A pattern analysis of gene conversion literature

Comparative and Functional Genomics

Volumn 2009, Issue , 2009, Pages

  Lawson, Mark J ^a   Jiao, Jian ^a   Fan, Weiguo ^a   Zhang, Liqing ^a  

^a State University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBONATE DEHYDRATASE II; COMPLEMENT COMPONENT C4A; DEBRISOQUINE; HEMOGLOBIN H; IMMUNOGLOBULIN; LEVO IDURONIDASE; MAJOR HISTOCOMPATIBILITY ANTIGEN; NUCLEIC ACID BINDING PROTEIN; RAD51 PROTEIN; RAD52 PROTEIN; RAD54 PROTEIN; RAD57 PROTEIN; RAD59 PROTEIN; STEROID 21 MONOOXYGENASE; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ADENOSINE DEAMINASE DEFICIENCY; ALLELE; ANAPLASMA MARGINALE; ANAPLASMA PHAGOCYTOPHILUM; ARABIDOPSIS; ASPERGILLUS NIDULANS; BABESIA BOVIS; BABESIOSIS; BETA THALASSEMIA; BORRELIA BURGDORFERI; BORRELIA HERMSII; BREAST CANCER; CAMPOMELIC DYSPLASIA; CANDIDA ALBICANS; CARBONATE DEHYDRATASE II DEFICIENCY; CHICKEN; CHINESE HAMSTER; CHRONIC MYELOID LEUKEMIA; CHRONIC PANCREATITIS; COLORECTAL CANCER; COMPLEMENT DEFICIENCY; CONGENITAL ADRENAL HYPERPLASIA; COW; DROSOPHILA MELANOGASTER; ENZYME DEFICIENCY; ESCHERICHIA COLI; EVOLUTIONARY ADAPTATION; EXON; FACIOSCAPULOHUMERAL MUSCULAR DYSTROPHY; FANCONI ANEMIA; FRAGILE X SYNDROME; FRIEDREICH ATAXIA; GAUCHER DISEASE; GENE CONVERSION; GENE LOCATION; GENE TRANSFER; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC VARIABILITY; HEMOLYTIC UREMIC SYNDROME; HEMOPHILIA A; HEREDITARY MOTOR SENSORY NEUROPATHY; HEREDITARY NONPOLYPOSIS COLORECTAL CANCER; HOMOCYSTINURIA; HUMAN; HUNTINGTON CHOREA; HURLER SYNDROME; HYPERGONADOTROPIC HYPOGONADISM; HYPERTENSION; IMMUNOGLOBULIN GENE; INCONTINENTIA PIGMENTI; INTRON; KIDNEY POLYCYSTIC DISEASE; MACHADO JOSEPH DISEASE; MAIZE; MALE INFERTILITY; MUCOPOLYSACCHARIDOSIS; MYCOPLASMA GENITALIUM; MYCOPLASMA SYNOVIAE; MYELOMA; MYOTONIC DYSTROPHY; NEISSERIA GONORRHOEAE; NEISSERIA MENINGITIDIS; NEURAL TUBE DEFECT; NEUROFIBROMATOSIS; NEUROPATHY; NONHODGKIN LYMPHOMA; NONHUMAN; OBESITY; ORYCTOLAGUS CUNICULUS; PAN TROGLODYTES; PANCREATITIS; PHENYLKETONURIA; PLASMODIUM FALCIPARUM; PRIORITY JOURNAL; PROTEUS MIRABILIS; PSEUDOGENE; PSEUDOXANTHOMA ELASTICUM; RABBIT; REVIEW; RHEUMATOID ARTHRITIS; SACCHAROMYCES CEREVISIAE; SALMONELLA TYPHIMURIUM; SCHEIE SYNDROME; SCHIZOSACCHAROMYCES POMBE; SCHWACHMAN SYNDROME; SICKLE CELL ANEMIA; SILKWORM; SMITH MAGENIS SYNDROME; SPINAL MUSCULAR ATROPHY; SPINOCEREBELLAR DEGENERATION; STREPTOCOCCUS PNEUMONIAE; SYNECHOCYSTIS; SYPHILIS; TAXONOMY; THALASSEMIA; THROMBOCYTOPENIA; TOBACCO; TREPONEMA PALLIDUM; TRYPANOSOMA BRUCEI; VON WILLEBRAND DISEASE;

EID: 78650006433     PISSN: 15316912     EISSN: 15326268     Source Type: Journal    
DOI: 10.1155/2009/761512     Document Type: Review

References (29)

1. Chen J.-M., Cooper D. N., Chuzhanova N., Férec C., Patrinos G. P., Gene conversion: mechanisms, evolution and human disease Nature Reviews Genetics 2007 8 10 762 775 (Pubitemid 47429210)
2. Kruithof E. K. O., Satta N., Liu J. W., Dunoyer-Geindre S., Fish R. J., Gene conversion limits divergence of mammalian TLR1 and TLR6 BMC Evolutionary Biology 2007 7, article 148
3. Bischof J. M., Chiang A. P., Scheetz T. E., Genome-wide identification of pseudogenes capable of disease-causing gene conversion Human Mutation 2006 27 545 552 (Pubitemid 43865727)
4. Strumberg D., Hauffa B. P., Horsthemke B., Grosse-Wilde H., Molecular detection of genetic defects in congenital adrenal hyperplasia due to 21-hydroxylase deficiency: a study of 27 families European Journal of Pediatrics 1992 151 11 821 826
5. Bussaglia E., Clermont O., Tizzano E., A frame-shift deletion in the survival motor neuron gene in Spanish spinal muscular atrophy patients Nature Genetics 1995 11 3 335 337
6. Takahata N., Satta Y., Selection, convergence, and intragenic recombination in HLA diversity Genetica 1998 102-103 157 169 (Pubitemid 28371716)
7. Maizels N., Immunoglobulin gene diversification Annual Review of Genetics 2005 39 23 46 (Pubitemid 43011106)
8. Sawyer S., Statistical tests for detecting gene conversion Molecular Biology and Evolution 1989 6 5 526 538 (Pubitemid 19210235)
9. Jakobsen I. B., Wilson S. R., Easteal S., The partition matrix: exploring variable phylogenetic signals along nucleotide sequence alignments Molecular Biology and Evolution 1997 14 5 474 484 (Pubitemid 27200478)
10. Lawson M. J., Heath L. S., Ramakrishnan N., Zhang L., Huang D.-S., Wunsch D. C. II, Levine D. S., Jo K.-H., Using cost-sensitive learning to determine gene conversions 5227 Proceedings of the 4th International Conference on Intelligent Computing (ICIC 08) September 2008 Shanghai, China Springer 1030 1038 Lecture Notes in Computer Science
11. Wheeler D. L., Barrett T., Benson D. A., Database resources of the National Center for Biotechnology Information Nucleic Acids Research 2008 36 supplement 1 D13 D21
12. Petersen-Mahrt S. K., Harris R. S., Neuberger M. S., AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification Nature 2002 418 6893 99 103 (Pubitemid 34742579)
13. Flicek P., Aken B. L., Beal K., Ensembl 2008 Nucleic Acids Research 2008 36 supplement 1 D707 D714
14. Mangan M. E., Williams J. M., Lathe S. M., Karolchik D., Lathe W. C. III, UCSC genome browser: deep support for molecular biomedical research Biotechnology Annual Review 2008 14 63 108 (Pubitemid 351903450)
15. Sugawara N., Ivanov E. L., Fishman-Lobell J., Ray B. L., Wu X., Haber J. E., DNA structure-dependent requirements for yeast RAD genes in gene conversion Nature 1995 373 6509 84 86
16. Hanioka N., Kimura S., Meyer U. A., Gonzalez F. J., The human CYP2D locus associated with a common genetic defect in drug oxidation: a G1934a base change in intron 3 of a mutant CYP2D6 allele results in an aberrant 3′ splice recognition site American Journal of Human Genetics 1990 47 6 994 1001 (Pubitemid 120024070)
17. White P. C., Slutsker L., Haplotype analysis of CYP11B2 Endocrine Research 1995 21 1-2 437 442
18. Beck S., Geraghty D., Inoko H., Complete sequence and gene map of a human major histocompatibility complex Nature 1999 401 6756 921 923
19. Milinski M., The major histocompatibility complex, sexual selection, and mate choice Annual Review of Ecology, Evolution, and Systematics 2006 37 159 186 (Pubitemid 44907616)
20. Arakawa H., Buerstedde J.-M., Immunoglobulin gene conversion: insights from bursal B cells and the DT40 cell line Developmental Dynamics 2004 229 3 458 464 (Pubitemid 38294894)
21. Weinstein P. D., Mage R. G., Anderson A. O., The appendix functions as a mammalian bursal equivalent in the developing rabbit Advances in Experimental Medicine and Biology 1994 355 249 253
22. Butler J. E., Immunoglobulin diversity, B-cell and antibody repertoire development in large farm animals Revue Scientifique et Technique 1998 17 1 43 70 (Pubitemid 128366512)
23. Santoyo G., Romero D., Gene conversion and concerted evolution in bacterial genomes FEMS Microbiology Reviews 2005 29 2 169 183 (Pubitemid 40432466)
24. Ikeuchi M., Tabata S., Synechocystis sp. PCC 6803a useful tool in the study of the genetics of cyanobacteria Photosynthesis Research 2001 70 1 73 83 (Pubitemid 34128539)
25. Labarre J., Chauvat F., Thuriaux P., Insertional mutagenesis by random cloning of antibiotic resistance genes into the genome of the cyanobacterium Synechocystis strain PCC 6803 Journal of Bacteriology 1989 171 6 3449 3457 (Pubitemid 19145701)
26. Berriman M., Ghedin E., Hertz-Fowler C., The genome of the African trypanosome Trypanosoma brucei Science 2005 309 5733 416 422 (Pubitemid 40994676)
27. Holliday R., A mechanism for gene conversion in fungi Genetic Research 1964 5 282 304
28. Haber J. E., Mating-type gene switching in Saccharomyces cerevisiae Annual Review of Genetics 1998 32 561 599 (Pubitemid 29045325)
29. Gairola C., Genetic effects of fresh cigarette smoke in Saccharomyces cerevisiae Mutation Research 1982 102 2 123 136 (Pubitemid 12047228)