Bifidobacterium stercoris sp. nov., isolated from human faeces

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 12, 2010, Pages 2823-2827

  Kim, Min Soo ^a   Roh, Seong Woon ^a   Bae, Jin Woo ^a  

^a Kyung Hee University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ACID; CATALASE; GLUCOSE; LACTIC ACID; OXIDOREDUCTASE; RNA 16S; BACTERIAL DNA; CHAPERONIN 60; FATTY ACID; FRUCTOSE-6-PHOSPHATE PHOSPHOKETOLASE; LYASE;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIFIDOBACTERIUM; BIFIDOBACTERIUM STERCORIS; ENZYME ACTIVITY; FECES; FERMENTATION; GENE SEQUENCE; GENOTYPE; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; TEMPERATURE; ADULT; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MALE; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION;

BACTERIA (MICROORGANISMS); BIFIDOBACTERIUM; BIFIDOBACTERIUM ADOLESCENTIS; BIFIDOBACTERIUM RUMINANTIUM;

ADULT; ALDEHYDE-LYASES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BIFIDOBACTERIUM; CHAPERONIN 60; DNA, BACTERIAL; FATTY ACIDS; FECES; HUMANS; MALE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 78650067453     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.019943-0     Document Type: Article

References (23)

1. Baker, G. C., Smith, J. J. & Cowan, D. A. (2003). Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55, 541-555.
2. Biavati, B. & Mattarelli, P. (1991). Bifidobacterium ruminantium sp. nov. and Bifidobacterium merycicum sp. nov. from the rumens of cattle. Int J Syst Bacteriol 41, 163-168.
3. Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E. & Relman, D. A. (2005). Diversity of the human intestinal microbial flora. Science 308, 1635-1638.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229. (Pubitemid 19175038)
5. Gavini, F., Pourcher, A. M., Neut, C., Monget, D., Romond, C., Oger, C. & Izard, D. (1991). Phenotypic differentiation of bifidobacteria of human and animal origins. Int J Syst Bacteriol 41, 548-557.
6. Gibson, G. R. & Roberfroid, M. B. (1995). Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics. J Nutr 125, 1401-1412.
7. Gonzalez, J. M. & Saiz-Jimenez, C. (2002). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4, 770-773.
8. Hirayama, H., Tamaoka, J. & Horikoshi, K. (1996). Improved immobilization of DNA to microwell plates for DNA-DNA hybridization. Nucleic Acids Res 24, 4098-4099.
9. Jian, W., Zhu, L. & Dong, X. (2001). New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequences. Int J Syst Evol Microbiol 51, 1633-1638.
10. Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
11. Okamoto, M., Benno, Y., Leung, K. P. & Maeda, N. (2008). Bifidobacterium tsurumiense sp. nov., from hamster dental plaque. Int J Syst Evol Microbiol 58, 144-148. (Pubitemid 351843555)
12. Orban, J. I. & Patterson, J. A. (2000). Modification of the phosphoketolase assay for rapid identification of bifidobacteria. J Microbiol Methods 40, 221-224.
13. Palmer, C., Bik, E. M., DiGiulio, D. B., Relman, D. A. & Brown, P. O. (2007). Development of the human infant intestinal microbiota. PLoS Biol 5, e177.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Saulnier, D. M., Spinler, J. K., Gibson, G. R. & Versalovic, J. (2009). Mechanisms of probiosis and prebiosis: considerations for enhanced functional foods. Curr Opin Biotechnol 20, 135-141.
16. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1418-1434. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
17. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
18. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
19. Turroni, F., Marchesi, J. R., Foroni, E., Gueimonde, M., Shanahan, F., Margolles, A., van Sinderen, D. & Ventura, M. (2009). Microbiomic analysis of the bifidobacterial population in the human distal gut. ISME J 3, 745-751.
20. Ventura, M., Canchaya, C., Tauch, A., Chandra, G., Fitzgerald, G. F., Chater, K. F. & van Sinderen, D. (2007). Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev 71, 495-548.
21. Wang, M., Ahrne, S., Jeppsson, B. & Molin, G. (2005). Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes. FEMS Microbiol Ecol 54, 219-231. (Pubitemid 41317922)
22. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
23. Zhu, L., Li, W. & Dong, X. (2003). Species identification of genus Bifidobacterium based on partial HSP60 gene sequences and proposal of Bifidobacterium thermacidophilum subsp. porcinum subsp. nov. Int J Syst Evol Microbiol 53, 1619-1623.