype, to hot topic
    • Hall R.D. Plant metabolomics: from holistic hope, to hype, to hot topic. New Phytol. 2005, 169:453.
    • (2005) New Phytol. , vol.169 , pp. 453
    • Hall, R.D.1
  • 4
    • 27344453869 scopus 로고    scopus 로고
    • Metabolomics: from pattern recognition to biological interpretation
    • Weckwerth W., Morgenthal K. Metabolomics: from pattern recognition to biological interpretation. Drug Discov. Today 2005, 10:1551.
    • (2005) Drug Discov. Today , vol.10 , pp. 1551
    • Weckwerth, W.1    Morgenthal, K.2
  • 7
    • 67649385775 scopus 로고    scopus 로고
    • Metabolite profiling of plant extracts by ultra-high-pressure liquid chromatography at elevated temperature coupled to time-of-flight mass spectrometry
    • Grata E., Guillarme D., Glauser G., Boccard J., Carrupt P.A., Veuthey J.L., Rudaz S., Wolfender J.L. Metabolite profiling of plant extracts by ultra-high-pressure liquid chromatography at elevated temperature coupled to time-of-flight mass spectrometry. J. Chromatogr. A 2009, 1216:5660.
    • (2009) J. Chromatogr. A , vol.1216 , pp. 5660
    • Grata, E.1    Guillarme, D.2    Glauser, G.3    Boccard, J.4    Carrupt, P.A.5    Veuthey, J.L.6    Rudaz, S.7    Wolfender, J.L.8
  • 8
    • 34848899790 scopus 로고    scopus 로고
    • Development of a two-step screening ESI-TOF-MS method for rapid determination of significant stress-induced metabolone modifications in plant leaf extracts: the wound response in Arabidopsis thaliana as a case study
    • Grata E., Boccard J., Glauser G., Carrupt P.A., Farmer E.E., Wolfender J.L., Rudaz S. Development of a two-step screening ESI-TOF-MS method for rapid determination of significant stress-induced metabolone modifications in plant leaf extracts: the wound response in Arabidopsis thaliana as a case study. J. Sep. Sci. 2007, 30:2268.
    • (2007) J. Sep. Sci. , vol.30 , pp. 2268
    • Grata, E.1    Boccard, J.2    Glauser, G.3    Carrupt, P.A.4    Farmer, E.E.5    Wolfender, J.L.6    Rudaz, S.7
  • 11
    • 0029678894 scopus 로고    scopus 로고
    • Improved use of continuous attributes in C4.5
    • Quinlan J.R. Improved use of continuous attributes in C4.5. J. Artif. Intell. Res. 1996, 4:77.
    • (1996) J. Artif. Intell. Res. , vol.4 , pp. 77
    • Quinlan, J.R.1
  • 12
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman L. Random forests. Mach. Learn. 2001, 45:5.
    • (2001) Mach. Learn. , vol.45 , pp. 5
    • Breiman, L.1
  • 14
    • 0036163654 scopus 로고    scopus 로고
    • Convergence of a generalized SMO algorithm for SVM classifier design
    • Keerthi S.S., Gilbert E.G. Convergence of a generalized SMO algorithm for SVM classifier design. Mach. Learn. 2002, 46:351.
    • (2002) Mach. Learn. , vol.46 , pp. 351
    • Keerthi, S.S.1    Gilbert, E.G.2
  • 15
    • 0005644468 scopus 로고    scopus 로고
    • How to implement SVMs
    • Platt J. How to implement SVMs. Ieee Intell. Syst. 1998, 13:26.
    • (1998) Ieee Intell. Syst. , vol.13 , pp. 26
    • Platt, J.1
  • 16
    • 0032594959 scopus 로고    scopus 로고
    • An overview of statistical learning theory
    • Vapnik V.N. An overview of statistical learning theory. Ieee Trans. Neural Netw. 1999, 10:988.
    • (1999) Ieee Trans. Neural Netw. , vol.10 , pp. 988
    • Vapnik, V.N.1
  • 17
    • 0025449027 scopus 로고
    • Perceptron-based learning algorithms
    • Gallant S.I. Perceptron-based learning algorithms. Ieee Trans. Neural Netw. 1990, 1:179.
    • (1990) Ieee Trans. Neural Netw. , vol.1 , pp. 179
    • Gallant, S.I.1
  • 18
    • 0025490985 scopus 로고
    • Networks for approximation and learning
    • Poggio T., Girosi F. Networks for approximation and learning. Proceedings of the Ieee 1990, 78:1481.
    • (1990) Proceedings of the Ieee , vol.78 , pp. 1481
    • Poggio, T.1    Girosi, F.2
  • 19
    • 0035528674 scopus 로고    scopus 로고
    • Idiot's Bayes - Not so stupid after all?
    • Hand D.J., Yu K.M. Idiot's Bayes - Not so stupid after all?. Int. Stat. Rev. 2001, 69:385.
    • (2001) Int. Stat. Rev. , vol.69 , pp. 385
    • Hand, D.J.1    Yu, K.M.2
  • 20
    • 0004255908 scopus 로고    scopus 로고
    • McGraw Hill Higher Education, New York
    • Mitchell T.M. Machine Learning 1997, McGraw Hill Higher Education, New York.
    • (1997) Machine Learning
    • Mitchell, T.M.1
  • 21
    • 0031381525 scopus 로고    scopus 로고
    • Wrappers for feature subset selection
    • Kohavi R., John G.H. Wrappers for feature subset selection. Artif. Intell. 1997, 97:273.
    • (1997) Artif. Intell. , vol.97 , pp. 273
    • Kohavi, R.1    John, G.H.2
  • 22
    • 0141990695 scopus 로고    scopus 로고
    • Theoretical and empirical analysis of ReliefF and RReliefF
    • Robnik-Sikonja M., Kononenko I. Theoretical and empirical analysis of ReliefF and RReliefF. Mach. Learn. 2003, 53:23.
    • (2003) Mach. Learn. , vol.53 , pp. 23
    • Robnik-Sikonja, M.1    Kononenko, I.2
  • 23
    • 44149084366 scopus 로고
    • An application of information theory to multivariate analysis
    • Kullback S. An application of information theory to multivariate analysis. Ann. Math. Stat. 1952, 23:88.
    • (1952) Ann. Math. Stat. , vol.23 , pp. 88
    • Kullback, S.1
  • 24
    • 85065703189 scopus 로고    scopus 로고
    • Correlation-based Feature Selection for Discrete and Numeric Class Machine Learning
    • Morgan Kaufmann Publishers Inc
    • Hall M.A. Correlation-based Feature Selection for Discrete and Numeric Class Machine Learning. Proceedings of the Seventeenth International Conference on Machine Learning 2000, 359. Morgan Kaufmann Publishers Inc.
    • (2000) Proceedings of the Seventeenth International Conference on Machine Learning , pp. 359
    • Hall, M.A.1
  • 25
    • 3343019470 scopus 로고
    • Measuring nominal scale agreement among many raters
    • Fleiss J.L. Measuring nominal scale agreement among many raters. Psychol. Bull. 1971, 76:378.
    • (1971) Psychol. Bull. , vol.76 , pp. 378
    • Fleiss, J.L.1
  • 26
    • 0042847140 scopus 로고    scopus 로고
    • Inference for the generalization error
    • Nadeau C., Bengio Y. Inference for the generalization error. Mach. Learn. 2003, 52:239.
    • (2003) Mach. Learn. , vol.52 , pp. 239
    • Nadeau, C.1    Bengio, Y.2
  • 27
    • 0001710505 scopus 로고
    • Analysis of a complex of statistical variables into principal components
    • Hotelling H. Analysis of a complex of statistical variables into principal components. J. Educ. Psychol. 1933, 24:417.
    • (1933) J. Educ. Psychol. , vol.24 , pp. 417
    • Hotelling, H.1
  • 28
    • 34248647608 scopus 로고    scopus 로고
    • Stability of feature selection algorithms: a study on high dimensional spaces
    • Kalousis A., Prados J., Hilario M. Stability of feature selection algorithms: a study on high dimensional spaces. Knowl. Inf. Syst. 2007, 12:95.
    • (2007) Knowl. Inf. Syst. , vol.12 , pp. 95
    • Kalousis, A.1    Prados, J.2    Hilario, M.3
  • 29
    • 0041569777 scopus 로고    scopus 로고
    • Jasmonates and related oxylipins in plant responses to pathogenesis and herbivory
    • Farmer E.E., Almeras E., Krishnamurthy V. Jasmonates and related oxylipins in plant responses to pathogenesis and herbivory. Curr. Opin. Plant Biol. 2003, 6:372.
    • (2003) Curr. Opin. Plant Biol. , vol.6 , pp. 372
    • Farmer, E.E.1    Almeras, E.2    Krishnamurthy, V.3
  • 30
    • 73349139514 scopus 로고    scopus 로고
    • Mass spectrometry-based metabolomics oriented by correlation analysis for wound-induced molecule discovery: identification of a novel jasmonate glucoside
    • Glauser G., Boccard J., Rudaz S., Wolfender J.-L. Mass spectrometry-based metabolomics oriented by correlation analysis for wound-induced molecule discovery: identification of a novel jasmonate glucoside. Phytochem. Anal. 2010, 21:95.
    • (2010) Phytochem. Anal. , vol.21 , pp. 95
    • Glauser, G.1    Boccard, J.2    Rudaz, S.3    Wolfender, J.-L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.