Diverse rhizobia associated with Sophora alopecuroides grown in different regions of Loess Plateau in China

Systematic and Applied Microbiology

Volumn 33, Issue 8, 2010, Pages 468-477

  Zhao, Longfei ^a   Deng, Zhenshan ^a   Yang, Wenquan ^a   Cao, Ying ^a   Wang, Entao ^b   Wei, Gehong ^a  

^a NORTHWEST A F UNIVERSITY   (China)

^b INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

Author keywords

Ecological region; Genetic diversity; Phylogeny; Rhizobia; Sophora alopecuroides

Indexed keywords

RECA PROTEIN; RNA 16S;

ARTICLE; CHINA; GENE TRANSFER; GENETIC VARIABILITY; GENOTYPE; MESORHIZOBIUM ALHAGI; MESORHIZOBIUM AMORPHAE; MESORHIZOBIUM GOBIENSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLLOBACTERIUM TRIFOLII; PHYLOGENY; PLANT ROOT; PRIORITY JOURNAL; RHIZOBIACEAE; RHIZOBIUM GIARDINII; RHIZOBIUM INDIGOFERAE; RHIZOBIUM RADIOBACTER; SINORHIZOBIUM FREDII; SINORHIZOBIUM MELILOTI; SOPHORA; SOPHORA ALOPECUROIDES; UNINDEXED SEQUENCE;

ACYLTRANSFERASES; BACTERIAL PROTEINS; CHINA; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PLANT ROOTS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; REC A RECOMBINASES; RHIZOBIUM; RHIZOBIUM RADIOBACTER; RNA, RIBOSOMAL, 16S; SOPHORA; SYMBIOSIS;

AGROBACTERIUM TUMEFACIENS; ALHAGI; BACTERIA (MICROORGANISMS); MESORHIZOBIUM; MESORHIZOBIUM AMORPHAE; PHYLLOBACTERIUM TRIFOLII; RHIZOBIUM GIARDINII; SINORHIZOBIUM FREDII; SOPHORA ALOPECUROIDES;

EID: 78649710387     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2010.08.004     Document Type: Article

References (56)

1. Appunu C., N'Zoue A., Laguerre G. Genetic diversity of native Bradyrhizobia isolated from soybeans (Glycine max L.) in different agricultural-ecological-climatic regions of India. Appl. Environ. Microbiol. 2008, 74:5991-5996.
2. Berkum V.P., Beyene D., Eardly B.D. Phylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.). Int. J. Syst. Evol. Microbiol. 1996, 46:240-244.
3. Chen W., Zhu D.Q., Liu H.Z., Sun S.F. Land-air interaction over arid/semi-arid areas in China and its impact on the East Asian summer monsoon. Part I: calibration of the land surface model (BATS) using multicriteria methods. Adv. Atmos. Sci. 2009, 26:1088-1098.
4. Chen W.M., Zhu W.F., Bontemps C., Young J.P., Wei G.H. Mesorhizobium alhagi sp. nov., isolated from root nodules of the wild legume Alhagi sparsifolia. Int. J. Syst. Evol. Microbiol. 2010, 60:958-962.
5. Chen W.X., Wang E.T., Wang S.Y., Li Y.B., Li Y. Characteristics of Rhizobium tianshanense sp. nov., a moderately and slowly growing root nodule bacterium isolated from an arid-saline environment in Xinjiang, P.R. China. Int. J. Syst. Evol. Microbiol. 1995, 45:153-159.
6. Cummings S.P., Gyaneshwar P., Vinuesa P., Farruggia F.T., Andrews M., Humphry D., Elliott G.N., Nelson A., Orr C., Pettitt D., Shah G.R., Santos S.R., Krishnan H.B., Odee D., Moreira F.M.S., Sprent J.I., Young J.P.W., James E.K. Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environ. Microbiol. 2009, 11:2510-2525.
7. Dobert R.C., Breil B.T., Triplett E.W. DNA sequence of the common nodulation genes of Bradyrhizobium elkanii and their phylogenetic relationship to those of other nodulating bacteria. Mol. Plant. Microb. Interact. 1994, 7:564-572.
8. Eisen J.A. The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species. J. Mol. Evol. 1995, 41:1105-1123.
9. Gage D.J. Infection and invasion of roots by symbiotic, nitrogen-fixing rhizobia during nodulation of temperate legumes. Microbiol. Mol. Biol. Rev. 2004, 68:280-300.
10. Gao J.L., Terefework Z.D., Chen W.X., Lindström K. Genetic diversity of rhizobia isolated from Astragalus adsurgens growing in different geographical regions of China. J. Biotechnol. 2001, 91:155-168.
11. Han L.L., Wang E.T., Han T.X., Liu J., Sui X.H., Chen W.F., Chen W.X. Unique community structure and biogeography of soybean rhizobia in the saline-alkaline soils of Xinjiang, China. Plant Soil 2009, 324:291-305.
12. Han S.Z., Wang E.T., Chen W.X. Diverse bacteria isolated from root nodules of Phaseolus vulgaris and species within the genera Campylotropis and Cassia grown in China. Syst. Appl. Microbiol. 2005, 28:265-276.
13. Han T.X., Han L.L., Wu L.J., Chen W.F., Sui X.H., Gu J.G., Wang E.T., Chen W.X. Mesorhizobium gobiense sp. nov. and Mesorhizobium tarimense sp. nov., isolated from wild legumes growing in desert soils of Xinjiang, China. Int. J. Syst. Evol. Microbiol. 2008, 58:2610-2618.
14. Han T.X., Wang E.T., Han L.L., Chen W.F., Sui X.H., Chen W.X. Molecular diversity and phylogeny of rhizobia associated with wild legumes native to Xinjiang, China. Syst. Appl. Microbiol. 2008, 31:287-301.
15. Han T.X., Wang E.T., Wu L.J., Chen W.F., Gu J.G., Gu C.T., Chen W.X. Rhizobium multihospitium sp. nov., isolated from multiple legume species native of Xinjiang, China. Int. J. Syst. Evol. Microbiol. 2008, 58:1693-1699.
16. Haukka K., Lindstrom K., Young J.P.W. Three phylogenetic groups of nodA and nifH genes in Sinorhizobium and Mesorhizobium isolates from leguminous trees growing in Africa and Latin America. Appl. Environ. Microbiol. 1998, 64:419-426.
17. Huang C.Y. Soil Science 2000, China Agriculture Press, Beijing.
18. Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res. 2002, 9:189-197.
19. Laguerre G., Louvrier P., Allard M.R., Amarger N. Compatibility of rhizobial genotypes within natural populations of Rhizobium leguminosarum biovar viciae for nodulation of host legumes. Appl. Environ. Microbiol. 2003, 69:2276-2283.
20. Laguerre G., Nour S.M., Macheret V., Sanjuan J., Drouin P., Amarger N. Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts. Microbiology 2001, 147:981-993.
21. Lambert B., Joos H., Dierickx S., Vantomme R., Swings J., Kersters K., Van Montagu M. Identification and plant interaction of a Phyllobacterium sp., a predominant rhizobacterium of young sugar beet plants. Appl. Environ. Microbiol. 1990, 56:1093-1102.
22. Lei X., Wang E.T., Chen W.F., Sui X.H., Chen W.X. Diverse bacteria isolated from root nodules of wild Vicia species grown in temperate region of China. Arch. Microbiol. 2008, 190:657-671.
23. Li J.H., Wang E.T., Chen W.F., Chen W.X. Genetic diversity and potential for promotion of plant growth detected in nodule endophytic bacteria of soybean grown in Heilongjiang province of China. Soil Biol. Biochem. 2008, 40:238-246.
24. Lourdes L., Ormeño-Orrillo E., Rincón R., Martínez-Romero J., Rogel-Hernández M.A., Martínez-Romero E. Ensifer mexicanus sp. nov. a new species nodulating Acacia angustissima (Mill.) Kuntze in Mexico. Syst. Appl. Microbiol. 2007, 30:280-290.
25. Man C.X., Wang H., Chen W.F., Sui X.H., Wang E.T., Chen W.X. Diverse rhizobia associated with soybean grown in the subtropical and tropical regions of China. Plant Soil 2008, 310:77-87.
26. Mantelin S., Saux M.F.L., Zakhia F., Bena G., Bonneau S., Jeder H., de Lajudie P., Cleyet-Marel J.C. Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and Phyllobacterium brassicacearum sp. nov. Int. J. Syst. Evol. Microbiol. 2006, 56:827-839.
27. McQuiston J.R., Herrera-Leon S., Wertheim B.C., Doyle J., Fields P.I., Tauxe R.V., Logsdon J.M. Molecular phylogeny of the salmonellae: relationships among Salmonella species and subspecies determined from four housekeeping genes and evidence of lateral gene transfer events. J. Biotechnol. 2008, 190:2060-2067.
28. Mhamdi R., Mrabet M., Laguerre G., Tiwari R., Aouani M.E. Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains. Can. J. Microbiol. 2005, 51:105-111.
29. Moulin L., Béna G., Boivin-Masson C., Steogonekpkowski T. Phylogenetic analyses of symbiotic nodulation genes support vertical and lateral gene co-transfer within the Bradyrhizobium genus. Mol. Phylogenet. Evol. 2004, 30:720-732.
30. Mutch L.A., Young J.P.W. Diversity and specificity of Rhizobium leguminosarum biovar viciae on wild and cultivated legumes. Mol. Ecol. 2004, 13:2435-2444.
31. Palmer K.M., Young J.P.W. Higher diversity of Rhizobium leguminosarum biovar viciae populations in arable soils than in grass soils. Appl. Environ. Microbiol. 2000, 66:2445-2450.
32. Ramírez-Bahena M.H., Velázquez E., Fernández-Santos F., Peix A., Martínez-Molina E., Mateos P.F. Phenotypic, genotypic, and symbiotic diversities in strains nodulating clover in different soils in Spain. Can. J. Microbiol. 2009, 55:1207-1216.
33. Rincon-Rosales R., Lloret L., Ponce E., Martinez-Romero E. Rhizobia with different symbiotic efficiencies nodulate Acaciella angustissima in Mexico, including Sinorhizobium chiapanecum sp. nov. which has common symbiotic genes with Sinorhizobium mexicanum. FEMS Microbiol. Ecol. 2009, 67:103-117.
34. Rivas R., Martens M., Lajudie D.P., Willems A. Multilocus sequence analysis of the genus Bradyrhizobium. Syst. Appl. Microbiol. 2009, 32:101-110.
35. Rossi F., Dellaglio F., Torriani S. Evaluation of recA gene as a phylogenetic marker in the classification of dairy propionibacteria. Syst. Appl. Microbiol. 2006, 29:463-469.
36. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
37. Sato M., Tsuchiya H., Miyazaki T., Ohyama M., Tanaka T., Iinuma M. Antibacterial activity of flavanostilbenes against methicillin-resistant Staphylococcus aureus. Lett. Appl. Microbiol. 1995, 21:219-222.
38. Sohail H., Sumera Y., Kauser A.M., Yusuf Z., Fauzia Y.H. Rhizobium, Bradyrhizobium and Agrobacterium strains isolated from cultivated legumes. Biol. Fertil. Soil 2004, 39:179-185.
39. Song J.Z., Xu H.X., Tian S.J., But P.P. Determination of quinolizidine alkaloids in traditional Chinese herbal drugs by nonaqueous capillary electrophoresis. J. Chromatogr. A 1999, 857:303-311.
40. Sullivan J.T., Trzebiatowski J.R., Cruickshank R.W., Gouzy J., Brown S.D., Elliot R.M., Fleetwood D.J., McCallum N.G., Rossbach U., Stuart G.S., Weaver J.E., Webby R.J., De Bruijn F.J., Ronson C.W. Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A. J. Bacteriol. 2002, 184:3086-3095.
41. Sun R., Li B., Zhu G.Y. General Ecology 1993, Higher Education Press, Beijing.
42. Tan Z.Y., Xu X.D., Wang E.T., Gao J.L., Martínez-Romero E., Chen W.X. Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related rhizobia. Int. J. Syst. Bacteriol. 1997, 47:874-879.
43. Thomas P.M., Golly K.F., Virginia R.A., Zyskind J.W. Cloning of nod gene regions from mesquite Rhizobia and Bradyrhizobia and nucleotide sequence of the nodD gene from mesquite rhizobia. Appl. Environ. Microbiol. 1995, 61:3422-3429.
44. Ueda T., Suga Y., Yahiro N., Matsuguchi T. Phylogeny of Sym plasmids of rhizobia by PCR-based sequencing of a nodC segment. J. Biotechnol. 1995, 177:468-472.
45. Valverde A., Velazquez E., Fernandez-Santos F., Vizcaino N., Rivas R., Mateos P.F., Martinez-Molina E., Igual J.M., Willems A. Phyllobacterium trifolii sp. nov., nodulating Trifolium and Lupinus in Spanish soils. Int. J. Syst. Evol. Microbiol. 2005, 55:1985-1989.
46. Van Berkum V.P., Beyene D., Eardly B.D. Phylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.). Int. J. Syst. Bacteriol. 1996, 46:240-244.
47. Van de Peer Y., DeWachter R. Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Comput. Appl. Biosci. 1997, 132:227-230.
48. Ventorino V., Chiurazzi M., Aponte M., Pepe O., Moschetti G. Genetic diversity of a natural population of Rhizobium leguminosarum bv. viciae nodulating plants of Vicia faba in the Vesuvian area. Curr. Microbiol. 2007, 55:512-517.
49. Vincent J.M. The cultivation, isolation and maintenance of rhizobia. A Manual for the Practical Study of the Root-Nodule Bacteria 1970, Blackwell, Oxford.
50. Vinuesa P., Leon-Barrios M., Silva C., Willems A., Jarabo-Lorenzo A., Perez-Galdona R., Werner D., Martinez-Romero E. Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta. Int. J. Syst. Evol. Microbiol. 2005, 55:569-575.
51. Wang E.T., Berkum P., Sui X.H., Beyene D., Chen W.X., Martinez-Romero E. Diversity of rhizobia associated with Amorpha fruticosa isolated from Chinese soils and description of Mesorhizobium amorphae sp. nov. Int. J. Syst. Bacteriol. 1999, 49:51-66.
52. Wang H., Man C.X., Wang E.T., Chen W.X. Diversity of rhizobia and interactions among the host legumes and rhizobial genotypes in an agricultural-forestry ecosystem. Plant Soil 2009, 314:169-182.
53. Wang L.L., Wang E.T., Liu J., Li Y., Chen W.X. Endophytic occupation of root nodules and roots of Melilotus dentatus by Agrobacterium tumefaciens. Microb. Ecol. 2006, 52:436-443.
54. Wei G.H., Chen W.M., Young P.J.W., Bontemps C. A new clade of Mesorhizobium nodulating Alhagi sparsifolia. Syst. Appl. Microbiol. 2009, 32:8-16.
55. Weir B.S., Turner S.J., Silvester W.B., Park D.C., Young J.M. Unexpectedly diverse Mesorhizobium strains and Rhizobium leguminosarum nodulate native legume genera of New Zealand, while introduced legume weeds are nodulated by Bradyrhizobium species. Appl. Environ. Microbiol. 2004, 70:5980-5987.
56. Wernegreen J.J., Riley M.A. Comparison of the evolutionary dynamics of symbiotic and housekeeping loci: a case for the genetic coherence of rhizobial lineages. Mol. Biol. Evol. 1999, 16:98-113.