-
1
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA et al., Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring, Science 286:531-537, 1999.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
-
2
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X et al., Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling, Nature 403:503-511, 2000.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
-
3
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan J, Wei JS, Ringnér M, Saal LH, Ladanyi M, Westermann F, Berthold F, Schwab M, Antonescu C, Peterson C et al., Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks, Nat Med 7:673-679, 2001.
-
(2001)
Nat Med
, vol.7
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringnér, M.3
Saal, L.H.4
Ladanyi, M.5
Westermann, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.9
Peterson, C.10
-
4
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AAM, Mao M, Peterse HL, van der Kooy K, Marton MJ, Witteveen AT et al., Gene expression profiling predicts clinical outcome of breast cancer, Nature 415:530-536, 2002.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
Van't Veer, L.J.1
Dai, H.2
Van De Vijver, M.J.3
He, Y.D.4
Hart, A.A.M.5
Mao, M.6
Peterse, H.L.7
Van Der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
-
5
-
-
3042694117
-
Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
-
Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan AM, Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression, Proc Natl Acad Sci USA 101:9309-9314, 2004.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9309-9314
-
-
Rhodes, D.R.1
Yu, J.2
Shanker, K.3
Deshpande, N.4
Varambally, R.5
Ghosh, D.6
Barrette, T.7
Pandey, A.8
Chinnaiyan, A.M.9
-
6
-
-
20144386127
-
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival
-
Chang HY, Nuyten DSA, Sneddon JB, Hastie T, Tibshirani R, Sorlie T, Dai H, He YD, van't Veer LJ, Bartelink H et al., Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival, Proc Natl Acad Sci USA 102:3738-3743, 2005.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 3738-3743
-
-
Chang, H.Y.1
Nuyten, D.S.A.2
Sneddon, J.B.3
Hastie, T.4
Tibshirani, R.5
Sorlie, T.6
Dai, H.7
He, Y.D.8
Van't Veer, L.J.9
Bartelink, H.10
-
7
-
-
0035213686
-
Identification of toxicologically predictive gene sets using cDNA microarrays
-
Thomas RS, Rank DR, Penn SG, Zastrow GM, Hayes KR, Pande K, Glover E, Silander T, Craven MW, Reddy JK et al., Identification of toxicologically predictive gene sets using cDNA microarrays, Mol Pharmacol 60:1189-1194, 2001.
-
(2001)
Mol Pharmacol
, vol.60
, pp. 1189-1194
-
-
Thomas, R.S.1
Rank, D.R.2
Penn, S.G.3
Zastrow, G.M.4
Hayes, K.R.5
Pande, K.6
Glover, E.7
Silander, T.8
Craven, M.W.9
Reddy, J.K.10
-
8
-
-
0035977845
-
Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity
-
Waring JF, Ciurlionis R, Jolly RA, Heindel M, Ulrich RG, Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity, Toxicol Lett 120:359-368, 2001.
-
(2001)
Toxicol Lett
, vol.120
, pp. 359-368
-
-
Waring, J.F.1
Ciurlionis, R.2
Jolly, R.A.3
Heindel, M.4
Ulrich, R.G.5
-
9
-
-
0041421151
-
Prediction of clinical drug efficacy by classification of drug-induced genomic expression profiles in vitro
-
Gunther EC, Stone DJ, Gerwien RW, Bento P, Heyes MP, Prediction of clinical drug efficacy by classification of drug-induced genomic expression profiles in vitro, Proc Natl Acad Sci USA 100:9608-9613, 2003.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9608-9613
-
-
Gunther, E.C.1
Stone, D.J.2
Gerwien, R.W.3
Bento, P.4
Heyes, M.P.5
-
10
-
-
21144462902
-
Classification of a large microarray data set: Algorithm comparison and analysis of drug signatures
-
Natsoulis G, El Ghaoui L, Lanckriet GRG, Tolley AM, Leroy F, Dunlea S, Eynon BP, Pearson CI, Tugendreich S, Jarnagin K, Classification of a large microarray data set: Algorithm comparison and analysis of drug signatures, Genome Res 15:724-736, 2005.
-
(2005)
Genome Res
, vol.15
, pp. 724-736
-
-
Natsoulis, G.1
El Ghaoui, L.2
Lanckriet, G.R.G.3
Tolley, A.M.4
Leroy, F.5
Dunlea, S.6
Eynon, B.P.7
Pearson, C.I.8
Tugendreich, S.9
Jarnagin, K.10
-
11
-
-
33847408050
-
Gene expression patterns in blood leukocytes discriminate patients with acute infections
-
Ramilo O, Allman W, Chung W, Mejias A, Ardura M, Glaser C, Wittkowski KM, Piqueras B, Banchereau J, Palucka AK et al., Gene expression patterns in blood leukocytes discriminate patients with acute infections, Bl ood 109:2066-2077, 2007.
-
(2007)
Bl Ood
, vol.109
, pp. 2066-2077
-
-
Ramilo, O.1
Allman, W.2
Chung, W.3
Mejias, A.4
Ardura, M.5
Glaser, C.6
Wittkowski, K.M.7
Piqueras, B.8
Banchereau, J.9
Palucka, A.K.10
-
12
-
-
0036139278
-
Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method
-
Li L, Weinberg CR, Darden TA, Pedersen LG, Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method, Bioinformatics 17:1131-1142, 2001.
-
(2001)
Bioinformatics
, vol.17
, pp. 1131-1142
-
-
Li, L.1
Weinberg, C.R.2
Darden, T.A.3
Pedersen, L.G.4
-
13
-
-
30644464444
-
Gene selection and classification of microarray data using random forest
-
Díaz-Uriarte R, Alvarez de Andrés S, Gene selection and classification of microarray data using random forest, BMC Bioinformatics 7:1471-2105, 2006.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 1471-2105
-
-
Díaz-Uriarte, R.1
Alvarez De Andrés, S.2
-
14
-
-
0018655616
-
Determination of optimal dimensionality in statistical pattern classification
-
Raudys ŠJ, Determination of optimal dimensionality in statistical pattern classification, Pattern Recognition 11:263-270, 1979.
-
(1979)
Pattern Recognition
, vol.11
, pp. 263-270
-
-
Raudys, Š.J.1
-
15
-
-
10044276174
-
Determination of the optimal number of features for quadratic discriminant analysis via the normal approximation to the discriminant distribution
-
Hua J, Xiong Z, Dougherty ER, Determination of the optimal number of features for quadratic discriminant analysis via the normal approximation to the discriminant distribution, Pattern Recognition 38:403-421, 2004.
-
(2004)
Pattern Recognition
, vol.38
, pp. 403-421
-
-
Hua, J.1
Xiong, Z.2
Dougherty, E.R.3
-
16
-
-
17544364191
-
Optimal number of features as a function of sample size for various classification rules
-
Hua J, Xiong Z, Lowey J, Suh E, Dougherty ER, Optimal number of features as a function of sample size for various classification rules, Bioinformatics 21:1509-1515, 2005.
-
(2005)
Bioinformatics
, vol.21
, pp. 1509-1515
-
-
Hua, J.1
Xiong, Z.2
Lowey, J.3
Suh, E.4
Dougherty, E.R.5
-
21
-
-
0000764772
-
The use of multiple measurements in taxonomic problems
-
Fisher RA, The use of multiple measurements in taxonomic problems, Annals of Eugenics 7:179-188, 1936.
-
(1936)
Annals of Eugenics
, vol.7
, pp. 179-188
-
-
Fisher, R.A.1
-
26
-
-
70149113077
-
-
R Development Core Team R Foundation for Statistical Computing Vienna, Austria
-
R Development Core Team, R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing Vienna, Austria, 2009.
-
(2009)
R: A Language and Environment for Statistical Computing
-
-
-
27
-
-
84950461478
-
Estimating the error rate of a prediction rule: Improvement on crossvalidation
-
Efron B, Estimating the error rate of a prediction rule: Improvement on crossvalidation, J Am Stat Assoc 78:316-331, 1983.
-
(1983)
J Am Stat Assoc
, vol.78
, pp. 316-331
-
-
Efron, B.1
-
28
-
-
36349035085
-
Quantitative assessment of human whole blood RNA as a potential biomarker for infectious disease
-
Smith CL, Dickinson P, Forster T, Khondoker MR, Craigon M, Ross A, Storm P, Burgess S, Lacaze P, Stenson BJ et al., Quantitative assessment of human whole blood RNA as a potential biomarker for infectious disease, The Analyst 132:1200-1209, 2007.
-
(2007)
The Analyst
, vol.132
, pp. 1200-1209
-
-
Smith, C.L.1
Dickinson, P.2
Forster, T.3
Khondoker, M.R.4
Craigon, M.5
Ross, A.6
Storm, P.7
Burgess, S.8
Lacaze, P.9
Stenson, B.J.10
-
29
-
-
77957741951
-
On the mean accuracy of statistical pattern recognizers
-
Hughes G, On the mean accuracy of statistical pattern recognizers, IEEE Trans Inform Theory 14:55-63, 1968.
-
(1968)
IEEE Trans Inform Theory
, vol.14
, pp. 55-63
-
-
Hughes, G.1
-
30
-
-
33645825183
-
Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
-
Ein-Dor L, Zuk O, Domany E, Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer, Proc Natl Acad Sci 103:5923-5928, 2006.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 5923-5928
-
-
Ein-Dor, L.1
Zuk, O.2
Domany, E.3
-
31
-
-
51749123784
-
Apparently low reproducibility of true differential expression discoveries in microarray studies
-
Zhang M, Yao C, Guo Z, Zou J, Zhang L, Xiao H, Wang D, Yang D, Gong X, Zhu J et al., Apparently low reproducibility of true differential expression discoveries in microarray studies, Bioinformatics 24:2057-2063, 2008.
-
(2008)
Bioinformatics
, vol.24
, pp. 2057-2063
-
-
Zhang, M.1
Yao, C.2
Guo, Z.3
Zou, J.4
Zhang, L.5
Xiao, H.6
Wang, D.7
Yang, D.8
Gong, X.9
Zhu, J.10
-
32
-
-
67649205714
-
Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes
-
Zhang M, Zhang L, Zou J, Yao C, Xiao H, Liu Q, Wang J, Wang D, Wang C, Guo Z, Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes, Bioinformatics 25:1662-1668, 2009.
-
(2009)
Bioinformatics
, vol.25
, pp. 1662-1668
-
-
Zhang, M.1
Zhang, L.2
Zou, J.3
Yao, C.4
Xiao, H.5
Liu, Q.6
Wang, J.7
Wang, D.8
Wang, C.9
Guo, Z.10
-
33
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
3:Article
-
Smyth GK, Linear models and empirical Bayes methods for assessing differential expression in microarray experiments, Statistical Applications in Genetics and Molecular Biology 3:Article 3, 2004.
-
(2004)
Statistical Applications in Genetics and Molecular Biology
, vol.3
-
-
Smyth, G.K.1
|