Diverse rhizobia associated with soybean grown in the subtropical and tropical regions of China

Plant and Soil

Volumn 310, Issue 1-2, 2008, Pages 77-87

  Man, Chao Xin ^a   Wang, Hao ^a   Chen, Wen Feng ^a   Sui, Xin Hua ^a   Wang, En Tao ^b   Chen, Wen Xin ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

Author keywords

Bradyrhizobia; Correlation; House keeping gene sequence; Soybean; Symbiotic gene phylogeny

Indexed keywords

CLIMATE CONDITIONS; COMMUNITY COMPOSITION; ECOREGION; GENETIC ANALYSIS; RHIZOBACTERIUM; SOYBEAN; SPECIES DIVERSITY; SUBTROPICAL REGION; TROPICAL ENVIRONMENT;

ASIA; CHINA; EURASIA; FAR EAST;

BRADYRHIZOBIACEAE; BRADYRHIZOBIUM; BRADYRHIZOBIUM ELKANII; BRADYRHIZOBIUM JAPONICUM; BRADYRHIZOBIUM LIAONINGENSE; BRADYRHIZOBIUM YUANMINGENSE; GLYCINE MAX; RHIZOBIACEAE; SINORHIZOBIUM FREDII;

EID: 49649087164     PISSN: 0032079X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11104-008-9631-3     Document Type: Article

References (38)

1. RC Abaidoo HH Keyser PW Singleton D Borthakur 2002 Comparison of molecular and antibiotic resistance profile methods for the population analysis of Bradyrhizobium spp. (TGx) isolates that nodulate the new TGx soybean cultivars in Africa J Appl Microbiol 92 109 117
2. S Ando T Yokoyama 1999 Phylogenetic analyses of Bradyrhizobium strains nodulating soybean (Glycine max) in Thailand with reference to the USDA strains of Bradyrhizobium Can J Microbiol 45 639 645
3. FG Barcellos P Menna JS da Silva Batista M Hungria 2007 Evidence of horizontal transfer of symbiotic genes from a Bradyrhizobium japonicum inoculant strain to indigenous diazotrophs Sinorhizobium (Ensifer) fredii and Bradyrhizobium elkanii in a Brazilian Savannah soil Appl Environ Microbiol 73 2635 2643
4. M Camacho C Santamaria F Temprano DN Rodriguez-Navarro A Daza R Espuny R Bellogin FJ Ollero MC de Lyra A Buendia-Claveria J Zhou FD Li C Mateos E Velazquez JM Vinardell JE Ruiz-Sainz 2002 Soils of the Chinese Hubei province show a very high diversity of Sinorhizobium fredii strains Syst Appl Microbiol 25 592 602
5. WX Chen GH Yan JL Li 1988 Numerical taxonomy study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov Int J Syst Bacteriol 38 392 397
6. WX Chen ET Wang SY Wang YB Li XQ Chen Y Li 1995 Characteristics of Rhizobium tianshanense sp. nov. moderately and slowly growing nodule bacterium isolated from an acid saline environment in Xinjiang, People's Republic of China Int J Syst Bacteriol 45 153 159
7. LS Chen A Figueredo FO Pedrosa M Hungria 2000 Genetic characterization of soybean rhizobia in Paraguay Appl Environ Microbiol 66 5099 5103
8. J De Ley H Cattoir A Reynaerts 1970 The quantitative measurement of DNA hybridization from renaturation rates Eur J Biochem 12 133 142
9. Downie JA (1998) Functions of rhizobial nodulation genes. In: Spaink HP, Kondorosi A, Hooykaas PJJ (eds) The rhizobiaceae. Kluwer, Dordrecht, pp 387-402
10. JL Gao Z Terefework WX Chen K Lindström 2001 Genetic diversity of rhizobia isolated from Astragalus adsurgens growing in different geographical regions of China J Biotech 91 155 168
11. SZ Han ET Wang WX Chen 2005 Diverse bacteria isolated from root nodules of Phaseolus vulgaris and species within the genera Campylotropis and Cassia grown in China Syst Appl Microbiol 28 265 276
12. 2-fixing plant- and fungus-associated Azoarcus species by PCR-based genomic fingerprints Appl Environ Microbiol 63 4331 4339
13. Jordan DC (1984) Family III. Rhizobiaceae Conn 1938. In: Krieg NR, Holt JG (eds) Bergey's manual of systematic bacteriology. Williams & Wilkins, Baltimore, pp 234-244
14. S Kumar K Tamura M Nei 2004 MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163
15. G Laguerre SM Nour V Macheret J Sanjuan P Drouin N Amarger 2001 Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts Microbiology 147 981 993
16. TA Lie D Goktan M Engin J Pijnenborg E Anlarsal 1987 Co-evolution of the legume-Rhizobium association Plant Soil 100 171 181
17. XY Liu ET Wang Y Li WX Chen 2007 Diverse bacteria isolated from root nodules of Trifolium, Crotalaria and Mimosa grown in the subtropical regions of China Arch Microbiol 188 1 14
18. CJ Madrzak B Golinska J Kroliczak K Pudelko D Lazewska B Lampka MJ Sadowsky 1995 Diversity among field Populations of Bradyrhizobium japonicum in Poland Appl Environ Microbiol 61 1194 1200
19. M Martens P Dawyndt R Coopman M Gillis P De Vos A Willems 2008 Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium) Int J Syst Evol Microbiol 58 200 214
20. 2-fixation with Phaseolus vulgaris constitute a novel biovar (bv. mediterranense) of Sinorhizobium meliloti Arch Microbiol 187 79 85
21. L Moulin G Béna C Boivin-Masson T Stepkowski 2004 Phylogenetic analyses of symbiotic nodulation genes support vertical and lateral gene co-transfer within the Bradyrhizobium genus Mol Phylogenet Evol 30 720 732
22. E Ormeño-Orrillo P Vinuesa D Zuñiga-Dávila E Martínez-Romero 2006 Molecular diversity of native bradyrhizobia isolated from lima bean (Phaseolus lunatus L.) in Peru Syst Appl Microbiol 29 253 262
23. X Perret C Staehelin WJ Broughton 2000 Molecular basis of symbiotic promiscuity Microbiol Mol Biol Rev 64 180 201
24. R Rasolomampianina X Bailly R Fetiarison R Rabevohitra G Bena L Ramaroson M Raherimandimby L Moulin P De Lajudie B Dreyfus JC Avarre 2005 Nitrogen-fixing nodules from rose wood legume trees (Dalbergia spp.) endemic to Madagascar host seven different genera belonging to alpha- and beta-Proteobacteria Mol Ecol 14 4135 4146
25. MA Santos MA Vargas M Hungria 1999 Characterization of soybean Bradyrhizobium strains adapted to the Brazilian savannas FEMS Microbiol Ecol 30 261 272
26. ZY Tan XD Xu ET Wang JL Gao E Martínez-Romero WX Chen 1997 Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related rhizobia Int J Syst Bacteriol 47 874 879
27. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882
28. CF Tian ET Wang TX Han XH Sui WX Chen 2007 Genetic diversity of rhizobia associated with Vicia faba in three ecological regions of China Arch Microbiol 188 273 282
29. P van Berkum JJ Fuhrmann 2001 Characterization of soybean bradyrhizobia for which serogroup affinities have not been identified Can J Microbiol 47 519 525
30. Vincent JM (1970) A manual for the practical study of root-nodule bacteria. Blackwell Scientific, Oxford, UK
31. P Vinuesa M León-Barrios C Silva A Willems A Jarabo-Lorenzo R Pérez-Galdona D Werner E Martínez-Romero 2005 Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta Int J Syst Evol Microbiol 55 569 575
32. P Vinuesa C Silva MJ Lorite ML Izaguirre-Mayoral EJ Bedmar E Martínez-Romero 2005 Molecular systematics of rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands Syst Appl Microbiol 28 702 216
33. YK Wang JY Gai 2002 Study on the ecological regions of soybean in China (II). Ecological environment and representative varieties Chin J Appl Ecol 13 71 75
34. ET Wang MA Rogel A García-de los Santos J Martínez-Romero MA Cevallos E Martínez-Romero 1999 Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis Int J Syst Bacteriol 49 1479 1491
35. L Wayne DJ Brenner RR Colwell PAD Grimont O Kandler MI Krichevsky LH Moore WEC Moore RGE Murray E Stackebrandt MP Starr HG Trüper 1987 Report of the Ad Hoc Committee on reconciliation of approaches to bacterial systematics Int J Syst Bacteriol 37 463 464
36. A Willems R Coopman M Gillis 2001 Comparison of sequence analysis of 16S-23S rDNA spacer regions, AFLP analysis and DNA-DNA hybridizations in Bradyrhizobium Int J Syst Evol Microbiol 51 623 632
37. LM Xu C Ge Z Cui J Li H Fan 1995 Bradyrhizobium liaoningense sp. nov., isolated from the root nodules of soybean Int J Syst Bacteriol 45 706 711
38. JK Yang WT Zhang TY Yuan JC Zhou 2006 Genotypic characteristics of the rrn operon and genome of indigenous soybean bradyrhizobia in cropping zones of China Can J Microbiol 52 968 976