메뉴 건너뛰기




Volumn 32, Issue 2, 2009, Pages 101-110

Multilocus sequence analysis of the genus Bradyrhizobium

Author keywords

Bradyrhizobium; Housekeeping genes; MLSA; Multilocus sequence analysis; Phylogeny

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING) B; PROTEIN DNAK; RECA PROTEIN; RNA POLYMERASE BETA SUBUNIT;

EID: 59649085740     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2008.12.005     Document Type: Article
Times cited : (179)

References (49)
  • 1
    • 1942443733 scopus 로고    scopus 로고
    • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons
    • Acinas S.G., Marcelino L.A., Klepac-Ceraj V., and Polz M.F. Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J. Bacteriol. 186 (2004) 2629-2635
    • (2004) J. Bacteriol. , vol.186 , pp. 2629-2635
    • Acinas, S.G.1    Marcelino, L.A.2    Klepac-Ceraj, V.3    Polz, M.F.4
  • 4
    • 4344709161 scopus 로고    scopus 로고
    • Comparative phylogenies of the housekeeping genes atpD, infB and rpoB and the 16S rRNA gene within the Pasteurellaceae
    • Christensen H., Kuhnert P., Olsen J.E., and Bisgaard M. Comparative phylogenies of the housekeeping genes atpD, infB and rpoB and the 16S rRNA gene within the Pasteurellaceae. Int. J. Syst. Evol. Microbiol. 54 (2004) 1601-1609
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 1601-1609
    • Christensen, H.1    Kuhnert, P.2    Olsen, J.E.3    Bisgaard, M.4
  • 8
    • 0019491699 scopus 로고
    • DNA:DNA hybridisation studies of Rhizobium japonicum and related Rhizobiaceae
    • Hollis A.B., Kloos W.E., and Elkan G.E. DNA:DNA hybridisation studies of Rhizobium japonicum and related Rhizobiaceae. J. Gen. Microbiol. 123 (1981) 215-222
    • (1981) J. Gen. Microbiol. , vol.123 , pp. 215-222
    • Hollis, A.B.1    Kloos, W.E.2    Elkan, G.E.3
  • 9
    • 45849141919 scopus 로고    scopus 로고
    • Bradyrhizobium iriomotense sp. nov., isolated from a tumor-like root of the legume Entada koshunensis from Iriomote Island in Japan
    • Islam M.S., Kawasaki H., Muramatsu Y., Nakagawa Y., and Seki T. Bradyrhizobium iriomotense sp. nov., isolated from a tumor-like root of the legume Entada koshunensis from Iriomote Island in Japan. Biosci. Biotechnol. Biochem. 72 (2008) 1416-1429
    • (2008) Biosci. Biotechnol. Biochem. , vol.72 , pp. 1416-1429
    • Islam, M.S.1    Kawasaki, H.2    Muramatsu, Y.3    Nakagawa, Y.4    Seki, T.5
  • 11
    • 0020070801 scopus 로고
    • Transfer of Rhizobium japonicum Buchanan 1980 to Bradyrhizobium gen. nov., a genus of slow-growing root nodule bacteria from leguminous plants
    • Jordan D.C. Transfer of Rhizobium japonicum Buchanan 1980 to Bradyrhizobium gen. nov., a genus of slow-growing root nodule bacteria from leguminous plants. Int. J. Syst. Evol. Microbiol. 32 (1982) 136-139
    • (1982) Int. J. Syst. Evol. Microbiol. , vol.32 , pp. 136-139
    • Jordan, D.C.1
  • 13
    • 0026667451 scopus 로고
    • Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov.
    • Kuykendall L.D., Saxena B., Devine T.E., and Udell S.E. Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov. Can. J. Microbiol. 38 (1992) 501-505
    • (1992) Can. J. Microbiol. , vol.38 , pp. 501-505
    • Kuykendall, L.D.1    Saxena, B.2    Devine, T.E.3    Udell, S.E.4
  • 14
    • 85010439719 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acid from micro-organisms
    • Marmur J. A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J. Mol. Biol. 3 (1961) 208-218
    • (1961) J. Mol. Biol. , vol.3 , pp. 208-218
    • Marmur, J.1
  • 15
    • 40449086789 scopus 로고    scopus 로고
    • Advantages of MultiLocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer
    • Martens M., Dawyndt P., Coopman R., Gillis M., De Vos P., and Willems A. Advantages of MultiLocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer. Int. J. Syst. Evol. Microbiol. 58 (2008) 200-214
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 200-214
    • Martens, M.1    Dawyndt, P.2    Coopman, R.3    Gillis, M.4    De Vos, P.5    Willems, A.6
  • 17
    • 0032975893 scopus 로고    scopus 로고
    • Photosynthetic bradyrhizobia from Aeschynomene spp. are specific to stem-nodulated species and form a separate 16S ribosomal DNA restriction fragment length polymorphism group
    • Molouba F., Lorquin J., Willems A., Hoste B., Giraud E., Dreyfus B., Gillis M., de Lajudie P., and Masson-Boivin C. Photosynthetic bradyrhizobia from Aeschynomene spp. are specific to stem-nodulated species and form a separate 16S ribosomal DNA restriction fragment length polymorphism group. Appl. Environ. Microbiol. 65 (1999) 3084-3094
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3084-3094
    • Molouba, F.1    Lorquin, J.2    Willems, A.3    Hoste, B.4    Giraud, E.5    Dreyfus, B.6    Gillis, M.7    de Lajudie, P.8    Masson-Boivin, C.9
  • 20
    • 2642587193 scopus 로고    scopus 로고
    • rRNA and dnaK relationships of Bradyrhizobium sp. nodule bacteria from four Papilionod legume trees in Costa Rica
    • Parker M.A. rRNA and dnaK relationships of Bradyrhizobium sp. nodule bacteria from four Papilionod legume trees in Costa Rica. Syst. Appl. Microbiol. 27 (2004) 334-342
    • (2004) Syst. Appl. Microbiol. , vol.27 , pp. 334-342
    • Parker, M.A.1
  • 21
    • 34247364108 scopus 로고    scopus 로고
    • Diversity and relationships of bradyrhizobia from legumes native to eastern North America
    • Parker M.A., and Kennedy D.A. Diversity and relationships of bradyrhizobia from legumes native to eastern North America. Can. J. Microbiol. 52 (2006) 1148-1157
    • (2006) Can. J. Microbiol. , vol.52 , pp. 1148-1157
    • Parker, M.A.1    Kennedy, D.A.2
  • 22
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 24
    • 43049170366 scopus 로고    scopus 로고
    • Phylogenetic diversity based on rrs, atpD, recA genes and 16S-23S intergenic sequence analyses of rhizobial strains isolated from Vicia faba and Pisum sativum in Peru
    • Santillana N., Ramírez-Bahena M.H., García-Fraile P., Velázquez E., and Zúñiga D. Phylogenetic diversity based on rrs, atpD, recA genes and 16S-23S intergenic sequence analyses of rhizobial strains isolated from Vicia faba and Pisum sativum in Peru. Arch. Microbiol. 189 (2008) 239-247
    • (2008) Arch. Microbiol. , vol.189 , pp. 239-247
    • Santillana, N.1    Ramírez-Bahena, M.H.2    García-Fraile, P.3    Velázquez, E.4    Zúñiga, D.5
  • 26
    • 0344430318 scopus 로고    scopus 로고
    • The variable part of the dnaK gene as an alternative marker for phylogenetic studies of rhizobia and related alpha proteobacteria
    • Stepkowski T., Czaplinska M., Miedzinska K., and Moulin L. The variable part of the dnaK gene as an alternative marker for phylogenetic studies of rhizobia and related alpha proteobacteria. Syst. Appl. Microbiol. 26 (2003) 483-494
    • (2003) Syst. Appl. Microbiol. , vol.26 , pp. 483-494
    • Stepkowski, T.1    Czaplinska, M.2    Miedzinska, K.3    Moulin, L.4
  • 27
    • 32044456213 scopus 로고    scopus 로고
    • European origin of Bradyrhizobium populations infecting lupins and serradella in soils of Western Australia and South Africa
    • Stepkowski T., Moulin L., Krzyzanska A., McInnes A., Law I.J., and Howieson J. European origin of Bradyrhizobium populations infecting lupins and serradella in soils of Western Australia and South Africa. Appl. Environ. Microbiol. 71 (2005) 7041-7052
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7041-7052
    • Stepkowski, T.1    Moulin, L.2    Krzyzanska, A.3    McInnes, A.4    Law, I.J.5    Howieson, J.6
  • 30
    • 0035433191 scopus 로고    scopus 로고
    • Specific detection of Bradyrhizobium and Rhizobium strains colonizing rice (Oryza sativa) roots by 16S-23S ribosomal DNA intergenic spcer-targeted PCR
    • Tan Z., Hurek T., Vinuesa P., Muller P., Ladha J.K., and Reinhold-Hurek B. Specific detection of Bradyrhizobium and Rhizobium strains colonizing rice (Oryza sativa) roots by 16S-23S ribosomal DNA intergenic spcer-targeted PCR. Appl. Environ. Microbiol. 67 (2001) 3655-3664
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3655-3664
    • Tan, Z.1    Hurek, T.2    Vinuesa, P.3    Muller, P.4    Ladha, J.K.5    Reinhold-Hurek, B.6
  • 31
    • 0034525526 scopus 로고    scopus 로고
    • Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence
    • van Berkum P., and Fuhrmann J.J. Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence. Int. J. Syst. Evol. Microbiol. 50 (2002) 2165-2172
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 2165-2172
    • van Berkum, P.1    Fuhrmann, J.J.2
  • 32
    • 33645219103 scopus 로고    scopus 로고
    • Proposal for combining Bradyrhizobium spp. (Aeschynomene indica) with Blastobacter denitrificans and to transfer Blastobacter denitrificans (Hirsh and Muller, 1985) to the genus Bradyrhizobium as Bradyrhizobium denitrificans (comb. nov.)
    • van Berkum P., Leibold J.M., and Eardly B.D. Proposal for combining Bradyrhizobium spp. (Aeschynomene indica) with Blastobacter denitrificans and to transfer Blastobacter denitrificans (Hirsh and Muller, 1985) to the genus Bradyrhizobium as Bradyrhizobium denitrificans (comb. nov.). Syst. Appl. Microbiol. 29 (2006) 207-215
    • (2006) Syst. Appl. Microbiol. , vol.29 , pp. 207-215
    • van Berkum, P.1    Leibold, J.M.2    Eardly, B.D.3
  • 35
    • 16844373395 scopus 로고    scopus 로고
    • Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulotes endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Island, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta
    • Vinuesa P., León-Barrios M., Silva C., Willems A., Jarabe-Lorenzo A., Pérez-Galdona R., Werner D., and Martínez-Romero E. Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulotes endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Island, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta. Int. J. Syst. Evol. Microbiol. 55 (2005) 569-575
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 569-575
    • Vinuesa, P.1    León-Barrios, M.2    Silva, C.3    Willems, A.4    Jarabe-Lorenzo, A.5    Pérez-Galdona, R.6    Werner, D.7    Martínez-Romero, E.8
  • 37
    • 25144442706 scopus 로고    scopus 로고
    • Molecular systematics of rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands
    • Vinuesa P., Silva C., Lorite M.J., Izaguirre-Mayoral M.L., Bedmar E.J., and Martínez-Romero E. Molecular systematics of rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands. Syst. Appl. Microbiol. 28 (2005) 702-716
    • (2005) Syst. Appl. Microbiol. , vol.28 , pp. 702-716
    • Vinuesa, P.1    Silva, C.2    Lorite, M.J.3    Izaguirre-Mayoral, M.L.4    Bedmar, E.J.5    Martínez-Romero, E.6
  • 38
    • 9944222667 scopus 로고    scopus 로고
    • Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation
    • Vinuesa P., Silva C., Werner D., and Martínez-Romero E. Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation. Mol. Phylogenet. Evol. 34 (2005) 29-54
    • (2005) Mol. Phylogenet. Evol. , vol.34 , pp. 29-54
    • Vinuesa, P.1    Silva, C.2    Werner, D.3    Martínez-Romero, E.4
  • 39
    • 34250739505 scopus 로고    scopus 로고
    • Mesorhizobium albiziae sp. nov., a novel bacterium that nodulates Albizia kalkora in a subtropical region of China
    • Wang F.Q., Wang E.T., Liu J., Chen Q., Sui X.H., Chen W.F., and Chen W.X. Mesorhizobium albiziae sp. nov., a novel bacterium that nodulates Albizia kalkora in a subtropical region of China. Int. J. Syst. Evol. Microbiol. 57 (2007) 1192-1199
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 1192-1199
    • Wang, F.Q.1    Wang, E.T.2    Liu, J.3    Chen, Q.4    Sui, X.H.5    Chen, W.F.6    Chen, W.X.7
  • 40
    • 0027120910 scopus 로고
    • Evidence for a close genealogical relationship between Afipia (the causal organism of cat scratch disease), Bradyrhizobium japonicum and Blastobacter denitrificans
    • Willems A., and Collins M.D. Evidence for a close genealogical relationship between Afipia (the causal organism of cat scratch disease), Bradyrhizobium japonicum and Blastobacter denitrificans. FEMS Microbiol. Lett. 96 (1992) 241-246
    • (1992) FEMS Microbiol. Lett. , vol.96 , pp. 241-246
    • Willems, A.1    Collins, M.D.2
  • 41
    • 0035151510 scopus 로고    scopus 로고
    • Phylogenetic and DNA-DNA hybridization analyses of Bradyrhziboium species
    • Willems A., Coopman R., and Gillis M. Phylogenetic and DNA-DNA hybridization analyses of Bradyrhziboium species. Int. J. Syst. Evol. Microbiol. 51 (2001) 111-117
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 111-117
    • Willems, A.1    Coopman, R.2    Gillis, M.3
  • 43
    • 0038343009 scopus 로고    scopus 로고
    • In most Bradyrhizobium groups sequence comparison of 16S-23S rDNA internal transcribed spacer regions corroborates DNA-DNA hybridizations
    • Willems A., Munive A., de Lajudie P., and Gillis M. In most Bradyrhizobium groups sequence comparison of 16S-23S rDNA internal transcribed spacer regions corroborates DNA-DNA hybridizations. Syst. Appl. Microbiol. 26 (2003) 203-210
    • (2003) Syst. Appl. Microbiol. , vol.26 , pp. 203-210
    • Willems, A.1    Munive, A.2    de Lajudie, P.3    Gillis, M.4
  • 44
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: data analysis in molecular biology and evolution
    • Xia X., and Xie Z. DAMBE: data analysis in molecular biology and evolution. J. Hered. 92 (2001) 371-373
    • (2001) J. Hered. , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 46
    • 0028784710 scopus 로고
    • Bradyrhizobium liaoningense sp. nov., isolated from the root nodules of soybeans
    • Xu L.M., Ge C., Cui Z., Li J., and Fan H. Bradyrhizobium liaoningense sp. nov., isolated from the root nodules of soybeans. Int. J. Syst. Bacteriol. 45 (1995) 706-711
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 706-711
    • Xu, L.M.1    Ge, C.2    Cui, Z.3    Li, J.4    Fan, H.5
  • 47
    • 0036865629 scopus 로고    scopus 로고
    • Characterization of rhizobia that nodulate legume species of the genus Lespedeza and description of Bradyrhizobium yuanmingense sp. nov.
    • Yao Z.Y., Kan F.L., Wang E.T., Wei G.H., and Chen W.X. Characterization of rhizobia that nodulate legume species of the genus Lespedeza and description of Bradyrhizobium yuanmingense sp. nov. Int. J. Syst. Evol. Microbiol. 52 (2002) 2219-2230
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 2219-2230
    • Yao, Z.Y.1    Kan, F.L.2    Wang, E.T.3    Wei, G.H.4    Chen, W.X.5
  • 48
    • 34748860266 scopus 로고    scopus 로고
    • Genetic diversity and phylogeny of indigenous rhizobia from cowpea [Vigna unguiculata (L.) Walp.]
    • Zhang W.T., Yang J.K., Yuan T.Y., and Zhou J.C. Genetic diversity and phylogeny of indigenous rhizobia from cowpea [Vigna unguiculata (L.) Walp.]. Biol. Fertil. Soils 44 (2007) 201-210
    • (2007) Biol. Fertil. Soils , vol.44 , pp. 201-210
    • Zhang, W.T.1    Yang, J.K.2    Yuan, T.Y.3    Zhou, J.C.4
  • 49
    • 47349093878 scopus 로고    scopus 로고
    • Bradyrhizobium elkanii, Bradyrhizobium yuanmingense and Bradyrhizobium japonicum are the main rhizobia associated with Vigna unguiculata and Vigna radiata in the subtropical region of China
    • Zhang Y.F., Wang E.T., Tian C.F., Wang F.Q., Han L.L., Chen W.F., and Chen W.X. Bradyrhizobium elkanii, Bradyrhizobium yuanmingense and Bradyrhizobium japonicum are the main rhizobia associated with Vigna unguiculata and Vigna radiata in the subtropical region of China. FEMS Microbiol. Lett. 285 (2008) 146-154
    • (2008) FEMS Microbiol. Lett. , vol.285 , pp. 146-154
    • Zhang, Y.F.1    Wang, E.T.2    Tian, C.F.3    Wang, F.Q.4    Han, L.L.5    Chen, W.F.6    Chen, W.X.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.