메뉴 건너뛰기




Volumn 156, Issue 12, 2010, Pages 3791-3800

6S RNA regulation of relA alters ppGpp levels in early stationary phase

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; PROTEIN PPGPP SYNTHASE; RIBOSOME RNA; RNA; RNA 6S; SYNTHETASE; TRANSCRIPTION FACTOR RELA; UNCLASSIFIED DRUG;

EID: 78650047201     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.043992-0     Document Type: Article
Times cited : (30)

References (38)
  • 1
    • 0035951305 scopus 로고    scopus 로고
    • Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro
    • DOI 10.1006/jmbi.2000.4327
    • Barker, M. M., Gaal, T., Josaitis, C. A. & Gourse, R. L. (2001). Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. J Mol Biol 305, 673-688. (Pubitemid 33030018)
    • (2001) Journal of Molecular Biology , vol.305 , Issue.4 , pp. 673-688
    • Barker, M.M.1    Gaal, T.2    Josaitis, C.A.3    Gourse, R.L.4
  • 5
    • 37749024824 scopus 로고    scopus 로고
    • ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sE in Escherichia coli by both direct and indirect mechanisms
    • Costanzo, A., Nicoloff, H., Barchinger, S. E., Banta, A. B., Gourse, R. L. & Ades, S. E. (2008). ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sE in Escherichia coli by both direct and indirect mechanisms. Mol Microbiol 67, 619-632.
    • (2008) Mol Microbiol , vol.67 , pp. 619-632
    • Costanzo, A.1    Nicoloff, H.2    Barchinger, S.E.3    Banta, A.B.4    Gourse, R.L.5    Ades, S.E.6
  • 6
    • 22644441730 scopus 로고    scopus 로고
    • The phage-shock-protein response
    • Darwin, A. J. (2005). The phage-shock-protein response. Mol Microbiol 57, 621-628.
    • (2005) Mol Microbiol , vol.57 , pp. 621-628
    • Darwin, A.J.1
  • 8
    • 14544287732 scopus 로고    scopus 로고
    • Escherichia coli ribosomal RNA transcription: Regulatory roles for ppGpp, NTPs, architectural proteins and a polymerase-binding protein
    • Gralla, J. D. (2005). Escherichia coli ribosomal RNA transcription: regulatory roles for ppGpp, NTPs, architectural proteins and a polymerase-binding protein. Mol Microbiol 55, 973-977.
    • (2005) Mol Microbiol , vol.55 , pp. 973-977
    • Gralla, J.D.1
  • 9
    • 0014220139 scopus 로고
    • Fractionation of 32P-labelled ribonucleic acids on polyacrylamide gels and their characterization by fingerprinting
    • Hindley, J. (1967). Fractionation of 32P-labelled ribonucleic acids on polyacrylamide gels and their characterization by fingerprinting. J Mol Biol 30, 125-136.
    • (1967) J Mol Biol , vol.30 , pp. 125-136
    • Hindley, J.1
  • 10
    • 0035688744 scopus 로고    scopus 로고
    • Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli
    • Hirvonen, C. A., Ross, W., Wozniak, C. E., Marasco, E., Anthony, J. R., Aiyar, S. E., Newburn, V. H. & Gourse, R. L. (2001). Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli. J Bacteriol 183, 6305-6314.
    • (2001) J Bacteriol , vol.183 , pp. 6305-6314
    • Hirvonen, C.A.1    Ross, W.2    Wozniak, C.E.3    Marasco, E.4    Anthony, J.R.5    Aiyar, S.E.6    Newburn, V.H.7    Gourse, R.L.8
  • 11
    • 0037093379 scopus 로고    scopus 로고
    • Regulation of sigma factor competition by the alarmone ppGpp
    • Jishage, M., Kvint, K., Shingler, V. & Nyström, T. (2002). Regulation of sigma factor competition by the alarmone ppGpp. Genes Dev 16, 1260-1270.
    • (2002) Genes Dev , vol.16 , pp. 1260-1270
    • Jishage, M.1    Kvint, K.2    Shingler, V.3    Nyström, T.4
  • 13
    • 0021950348 scopus 로고
    • Escherichia coli 6S RNA is not essential for growth or protein secretion
    • Lee, C. A., Fournier, M. J. & Beckwith, J. (1985). Escherichia coli 6S RNA is not essential for growth or protein secretion. J Bacteriol 161, 1156-1161. (Pubitemid 15138547)
    • (1985) Journal of Bacteriology , vol.161 , Issue.3 , pp. 1156-1161
    • Lee, C.A.1    Fournier, M.J.2    Beckwith, J.3
  • 14
    • 18044367581 scopus 로고    scopus 로고
    • PpGpp: A global regulator in Escherichia coli
    • DOI 10.1016/j.tim.2005.03.008
    • Magnusson, L. U., Farewell, A. & Nyström, T. (2005). ppGpp: a global regulator in Escherichia coli. Trends Microbiol 13, 236-242. (Pubitemid 40603907)
    • (2005) Trends in Microbiology , vol.13 , Issue.5 , pp. 236-242
    • Magnusson, L.U.1    Farewell, A.2    Nystrom, T.3
  • 16
  • 17
    • 0141605202 scopus 로고    scopus 로고
    • Identification and analysis of "extended -10" promoters in Escherichia coli
    • Mitchell, J. E., Zheng, D., Busby, S. J. W. & Minchin, S. D. (2003). Identification and analysis of "extended -10" promoters in Escherichia coli. Nucleic Acids Res 31, 4689-4695.
    • (2003) Nucleic Acids Res , vol.31 , pp. 4689-4695
    • Mitchell, J.E.1    Zheng, D.2    Busby, S.J.W.3    Minchin, S.D.4
  • 18
    • 0030907620 scopus 로고    scopus 로고
    • The Escherichia coli phage-shock-protein (psp) operon
    • Model, P., Jovanovic, G. & Dworkin, J. (1997). The Escherichia coli phage-shock-protein (psp) operon. Mol Microbiol 24, 255-261. (Pubitemid 27223857)
    • (1997) Molecular Microbiology , vol.24 , Issue.2 , pp. 255-261
    • Model, P.1    Jovanovic, G.2    Dworkin, J.3
  • 19
    • 0041669435 scopus 로고    scopus 로고
    • Control of rRNA expression by small molecules is dynamic and nonredundant
    • Murray, H. D., Schneider, D. A. & Gourse, R. L. (2003). Control of rRNA expression by small molecules is dynamic and nonredundant. Mol Cell 12, 125-134.
    • (2003) Mol Cell , vol.12 , pp. 125-134
    • Murray, H.D.1    Schneider, D.A.2    Gourse, R.L.3
  • 20
    • 33845486206 scopus 로고    scopus 로고
    • Identification and characterization of a second, inducible promoter of relA in Escherichia coli
    • DOI 10.1266/ggs.81.299
    • Nakagawa, A., Oshima, T. & Mori, H. (2006). Identification and characterization of a second, inducible promoter of relA in Escherichia coli. Genes Genet Syst 81, 299-310. (Pubitemid 44912781)
    • (2006) Genes and Genetic Systems , vol.81 , Issue.5 , pp. 299-310
    • Nakagawa, A.1    Oshima, T.2    Mori, H.3
  • 21
  • 22
    • 77949481723 scopus 로고    scopus 로고
    • Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery
    • Neusser, T., Polen, T., Geissen, R. & Wagner, R. (2010). Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery. BMC Genomics 11, 165-178.
    • (2010) BMC Genomics , vol.11 , pp. 165-178
    • Neusser, T.1    Polen, T.2    Geissen, R.3    Wagner, R.4
  • 23
  • 25
    • 0028230951 scopus 로고
    • Factor independent activation of rrnBP1. An "extended" promoter with an upstream element that dramatically increases promoter strength
    • Rao, L., Ross, W., Appleman, J. A., Gaal, T., Leirmo, S., Schlax, P. J., Record, M. T., Jr & Gourse, R. L. (1994). Factor independent activation of rrnBP1. An "extended" promoter with an upstream element that dramatically increases promoter strength. J Mol Biol 235, 1421-1435.
    • (1994) J Mol Biol , vol.235 , pp. 1421-1435
    • Rao, L.1    Ross, W.2    Appleman, J.A.3    Gaal, T.4    Leirmo, S.5    Schlax, P.J.6    Record Jr., M.T.7    Gourse, R.L.8
  • 26
    • 1542319732 scopus 로고    scopus 로고
    • Relationship between growth rate and ATP concentration in Escherichia coli: A bioassay for available cellular ATP
    • Schneider, D. A. & Gourse, R. L. (2004). Relationship between growth rate and ATP concentration in Escherichia coli: a bioassay for available cellular ATP. J Biol Chem 279, 8262-8268.
    • (2004) J Biol Chem , vol.279 , pp. 8262-8268
    • Schneider, D.A.1    Gourse, R.L.2
  • 27
    • 0348011826 scopus 로고    scopus 로고
    • Measuring control of transcription initiation by changing concentrations of nucleotides and their derivatives
    • Schneider, D. A., Murray, H. D. & Gourse, R. L. (2003). Measuring control of transcription initiation by changing concentrations of nucleotides and their derivatives. Methods Enzymol 370, 606-617.
    • (2003) Methods Enzymol , vol.370 , pp. 606-617
    • Schneider, D.A.1    Murray, H.D.2    Gourse, R.L.3
  • 29
    • 42149158392 scopus 로고    scopus 로고
    • Control of bacterial transcription, translation and replication by (p)ppGpp
    • Srivatsan, A. & Wang, J. D. (2008). Control of bacterial transcription, translation and replication by (p)ppGpp. Curr Opin Microbiol 11, 100-105.
    • (2008) Curr Opin Microbiol , vol.11 , pp. 100-105
    • Srivatsan, A.1    Wang, J.D.2
  • 30
    • 3242807381 scopus 로고    scopus 로고
    • 6S RNA function enhances long-term cell survival
    • Trotochaud, A. E. & Wassarman, K. M. (2004). 6S RNA function enhances long-term cell survival. J Bacteriol 186, 4978-4985.
    • (2004) J Bacteriol , vol.186 , pp. 4978-4985
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 31
    • 18344371528 scopus 로고    scopus 로고
    • A highly conserved 6S RNA structure is required for regulation of transcription
    • Trotochaud, A. E. & Wassarman, K. M. (2005). A highly conserved 6S RNA structure is required for regulation of transcription. Nat Struct Mol Biol 12, 313-319.
    • (2005) Nat Struct Mol Biol , vol.12 , pp. 313-319
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 32
    • 33744774173 scopus 로고    scopus 로고
    • 6S RNA regulation of pspF transcription leads to altered cell survival at high pH
    • Trotochaud, A. E. & Wassarman, K. M. (2006). 6S RNA regulation of pspF transcription leads to altered cell survival at high pH. J Bacteriol 188, 3936-3943.
    • (2006) J Bacteriol , vol.188 , pp. 3936-3943
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 33
    • 0029118987 scopus 로고
    • The -16 region, a vital sequence for the utilization of a promoter in Bacillus subtilis and Escherichia coli
    • Voskuil, M. I., Voepel, K. & Chambliss, G. H. (1995). The -16 region, a vital sequence for the utilization of a promoter in Bacillus subtilis and Escherichia coli. Mol Microbiol 17, 271-279.
    • (1995) Mol Microbiol , vol.17 , pp. 271-279
    • Voskuil, M.I.1    Voepel, K.2    Chambliss, G.H.3
  • 34
    • 34548348934 scopus 로고    scopus 로고
    • 6S RNA: A regulator of transcription
    • Wassarman, K. M. (2007). 6S RNA: a regulator of transcription. Mol Microbiol 65, 1425-1431.
    • (2007) Mol Microbiol , vol.65 , pp. 1425-1431
    • Wassarman, K.M.1
  • 35
    • 33845450357 scopus 로고    scopus 로고
    • Synthesis-mediated release of a small RNA inhibitor of RNA polymerase
    • Wassarman, K. M. & Saecker, R. M. (2006). Synthesis-mediated release of a small RNA inhibitor of RNA polymerase. Science 314, 1601-1603.
    • (2006) Science , vol.314 , pp. 1601-1603
    • Wassarman, K.M.1    Saecker, R.M.2
  • 36
    • 0034625237 scopus 로고    scopus 로고
    • 6S RNA regulates E. coli RNA polymerase activity
    • Wassarman, K. M. & Storz, G. (2000). 6S RNA regulates E. coli RNA polymerase activity. Cell 101, 613-623.
    • (2000) Cell , vol.101 , pp. 613-623
    • Wassarman, K.M.1    Storz, G.2
  • 37
    • 29044449362 scopus 로고    scopus 로고
    • 6S RNA - An ancient regulator of bacterial RNA polymerase rediscovered
    • Willkomm, D. K. & Hartmann, R. K. (2005). 6S RNA - an ancient regulator of bacterial RNA polymerase rediscovered. Biol Chem 386, 1273-1277.
    • (2005) Biol Chem , vol.386 , pp. 1273-1277
    • Willkomm, D.K.1    Hartmann, R.K.2
  • 38
    • 0025992789 scopus 로고
    • Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations
    • Xiao, H., Kalman, M., Ikehara, K., Zemel, S., Glaser, G. & Cashel, M. (1991). Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations. J Biol Chem 266, 5980-5990.
    • (1991) J Biol Chem , vol.266 , pp. 5980-5990
    • Xiao, H.1    Kalman, M.2    Ikehara, K.3    Zemel, S.4    Glaser, G.5    Cashel, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.