Archaeoglobus infectus sp. nov., a novel thermophilic, chemolithoheterotrophic archaeon isolated from a deep-sea rock collected at Suiyo Seamount, Izu-Bonin Arc, western Pacific Ocean

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 4, 2008, Pages 810-816

  Mori, Koji ^a,b   Maruyama, Akihiko ^b   Urabe, Tetsuro ^c   Suzuki, Ken Ichiro ^a   Hanada, Satoshi ^b  

^a NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL COENZYME A; ADENOSINE 5' PHOSPHOSULFATE REDUCTASE ALPHA SUBUNIT; BACTERIAL PROTEIN; CARBON; HYDROGEN; HYDROGEN SULFITE REDUCTASE ALPHA SUBUNIT; HYDROGEN SULFITE REDUCTASE BETA SUBUNIT; MESNA; PROTEIN DSRAB; RNA 16S; SODIUM CHLORIDE; SULFITE; THIOSULFATE; UNCLASSIFIED DRUG; BACTERIAL DNA; BACTERIAL RNA; PRIMER DNA; SEA WATER;

ANAEROBIC BACTERIUM; ARCHAEOGLOBUS; ARCHAEOGLOBUS INFECTUS; ARCHAEOGLOBUS VENEFICUS; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CARBON DIOXIDE FIXATION; CHEMOLITHOTROPH; CONTROLLED STUDY; DEEP SEA; HETEROTROPH; HYDROTHERMAL VENT SPECIES; METHANOGENESIS; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PACIFIC OCEAN; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; ROCK; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION; STRAIN DIFFERENCE; THERMOPHILIC BACTERIUM; TYPE STRAIN; BACTERIAL GENE; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; GENETICS; HEAT; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NOMENCLATURE; PHYLOGENY; SEDIMENT; SPECIES DIFFERENCE; TRANSMISSION ELECTRON MICROSCOPY;

ARCHAEA; ARCHAEOGLOBUS; ARCHAEOGLOBUS VENEFICUS;

ARCHAEOGLOBUS; BASE COMPOSITION; BASE SEQUENCE; DNA PRIMERS; DNA, BACTERIAL; GENES, BACTERIAL; GEOLOGIC SEDIMENTS; HEAT; MESNA; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; PACIFIC OCEAN; PHENOTYPE; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEAWATER; SPECIES SPECIFICITY; TERMINOLOGY AS TOPIC;

EID: 47249115730     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65422-0     Document Type: Article

References (40)

1. Achenbach, L. & Woese, C. (1995). 16S and 23S rRNA-like primers. In Archaea: a Laboratory Manual, pp. 201-203. Edited by F. T. Robb, A. R. Place, K. R. Sowers, H. J. Schreier, S. DasSarma & E. M. Fleischmann. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
2. Allen, J. R., Clark, D. D., Krum, J. G. & Ensign, S. A. (1999). A role for coenzyme M (2-mercaptoethanesulfonic acid) in a bacterial pathway of aliphatic epoxide carboxylation. Proc Natl Acad Sci U S A 96, 8432-8437.
3. Boyd, J. M., Ellsworth, A. & Ensign, S. A. (2006). Characterization of 2-bromoethanesulfonate as a selective inhibitor of the coenzyme M-dependent pathway and enzymes of bacterial aliphatic epoxide metabolism. J Bacteriol 188, 8062-8069.
4. Burggraf, S., Jannasch, H. W., Nicolaus, B. & Stetter, K. O. (1990). Archaeglobus profundus sp. nov., represents a new species within the sulfate-reducing Archaebacteria. Syst Appl Microbiol 13, 24-28.
5. Coleman, N. V. & Spain, J. C. (2003a). Epoxyalkane: coenzyme M transferase in the ethene and vinyl chloride biodegradation pathways of Mycobacterium strain JS60. J Bacteriol 185, 5536-5545.
6. Coleman, N. V. & Spain, J. C. (2003b). Distribution of the coenzyme M pathway of epoxide metabolism among ethene- and vinyl chloride-degrading Mycobacterium strains. Appl Environ Microbiol 69, 6041-6046.
7. Danko, A. S., Saski, C. A., Tomkins, J. P. & Freedman, D. L. (2006). Involvement of coenzyme M during aerobic biodegradation of vinyl chloride and ethene by Pseudomonas putida strain AJ and Ochrobactrum sp. strain TD. Appl Environ Microbiol 72, 3756-3758.
8. Friedrich, M. W. (2002). Phylogenetic analysis reveals multiple lateral transfers' of 'adenosine-5′-phosphosulfate reductase genes among sulfate-reducing microorganisms. J Bacteriol 184, 278-289.
9. Glasby, G. P., Iizasa, K., Yuasa, M. & Usui, A. (2000). Submarine hydrothermal mineralization on the Izu-Bonin Arc, south of Japan: an overview. Mar Georesour Geotechnol 18, 141-176.
10. Graham, D. E. & White, R. H. (2002). Elucidation of methanogenic coenzyme biosyntheses: from spectroscopy to genomics. Nat Prod Rep 19, 63-147.
11. 2+ at neutral pH under anoxic conditions. Arch Microbiol 166, 308-314.
12. Hara, K., Kakegawa, T., Yamashiro, K., Maruyama, A., Ishibashi, J., Marumo, K., Urabe, T. & Yamagishi, A. (2005). Analysis of the archaeal sub-seafloor community at Suiyo Seamount on the Izu-Bonin Arc. Adv Space Res 35, 1634-1642.
13. Hattori, S., Kamagata, Y., Hanada, S. & Shoun, H. (2000). Thermacetogenium phaeum gen. nov., sp. nov., a strictly anaerobic, thermophilic, syntrophic acetate-oxidizing bacterium. Int J Syst Evol Microbiol 50, 1601-1609.
14. Higashi, Y., Sunamura, M., Kitamura, K., Nakamura, K.A., Kurusu, Y., Ishibashi, J.-I., Urabe, T. & Maruyama, A. (2004). Microbial diversity in hydrothermal surface to subsurface environments of Suiyo Seamount, Izu-Bonin Arc, using a catheter-type in situ growth chamber. FEMS Microbiol Ecol 47, 327-336.
15. Huber, H., Jannasch, H., Rachel, R., Fuchs, T. & Stetter, K. O. (1997). Archaeoglobus veneficus sp. nov., a novel facultative chemolithoautotrophic hyperthermophilic sulfite reducer, isolated from abyssal black smokers. Syst Appl Microbiol 20, 374-380.
16. Itoh, T., Suzuki, K., Sanchez, P. C. & Nakase, T. (1999). Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines. Int J Syst Bacteriol 49, 1157-1163.
17. Kashefi, K., Tor, J. M., Holmes, D. E., Gaw Van Praegh, C. V., Reysenbach, A. L. & Lovley, D. R. (2002). Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor. Int J Syst Evol Microbiol 52, 719-728.
18. Klenk, H. P., Clayton, R. A., Tomb, J. F., White, O., Nelson, K. E., Ketchum, K. A., Dodson, R. J., Gwinn, M., Hickey, E. K. & other authors (1997). The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390, 364-370.
19. Ludwig, W., Strunk O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
20. Mattes, T. E., Coleman, N. V., Spain, J. C. & Gossett, J. M. (2005). Physiological and molecular genetic analyses of vinyl chloride and ethene biodegradation in Nocardioides sp. strain JS614. Arch Microbiol 183, 95-106.
21. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
22. Miller, T. L., Wolin, M. J., Zhao, H. X. & Bryant, M. P. (1986). Characteristics of methanogens isolated from bovine rumen. Appl Environ Microbiol 51, 201-202.
23. Mori, K., Yamamoto, H., Kamagata, Y., Hatsu, M. & Takamizawa, K. (2000). Methanocalculus pumilus sp. nov., a heavy-metal-tolerant methanogen isolated from a waste-disposal site. Int J Syst Evol Microbiol 50, 1723-1729.
24. NBRC (2005). NBRC Catalogue of Biological Resources: Microorganisms, Genomic DNA Clones, and cDNAs. Chiba, Japan: National Institute of Technology and Evaluation (NITE).
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Sprenger, W. W., van Belzen, M. C., Rosenberg, J., Hackstein, J. H. & Keltiens, J. T. (2000). Methanomicrococcus blatticala gen. nov., sp nov., a methanol- and methylamine-reducing methanogen from the hindgut of the cockroach Periplaneta americana. Int J Syst Evol Microbiol 50, 1989-1999.
27. Stetter, K. O. (1989). Archaeoglobus fulgidus gen. nov., sp. nov. a new taxon of extremely thermophilic Archaebacteria. Syst Appl Microbiol 10, 172-173.
28. Stefter, K. O., Lauerer, G., Thomm, M. & Neuner, A. (1987). Isolation of extremely thermophilic sulfate reducers: evidence for a novel branch of archaebacteria. Science 236, 822-824.
29. Stetter, K. O., Huber, R., Blöchl, E., Kurr, M., Eden, R. D., Feilder, M. Cash, H. & Vance, I. (1943). Hyperthermophilic archaea are thriving in deep North Sea and Alaskan oil reservoirs. Nature 365, 743-745.
30. Tamaki, H., Hanada, S., Kamagata, Y., Nakamura, K., Nomura, N. Nakano, K. & Matsumura, M. (2003). Flavobacterium limicola sp. nov. a psychrophilic, organic-polymer-degrading bacterium isolated from freshwater sediments. Int J Syst Evol Microbiol 53, 519-526.
31. 3). J Biol Chem 249, 4879-4885.
32. Taylor, C. D., McBride, B. C., Wolfe, R. S. & Bryant, M. P. (1974). Coenzyme M, essential for growth of a rumen strain of Methanobacterium ruminantium. J Bacteriol 120, 974-975.
33. Thauer, R. K. (1998). Biochemistry of methanogenesis: a tribute to Marjory Stephenson. 1998 Marjory Stephenson Prize Lecture Microbiology 144, 2377-2406.
34. Thompson, J. D., Gibson, T. J., Piewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
35. Tor, J. M., Kashefi, K. & Lovley, D. R. (2001). Acetate oxidation coupled to Fe(III) reduction in hyperthermophilic microorganisms. Appl Environ Microbiol 67, 1363-1365.
36. Tsunogai, U., Ishibashi, J., Wakita, H., Gamo, T., Watanabe, K. Kajimura, T., Kanayama, S. & Sakai, H. (1994). Peculiar features of Suiyo Seamount hydrothermal fluids, Izu-Bonin Arc: differences from subaerial volcanism. Earth Planet Sci Lett 126, 289-301.
37. Vargas, M., Kashefi, K., Blunt-Harris, E. L. & Lovley, D. R. (1998). Microbiological evidence for Fe(III) reduction on early Earth. Nature 395, 65-67.
38. 2 fixation in Archaeoglobus lithotrophicus and the lack of carbon monoxide dehydrogenase in the heterotrophic A. profundus. Arch Microbiol 163, 112-118.
39. 2O in Ferroglobus placidus. Arch Microbiol 167, 19-23
40. Wagner, M., Roger, A. J., Flax, J. L., Brusseau, G. A. & Stahl, D. A. (1998). Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol 180, 2975-2982.