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Volumn 74, Issue 6, 2010, Pages 631-643

The amplification and evolution of orthologous 22-kDa α-prolamin tandemly arrayed genes in coix, sorghum and maize genomes

Author keywords

22 kDa prolamin; Andropogoneae; Evolution; Gene amplification; Gene cluster

Indexed keywords

PROLAMIN;

EID: 78649904049     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-010-9705-5     Document Type: Article
Times cited : (12)

References (61)
  • 1
    • 0000241156 scopus 로고
    • Job's-tears (coix lacryma-jobi)-a minor food and fodder crop of northeastern India
    • Arora RK (1977) Job's-tears (coix lacryma-jobi)-a minor food and fodder crop of northeastern India. Econ Bot 31: 358-366.
    • (1977) Econ Bot , vol.31 , pp. 358-366
    • Arora, R.K.1
  • 2
    • 0036021693 scopus 로고    scopus 로고
    • Mechanisms and rates of genome expansion and contraction in flowering plants
    • Bennetzen JL (2002) Mechanisms and rates of genome expansion and contraction in flowering plants. Genetica 115: 29-36.
    • (2002) Genetica , vol.115 , pp. 29-36
    • Bennetzen, J.L.1
  • 3
    • 33847298027 scopus 로고    scopus 로고
    • Patterns in grass genome evolution
    • Bennetzen JL (2007) Patterns in grass genome evolution. Curr Opin Plant Biol 10: 176-181.
    • (2007) Curr Opin Plant Biol , vol.10 , pp. 176-181
    • Bennetzen, J.L.1
  • 4
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
    • Blanc G, Hokamp K, Wolfe KH (2003) A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res 13: 137-144.
    • (2003) Genome Res , vol.13 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 5
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers JE, Chapman BA, Rong J, Paterson AH (2003) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438.
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 7
    • 0030460180 scopus 로고    scopus 로고
    • The Sec-1 locus on the short arm of chromosome 1R of rye (Secale cereale)
    • Clarke BC, Mukai Y, Appels R (1996) The Sec-1 locus on the short arm of chromosome 1R of rye (Secale cereale). Chromosoma 105: 269-275.
    • (1996) Chromosoma , vol.105 , pp. 269-275
    • Clarke, B.C.1    Mukai, Y.2    Appels, R.3
  • 8
    • 0011821794 scopus 로고
    • Notes on the tribe Andropogoneae (Gramineae)
    • Clayton WD (1983) Notes on the tribe Andropogoneae (Gramineae). Kew Bull 35: 813-818.
    • (1983) Kew Bull , vol.35 , pp. 813-818
    • Clayton, W.D.1
  • 10
    • 0000898564 scopus 로고
    • Characterization of the kafirin gene family from sorghum reveals extensive homology with zein from maize
    • DeRose RT, Ma DP, Kwon IS, Hasnain SE, Klassy RC, Hall TC (1989) Characterization of the kafirin gene family from sorghum reveals extensive homology with zein from maize. Plant Mol Biol 12: 245-256.
    • (1989) Plant Mol Biol , vol.12 , pp. 245-256
    • Derose, R.T.1    Ma, D.P.2    Kwon, I.S.3    Hasnain, S.E.4    Klassy, R.C.5    Hall, T.C.6
  • 11
    • 0036061848 scopus 로고    scopus 로고
    • Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
    • Devos KM, Brown JK, Bennetzen JL (2002) Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res 12: 1075-1079.
    • (2002) Genome Res , vol.12 , pp. 1075-1079
    • Devos, K.M.1    Brown, J.K.2    Bennetzen, J.L.3
  • 12
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 13
    • 61649092789 scopus 로고    scopus 로고
    • Expressional profiling study revealed unique expressional patterns and dramatic expressional divergence of maize alpha-zein super gene family
    • Feng L, Zhu J, Wang G, Tang Y, Chen H, Jin W, Wang F, Mei B, Xu Z, Song R (2009) Expressional profiling study revealed unique expressional patterns and dramatic expressional divergence of maize alpha-zein super gene family. Plant Mol Biol 69: 649-659.
    • (2009) Plant Mol Biol , vol.69 , pp. 649-659
    • Feng, L.1    Zhu, J.2    Wang, G.3    Tang, Y.4    Chen, H.5    Jin, W.6    Wang, F.7    Mei, B.8    Xu, Z.9    Song, R.10
  • 14
    • 0037047037 scopus 로고    scopus 로고
    • Intraspecific violation of genetic colinearity and its implications in maize
    • Fu H, Dooner HK (2002) Intraspecific violation of genetic colinearity and its implications in maize. Proc Natl Acad Sci USA 99: 9573-9578.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 9573-9578
    • Fu, H.1    Dooner, H.K.2
  • 15
    • 34848926223 scopus 로고    scopus 로고
    • Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome
    • Gao S, Gu YQ, Wu J, Coleman-Derr D, Huo N, Crossman C, Jia J, Zuo Q, Ren Z, Anderson OD et al (2007) Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome. Plant Mol Biol 65: 189-203.
    • (2007) Plant Mol Biol , vol.65 , pp. 189-203
    • Gao, S.1    Gu, Y.Q.2    Wu, J.3    Coleman-Derr, D.4    Huo, N.5    Crossman, C.6    Jia, J.7    Zuo, Q.8    Ren, Z.9    Anderson, O.D.10
  • 16
    • 0036213939 scopus 로고    scopus 로고
    • Evolutionary dynamics of grass genomes
    • Gaut BS (2002) Evolutionary dynamics of grass genomes. New Phytol 154: 15-28.
    • (2002) New Phytol , vol.154 , pp. 15-28
    • Gaut, B.S.1
  • 17
    • 0030959648 scopus 로고    scopus 로고
    • DNA sequence evidence for the segmental allotetraploid origin of maize
    • Gaut BS, Doebley JF (1997) DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci USA 94: 6809-6814.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 6809-6814
    • Gaut, B.S.1    Doebley, J.F.2
  • 19
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P (1998) Consed: a graphical tool for sequence finishing. Genome Res 8: 195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 22
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 23
    • 33645064886 scopus 로고    scopus 로고
    • Expression profile of two storage-protein gene families in hexaploid wheat revealed by large-scale analysis of expressed sequence tags
    • Kawaura K, Mochida K, Ogihara Y (2005) Expression profile of two storage-protein gene families in hexaploid wheat revealed by large-scale analysis of expressed sequence tags. Plant Physiol 139: 1870-1880.
    • (2005) Plant Physiol , vol.139 , pp. 1870-1880
    • Kawaura, K.1    Mochida, K.2    Ogihara, Y.3
  • 24
    • 0035103949 scopus 로고    scopus 로고
    • Evolutionary history of the grasses
    • Kellogg EA (2001) Evolutionary history of the grasses. Plant Physiol 125: 1198-1205.
    • (2001) Plant Physiol , vol.125 , pp. 1198-1205
    • Kellogg, E.A.1
  • 25
    • 0000527387 scopus 로고
    • Structure, expression, and heterogeneity of the rice seed prolamines
    • Kim WT, Okita TW (1988) Structure, expression, and heterogeneity of the rice seed prolamines. Plant Physiol 88: 649-655.
    • (1988) Plant Physiol , vol.88 , pp. 649-655
    • Kim, W.T.1    Okita, T.W.2
  • 26
    • 21144454436 scopus 로고    scopus 로고
    • Gene movement by Helitron transposons contributes to the haplotype variability of maize
    • Lai J, Li Y, Messing J, Dooner HK (2005) Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci USA 102: 9068-9073.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9068-9073
    • Lai, J.1    Li, Y.2    Messing, J.3    Dooner, H.K.4
  • 27
    • 0035865239 scopus 로고    scopus 로고
    • Evolutionary analyses of the human genome
    • Li WH, Gu Z, Wang H, Nekrutenko A (2001) Evolutionary analyses of the human genome. Nature 409: 847-849.
    • (2001) Nature , vol.409 , pp. 847-849
    • Li, W.H.1    Gu, Z.2    Wang, H.3    Nekrutenko, A.4
  • 29
    • 0028978150 scopus 로고
    • Genetic characterization of the Mutator system in maize: behavior and regulation of Mu transposons in a minimal line
    • Lisch D, Chomet P, Freeling M (1995) Genetic characterization of the Mutator system in maize: behavior and regulation of Mu transposons in a minimal line. Genetics 139: 1777-1796.
    • (1995) Genetics , vol.139 , pp. 1777-1796
    • Lisch, D.1    Chomet, P.2    Freeling, M.3
  • 30
    • 4344616881 scopus 로고    scopus 로고
    • Rapid recent growth and divergence of rice nuclear genomes
    • Ma J, Bennetzen JL (2004) Rapid recent growth and divergence of rice nuclear genomes. Proc Natl Acad Sci USA 101: 12404-12410.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 12404-12410
    • Ma, J.1    Bennetzen, J.L.2
  • 32
    • 77958075764 scopus 로고    scopus 로고
    • Construction of a Coix BAC library and isolation of the 22 kDa α-coixin gene cluster
    • Meng X, Huang B, Zhou L, He Y, Chen Q, Yuan Y, Xu Z, Song R (2010) Construction of a Coix BAC library and isolation of the 22 kDa α-coixin gene cluster. Genome 53: 667-674.
    • (2010) Genome , vol.53 , pp. 667-674
    • Meng, X.1    Huang, B.2    Zhou, L.3    He, Y.4    Chen, Q.5    Yuan, Y.6    Xu, Z.7    Song, R.8
  • 34
    • 25144488228 scopus 로고    scopus 로고
    • Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
    • Morgante M, Brunner S, Pea G, Fengler K, Zuccolo A, Rafalski A (2005) Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat Genet 37: 997-1002.
    • (2005) Nat Genet , vol.37 , pp. 997-1002
    • Morgante, M.1    Brunner, S.2    Pea, G.3    Fengler, K.4    Zuccolo, A.5    Rafalski, A.6
  • 36
    • 0034500239 scopus 로고    scopus 로고
    • Polyploid incidence and evolution
    • Otto SP, Whitton J (2000) Polyploid incidence and evolution. Annu Rev Genet 34: 401-437.
    • (2000) Annu Rev Genet , vol.34 , pp. 401-437
    • Otto, S.P.1    Whitton, J.2
  • 37
    • 0027567216 scopus 로고
    • Sequence analysis of 22 kDa-like alpha-coixin genes and their comparison with homologous zein and kafirin genes reveals highly conserved protein structure and regulatory elements
    • Ottoboni LM, Leite A, Yunes JA, Targon ML, de Souza Filho GA, Arruda P (1993) Sequence analysis of 22 kDa-like alpha-coixin genes and their comparison with homologous zein and kafirin genes reveals highly conserved protein structure and regulatory elements. Plant Mol Biol 21: 765-778.
    • (1993) Plant Mol Biol , vol.21 , pp. 765-778
    • Ottoboni, L.M.1    Leite, A.2    Yunes, J.A.3    Targon, M.L.4    de Souza Filho, G.A.5    Arruda, P.6
  • 38
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • Paterson AH, Bowers JE, Chapman BA (2004) Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc Natl Acad Sci USA 101: 9903-9908.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 39
    • 33749357831 scopus 로고    scopus 로고
    • Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice
    • Rizzon C, Ponger L, Gaut BS (2006) Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput Biol 2: e115.
    • (2006) PLoS Comput Biol , vol.2
    • Rizzon, C.1    Ponger, L.2    Gaut, B.S.3
  • 41
    • 0032953158 scopus 로고    scopus 로고
    • Gene duplication and gene conversion in the Caenorhabditis elegans genome
    • Semple C, Wolfe KH (1999) Gene duplication and gene conversion in the Caenorhabditis elegans genome. J Mol Evol 48: 555-564.
    • (1999) J Mol Evol , vol.48 , pp. 555-564
    • Semple, C.1    Wolfe, K.H.2
  • 42
    • 0001030981 scopus 로고
    • The place of grasslands in the earth's cover of vegetation
    • Shantz HL (1954) The place of grasslands in the earth's cover of vegetation. Ecology 35: 143-145.
    • (1954) Ecology , vol.35 , pp. 143-145
    • Shantz, H.L.1
  • 44
    • 0017294484 scopus 로고
    • Evolution of repeated DNA sequences by unequal crossover
    • Smith GP (1976) Evolution of repeated DNA sequences by unequal crossover. Science 191: 528-535.
    • (1976) Science , vol.191 , pp. 528-535
    • Smith, G.P.1
  • 45
    • 0036914308 scopus 로고    scopus 로고
    • Contiguous genomic DNA sequence comprising the 19-kD zein gene family from maize
    • Song R, Messing J (2002) Contiguous genomic DNA sequence comprising the 19-kD zein gene family from maize. Plant Physiol 130: 1626-1635.
    • (2002) Plant Physiol , vol.130 , pp. 1626-1635
    • Song, R.1    Messing, J.2
  • 46
    • 0042307299 scopus 로고    scopus 로고
    • Gene expression of a gene family in maize based on noncollinear haplotypes
    • Song R, Messing J (2003) Gene expression of a gene family in maize based on noncollinear haplotypes. Proc Natl Acad Sci USA 100: 9055-9060.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9055-9060
    • Song, R.1    Messing, J.2
  • 47
    • 0035189066 scopus 로고    scopus 로고
    • Sequence, regulation, and evolution of the maize 22-kD alpha zein gene family
    • Song R, Llaca V, Linton E, Messing J (2001) Sequence, regulation, and evolution of the maize 22-kD alpha zein gene family. Genome Res 11: 1817-1825.
    • (2001) Genome Res , vol.11 , pp. 1817-1825
    • Song, R.1    Llaca, V.2    Linton, E.3    Messing, J.4
  • 48
    • 0036796318 scopus 로고    scopus 로고
    • Mosaic organization of orthologous sequences in grass genomes
    • Song R, Llaca V, Messing J (2002) Mosaic organization of orthologous sequences in grass genomes. Genome Res 12: 1549-1555.
    • (2002) Genome Res , vol.12 , pp. 1549-1555
    • Song, R.1    Llaca, V.2    Messing, J.3
  • 50
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 51
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative
    • The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 52
    • 0024708377 scopus 로고
    • The cloning of the Bar region and the B breakpoint in Drosophila melanogaster: evidence for a transposon-induced rearrangement
    • Tsubota SI, Rosenberg D, Szostak H, Rubin D, Schedl P (1989) The cloning of the Bar region and the B breakpoint in Drosophila melanogaster: evidence for a transposon-induced rearrangement. Genetics 122: 881-890.
    • (1989) Genetics , vol.122 , pp. 881-890
    • Tsubota, S.I.1    Rosenberg, D.2    Szostak, H.3    Rubin, D.4    Schedl, P.5
  • 53
    • 0025334999 scopus 로고
    • A tandem duplication causes the Kn1-O allele of Knotted, a dominant morphological mutant of maize
    • Veit B, Vollbrecht E, Mathern J, Hake S (1990) A tandem duplication causes the Kn1-O allele of Knotted, a dominant morphological mutant of maize. Genetics 125: 623-631.
    • (1990) Genetics , vol.125 , pp. 623-631
    • Veit, B.1    Vollbrecht, E.2    Mathern, J.3    Hake, S.4
  • 54
    • 0034671866 scopus 로고    scopus 로고
    • The origins of genomic duplications in Arabidopsis
    • Vision TJ, Brown DG, Tanksley SD (2000) The origins of genomic duplications in Arabidopsis. Science 290: 2114-2117.
    • (2000) Science , vol.290 , pp. 2114-2117
    • Vision, T.J.1    Brown, D.G.2    Tanksley, S.D.3
  • 55
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel JF (2000) Genome evolution in polyploids. Plant Mol Biol 42: 225-249.
    • (2000) Plant Mol Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 56
    • 55749110429 scopus 로고    scopus 로고
    • Organization of the prolamin gene family provides insight into the evolution of the maize genome and gene duplications in grass species
    • Xu JH, Messing J (2008) Organization of the prolamin gene family provides insight into the evolution of the maize genome and gene duplications in grass species. Proc Natl Acad Sci USA 105: 14330-14335.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 14330-14335
    • Xu, J.H.1    Messing, J.2
  • 57
    • 70949104315 scopus 로고    scopus 로고
    • Amplification of prolamin storage protein genes in different subfamilies of the Poaceae
    • Xu JH, Messing J (2009) Amplification of prolamin storage protein genes in different subfamilies of the Poaceae. Theor Appl Genet 119: 1397-1412.
    • (2009) Theor Appl Genet , vol.119 , pp. 1397-1412
    • Xu, J.H.1    Messing, J.2
  • 58
    • 34547592867 scopus 로고    scopus 로고
    • LTR-FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
    • Xu Z, Wang H (2007) LTR-FINDER: an efficient tool for the prediction of full-length LTR retrotransposons. Nucleic Acids Res 35: W265-W268.
    • (2007) Nucleic Acids Res , vol.35
    • Xu, Z.1    Wang, H.2
  • 59
    • 33747840024 scopus 로고    scopus 로고
    • Unequal sister chromatid and homolog recombination at a tandem duplication of the A1 locus in maize
    • Yandeau-Nelson MD, Xia Y, Li J, Neuffer MG, Schnable PS (2006) Unequal sister chromatid and homolog recombination at a tandem duplication of the A1 locus in maize. Genetics 173: 2211-2226.
    • (2006) Genetics , vol.173 , pp. 2211-2226
    • Yandeau-Nelson, M.D.1    Xia, Y.2    Li, J.3    Neuffer, M.G.4    Schnable, P.S.5
  • 61
    • 0348013059 scopus 로고    scopus 로고
    • Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome?
    • Zhang L, Gaut BS (2003) Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome? Genome Res 13: 2533-2540.
    • (2003) Genome Res , vol.13 , pp. 2533-2540
    • Zhang, L.1    Gaut, B.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.