메뉴 건너뛰기




Volumn 60, Issue 12, 2010, Pages 2745-2752

Archaeoglobus sulfaticallidus sp. nov., a thermophilic and facultatively lithoautotrophic sulfate-reducer isolated from black rust exposed to hot ridge flank crustal fluids

Author keywords

[No Author keywords available]

Indexed keywords

CARBON DIOXIDE; GENOMIC DNA; HYDROGEN; LACTIC ACID; PYRUVIC ACID; RNA 16S; SODIUM CHLORATE; SULFATE; SULFITE; THIOSULFATE; ARCHAEAL DNA; SEA WATER;

EID: 78650052092     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.016105-0     Document Type: Article
Times cited : (50)

References (44)
  • 3
    • 0025274687 scopus 로고
    • Archaeoglobus profundus sp. nov., represents a new species within the sulfate-reducing archaebacteria
    • Burggraf, S., Jannasch, H. W., Nicolaus, B. & Stetter, K. O. (1990). Archaeoglobus profundus sp. nov., represents a new species within the sulfur-reducing Archaebacteria. Syst Appl Microbiol 13, 24-28. (Pubitemid 20089758)
    • (1990) Systematic and Applied Microbiology , vol.13 , Issue.1 , pp. 24-28
    • Burggraf, S.1    Jannasch, H.W.2    Nicolaus, B.3    Stetter, K.O.4
  • 4
    • 0347823003 scopus 로고    scopus 로고
    • MatGAT: An application that generates similarity/identity matrices using protein or DNA sequences
    • Campanella, J. J., Bitincka, L. & Smalley, J. (2003). MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences. BMC Bioinformatics 4, 29-32.
    • (2003) BMC Bioinformatics , vol.4 , pp. 29-32
    • Campanella, J.J.1    Bitincka, L.2    Smalley, J.3
  • 5
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17, 540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 7
    • 0021836170 scopus 로고
    • A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria
    • Cord-Ruwisch, R. (1985). A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods 4, 33-36.
    • (1985) J Microbiol Methods , vol.4 , pp. 33-36
    • Cord-Ruwisch, R.1
  • 10
    • 0024444791 scopus 로고
    • Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
    • Edwards, U., Rogall, T., Blöcker, H., Emde, M. & Böttger, E. C. (1989). Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17, 7843-7853.
    • (1989) Nucleic Acids Res , vol.17 , pp. 7843-7853
    • Edwards, U.1    Rogall, T.2    Blöcker, H.3    Emde, M.4    Böttger, E.C.5
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 12
    • 71849086275 scopus 로고    scopus 로고
    • Expedition 301 Scientists College Station TX: Integrated Ocean Drilling Program Management International, Inc. doi:10.2204/iodp.proc.301.2005
    • Fisher, A. T., Urabe, T., Klaus, A. & Expedition 301 Scientists (2005). Proceedings of the Integrated Ocean Drilling Program, vol. 301. College Station TX: Integrated Ocean Drilling Program Management International, Inc. doi:10.2204/iodp.proc.301.2005
    • (2005) Proceedings of the Integrated Ocean Drilling Program , vol.301
    • Fisher, A.T.1    Urabe, T.2    Klaus, A.3
  • 13
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 15
    • 71249129835 scopus 로고    scopus 로고
    • The genus Archaeoglobus
    • 3rd edn, Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer
    • Hartzell, P. & Reed, D. W. (2006). The genus Archaeoglobus. In The Prokaryotes, 3rd edn, vol. 3, pp. 82-100. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
    • (2006) The Prokaryotes , vol.3 , pp. 82-100
    • Hartzell, P.1    Reed, D.W.2
  • 16
    • 0030765128 scopus 로고    scopus 로고
    • Archaeoglobus veneficus sp. nov., a novel facultative chemolithoautotrophic hyperthermophilic sulfite reducer, isolated from abyssal black smokers
    • Huber, H., Jannasch, H., Rachel, R., Fuchs, T. & Stetter, K. O. (1997). Archaeoglobus veneficus sp. nov., a novel facultative chemolithoautotrophic hyperthermophilic sulfite reducer, isolated from abyssal black smokers. Syst Appl Microbiol 20, 374-380. (Pubitemid 27374679)
    • (1997) Systematic and Applied Microbiology , vol.20 , Issue.3 , pp. 374-380
    • Huber, H.1    Jannasch, H.2    Rachel, R.3    Fuchs, T.4    Stetter, K.O.5
  • 17
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J. P. & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 18
    • 0033031775 scopus 로고    scopus 로고
    • Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines
    • Itoh, T., Suzuki, K., Sanchez, P. C. & Nakase, T. (1999). Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines. Int J Syst Bacteriol 49, 1157-1163. (Pubitemid 129755401)
    • (1999) International Journal of Systematic Bacteriology , vol.49 , Issue.3 , pp. 1157-1163
    • Itoh, T.1
  • 19
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Edited by H. N. Munro. New York: Academic Press
    • Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 211-232. Edited by H. N. Munro. New York: Academic Press.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 211-232
    • Jukes, T.H.1    Cantor, C.R.2
  • 20
    • 0035989432 scopus 로고    scopus 로고
    • Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor
    • Kashefi, K., Tor, J. M., Holmes, D. E., Gaw Van Praagh, C. V., Reysenbach, A.-L. & Lovley, D. R. (2002a). Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor. Int J Syst Evol Microbiol 52, 719-728.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 719-728
    • Kashefi, K.1    Tor, J.M.2    Holmes, D.E.3    Gaw Van Praagh, C.V.4    Reysenbach, A.-L.5    Lovley, D.R.6
  • 21
    • 0036203813 scopus 로고    scopus 로고
    • Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: Isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov
    • Kashefi, K., Holmes, D. E., Reysenbach, A.-L. & Lovley, D. R. (2002b). Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov. Appl Environ Microbiol 68, 1735-1742.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1735-1742
    • Kashefi, K.1    Holmes, D.E.2    Reysenbach, A.-L.3    Lovley, D.R.4
  • 22
    • 48749108890 scopus 로고    scopus 로고
    • Dissimilatory Fe(III)- And Mn(IV)-reducing prokaryotes
    • 3rd edn, Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer
    • Lovley, D. R. (2006). Dissimilatory Fe(III)- and Mn(IV)-reducing prokaryotes. In The Prokaryotes, 3rd edn, vol. 2, pp. 635-658. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
    • (2006) The Prokaryotes , vol.2 , pp. 635-658
    • Lovley, D.R.1
  • 25
    • 0014734528 scopus 로고
    • Correlation of melting temperature and cesium chloride buoyant density of bacterial deoxyribonucleic acid
    • Mandel, M., Igambi, L., Bergendahl, J., Dodson, M. L., Jr, & Scheltgen, E. (1970). Correlation of melting temperature and cesium chloride buoyant density of bacterial deoxyribonucleic acid. J Bacteriol 101, 333-338.
    • (1970) J Bacteriol , vol.101 , pp. 333-338
    • Mandel, M.1    Igambi, L.2    Bergendahl, J.3    Dodson Jr., M.L.4    Scheltgen, E.5
  • 26
    • 0000012042 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acid from microorganisms
    • Marmur, J. (1963). A procedure for the isolation of deoxyribonucleic acid from microorganisms. Methods Enzymol 6, 726-728.
    • (1963) Methods Enzymol , vol.6 , pp. 726-728
    • Marmur, J.1
  • 27
    • 0030620440 scopus 로고    scopus 로고
    • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
    • Massana, R., Murray, A. E., Preston, C. M. & DeLong, E. F. (1997). Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl Environ Microbiol 63, 50-56. (Pubitemid 27020368)
    • (1997) Applied and Environmental Microbiology , vol.63 , Issue.1 , pp. 50-56
    • Massana, R.1    Murray, A.E.2    Preston, C.M.3    DeLong, E.F.4
  • 28
    • 47249115730 scopus 로고    scopus 로고
    • Archaeoglobus infectus sp. nov., a novel thermophilic, chemolithoheterotrophic archaeon isolated from a deep-sea rock collected at Suiyo Seamount, Izu-Bonin Arc, western Pacific Ocean
    • Mori, K., Maruyama, A., Urabe, T., Suzuki, K. & Hanada, S. (2008). Archaeoglobus infectus sp. nov., a novel thermophilic, chemolithoheterotrophic archaeon isolated from a deep-sea rock collected at Suiyo Seamount, Izu-Bonin Arc, western Pacific Ocean. Int J Syst Evol Microbiol 58, 810-816.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 810-816
    • Mori, K.1    Maruyama, A.2    Urabe, T.3    Suzuki, K.4    Hanada, S.5
  • 30
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J. & Glöckner, F. O. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35, 7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 31
    • 52649114611 scopus 로고
    • The use of lead citrate at high pH as an electron-opaque stain in electron microscopy
    • Reynolds, E. S. (1963). The use of lead citrate at high pH as an electron-opaque stain in electron microscopy. J Cell Biol 17, 208-212.
    • (1963) J Cell Biol , vol.17 , pp. 208-212
    • Reynolds, E.S.1
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0742270464 scopus 로고    scopus 로고
    • The antiquity of microbial sulfate reduction
    • Shen, Y. & Buick, R. (2004). The antiquity of microbial sulfate reduction. Earth Sci Rev 64, 243-272.
    • (2004) Earth Sci Rev , vol.64 , pp. 243-272
    • Shen, Y.1    Buick, R.2
  • 35
    • 33947302827 scopus 로고    scopus 로고
    • Taxonomic parameters revisited: Tarnished gold standards
    • Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155.
    • (2006) Microbiol Today , vol.33 , pp. 152-155
    • Stackebrandt, E.1    Ebers, J.2
  • 36
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849. (Pubitemid 24315169)
    • (1994) International Journal of Systematic Bacteriology , vol.44 , Issue.4 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 37
    • 33746804854 scopus 로고
    • Archaeoglobus fulgidus gen. nov., sp. nov. a new taxon of extremely thermophilic archaebacteria
    • Stetter, K. O. (1988). Archaeoglobus fulgidus gen. nov., sp. nov. a new taxon of extremely thermophilic archaebacteria. Syst Appl Microbiol 10, 172-173.
    • (1988) Syst Appl Microbiol , vol.10 , pp. 172-173
    • Stetter, K.O.1
  • 38
    • 0023159558 scopus 로고
    • Isolation of extremely thermophilic sulfate reducers: Evidence for a novel branch of archaebacteria
    • Stetter, K. O., Lauerer, G., Thomm, M. & Neuner, A. (1987). Isolation of extremely thermophilic sulfate reducers: evidence for a novel branch of archaebacteria. Science 236, 822-824. (Pubitemid 17071157)
    • (1987) Science , vol.236 , Issue.4803 , pp. 822-824
    • Stetter, K.O.1    Laurer, G.2    Thomm, M.3    Neuner, A.4
  • 39
    • 0027676205 scopus 로고
    • Hyperthermophilic archaea are thriving in deep North Sea and Alaskan oil reservoirs
    • DOI 10.1038/365743a0
    • Stetter, K. O., Huber, R., Blöchl, E., Kurr, M., Eden, R. D., Fielder, M., Cash, H. & Vance, I. (1993). Hyperthermophilic archaea are thriving in deep North Sea and Alaskan oil reservoirs. Nature 365, 743-745. (Pubitemid 23339877)
    • (1993) Nature , vol.365 , Issue.6448 , pp. 743-745
    • Stetter, K.O.1    Huber, R.2    Blochl, E.3    Kurr, M.4    Eden, R.D.5    Fielder, M.6    Cash, H.7    Vance, I.8
  • 40
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 41
    • 0035207727 scopus 로고    scopus 로고
    • Anaerobic degradation of aromatic compounds coupled to Fe(III) reduction by Ferroglobus placidus
    • Tor, J. M. & Lovley, D. R. (2001). Anaerobic degradation of aromatic compounds coupled to Fe(III) reduction by Ferroglobus placidus. Environ Microbiol 3, 281-287.
    • (2001) Environ Microbiol , vol.3 , pp. 281-287
    • Tor, J.M.1    Lovley, D.R.2
  • 42
    • 0035289310 scopus 로고    scopus 로고
    • Acetate Oxidation Coupled to Fe(III) Reduction in Hyperthermophilic Microorganisms
    • DOI 10.1128/AEM.67.3.1363-1365.2001
    • Tor, J. M., Kashefi, K. & Lovley, D. R. (2001). Acetate oxidation coupled to Fe(III) reduction in hyperthermophilic microorganisms. Appl Environ Microbiol 67, 1363-1365. (Pubitemid 33643582)
    • (2001) Applied and Environmental Microbiology , vol.67 , Issue.3 , pp. 1363-1365
    • Tor, J.M.1    Kashefi, K.2    Lovley, D.R.3
  • 43
    • 0001614970 scopus 로고
    • Gram-negative mesophilic sulfate-reducing bacteria
    • 2nd edn, Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer
    • Widdel, F. & Bak, F. (1992). Gram-negative mesophilic sulfate-reducing bacteria. In The Prokaryotes, 2nd edn, pp. 3352-3378. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
    • (1992) The Prokaryotes , pp. 3352-3378
    • Widdel, F.1    Bak, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.